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PMC:441373 / 32905-33932 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T7780 44-47 DT denotes the
T7781 53-59 NN denotes domain
T7782 48-52 NN denotes TACC
T7783 59-61 , denotes ,
T7784 61-63 PRP denotes we
T7785 64-69 MD denotes would
T7786 78-82 IN denotes that
T7787 167-175 VBN denotes observed
T7788 83-87 DT denotes some
T7789 88-90 IN denotes of
T7790 91-94 DT denotes the
T7791 106-118 NNS denotes interactions
T7792 95-105 JJ denotes functional
T7793 119-123 VBN denotes seen
T7794 124-126 IN denotes in
T7795 127-129 NNP denotes C.
T7796 130-137 NNP denotes elegans
T7797 138-141 CC denotes and
T7798 142-144 NNP denotes D.
T7799 145-157 NNP denotes melanogaster
T7800 158-163 MD denotes would
T7801 164-166 VB denotes be
T7802 176-178 IN denotes in
T7803 179-185 JJR denotes higher
T7804 186-193 NNS denotes animals
T7805 193-194 . denotes .
T7806 194-336 sentence denotes Phylogenetic profiling from these interaction maps suggests two similar sets of predicted interactions for vertebrate TACCs (Fig. 6C and 6D).
T7807 195-207 JJ denotes Phylogenetic
T7808 208-217 NN denotes profiling
T7809 246-254 VBZ denotes suggests
T7810 218-222 IN denotes from
T7811 223-228 DT denotes these
T7812 241-245 NNS denotes maps
T7813 229-240 NN denotes interaction
T7814 255-258 CD denotes two
T7815 267-271 NNS denotes sets
T7816 259-266 JJ denotes similar
T7817 272-274 IN denotes of
T7818 275-284 VBN denotes predicted
T7819 285-297 NNS denotes interactions
T7820 298-301 IN denotes for
T7821 302-312 NN denotes vertebrate
T7822 313-318 NNS denotes TACCs
T7823 319-320 -LRB- denotes (
T7824 325-327 CD denotes 6C
T7825 320-324 NN denotes Fig.
T7826 328-331 CC denotes and
T7827 332-334 CD denotes 6D
T7828 334-335 -RRB- denotes )
T7829 335-336 . denotes .
T7830 336-673 sentence denotes Strikingly, however, the C. elegans specific proteins lin15A, lin36 and lin37 do not have readily discernible homologues in vertebrates or Drosophila, although the presence of a zinc finger domain in lin36 may suggest that this protein is involved directly in transcription or perform an adaptor role similar to LIM containing proteins.
T7831 337-347 RB denotes Strikingly
T7832 422-426 VB denotes have
T7833 347-349 , denotes ,
T7834 349-356 RB denotes however
T7835 356-358 , denotes ,
T7836 358-361 DT denotes the
T7837 382-390 NN denotes proteins
T7838 362-364 NNP denotes C.
T7839 365-372 NNP denotes elegans
T7840 373-381 JJ denotes specific
T7841 391-397 NN denotes lin15A
T7842 397-399 , denotes ,
T7843 399-404 NN denotes lin36
T7844 405-408 CC denotes and
T7845 409-414 NN denotes lin37
T7846 415-417 VBP denotes do
T7847 418-421 RB denotes not
T7848 427-434 RB denotes readily
T7849 435-446 JJ denotes discernible
T7850 447-457 NNS denotes homologues
T7851 458-460 IN denotes in
T7852 461-472 NNS denotes vertebrates
T7853 473-475 CC denotes or
T7854 476-486 NNP denotes Drosophila
T7855 486-488 , denotes ,
T7856 488-496 IN denotes although
T7857 547-554 VB denotes suggest
T7858 497-500 DT denotes the
T7859 501-509 NN denotes presence
T7860 510-512 IN denotes of
T7861 513-514 DT denotes a
T7862 527-533 NN denotes domain
T7863 515-519 NN denotes zinc
T7864 520-526 NN denotes finger
T7865 534-536 IN denotes in
T7866 537-542 NN denotes lin36
T7867 543-546 MD denotes may
T7868 555-559 IN denotes that
T7869 576-584 VBN denotes involved
T7870 560-564 DT denotes this
T7871 565-572 NN denotes protein
T7872 573-575 VBZ denotes is
T7873 585-593 RB denotes directly
T7874 594-596 IN denotes in
T7875 597-610 NN denotes transcription
T7876 611-613 CC denotes or
T7877 614-621 VB denotes perform
T7878 622-624 DT denotes an
T7879 633-637 NN denotes role
T7880 625-632 NN denotes adaptor
T7881 638-645 JJ denotes similar
T7882 646-648 IN denotes to
T7883 649-652 NN denotes LIM
T7884 653-663 VBG denotes containing
T7885 664-672 NN denotes proteins
T7886 672-673 . denotes .
T7887 673-809 sentence denotes For the DTACC interacting proteins, TBPH corresponds to TDP43, a protein implicated in transcriptional regulation and splicing [31,32].
T7888 674-677 IN denotes For
T7889 715-726 VBZ denotes corresponds
T7890 678-681 DT denotes the
T7891 700-708 NN denotes proteins
T7892 682-687 NN denotes DTACC
T7893 688-699 VBG denotes interacting
T7894 708-710 , denotes ,
T7895 710-714 NN denotes TBPH
T7896 727-729 IN denotes to
T7897 730-735 NN denotes TDP43
T7898 735-737 , denotes ,
T7899 737-738 DT denotes a
T7900 739-746 NN denotes protein
T7901 747-757 VBN denotes implicated
T7902 758-760 IN denotes in
T7903 761-776 JJ denotes transcriptional
T7904 777-787 NN denotes regulation
T7905 788-791 CC denotes and
T7906 792-800 NN denotes splicing
T7907 801-802 -LRB- denotes [
T7908 805-807 CD denotes 32
T7909 802-804 CD denotes 31
T7910 804-805 , denotes ,
T7911 807-808 -RRB- denotes ]
T7912 808-809 . denotes .
T7913 809-1027 sentence denotes However, the assignment of the human homologue of CG14540 is less clear, with the closest matches in the human databases corresponding to glutamine rich transcription factors such as CREB and the G-box binding factor.
T7914 810-817 RB denotes However
T7915 868-870 VBZ denotes is
T7916 817-819 , denotes ,
T7917 819-822 DT denotes the
T7918 823-833 NN denotes assignment
T7919 834-836 IN denotes of
T7920 837-840 DT denotes the
T7921 847-856 NN denotes homologue
T7922 841-846 JJ denotes human
T7923 857-859 IN denotes of
T7924 860-867 NN denotes CG14540
T7925 871-875 RBR denotes less
T7926 876-881 JJ denotes clear
T7927 881-883 , denotes ,
T7928 883-887 IN denotes with
T7929 888-891 DT denotes the
T7930 900-907 NNS denotes matches
T7931 892-899 JJS denotes closest
T7932 931-944 VBG denotes corresponding
T7933 908-910 IN denotes in
T7934 911-914 DT denotes the
T7935 921-930 NNS denotes databases
T7936 915-920 JJ denotes human
T7937 945-947 IN denotes to
T7938 948-957 NN denotes glutamine
T7939 958-962 JJ denotes rich
T7940 977-984 NNS denotes factors
T7941 963-976 NN denotes transcription
T7942 985-989 JJ denotes such
T7943 990-992 IN denotes as
T7944 993-997 NN denotes CREB
T7945 998-1001 CC denotes and
T7946 1002-1005 DT denotes the
T7947 1020-1026 NN denotes factor
T7948 1006-1007 NN denotes G
T7949 1008-1011 NN denotes box
T7950 1007-1008 HYPH denotes -
T7951 1012-1019 NN denotes binding
T7952 1026-1027 . denotes .
T7773 0-7 IN denotes Because
T7774 70-77 VB denotes predict
T7775 8-10 IN denotes of
T7776 11-14 DT denotes the
T7777 28-40 NN denotes conservation
T7778 15-27 JJ denotes evolutionary
T7779 41-43 IN denotes of
R5032 T7807 T7808 amod Phylogenetic,profiling
R5033 T7808 T7809 nsubj profiling,suggests
R5034 T7810 T7808 prep from,profiling
R5035 T7811 T7812 det these,maps
R5036 T7812 T7810 pobj maps,from
R5037 T7813 T7812 compound interaction,maps
R5038 T7814 T7815 nummod two,sets
R5039 T7815 T7809 dobj sets,suggests
R5040 T7816 T7815 amod similar,sets
R5041 T7817 T7815 prep of,sets
R5042 T7818 T7819 amod predicted,interactions
R5043 T7819 T7817 pobj interactions,of
R5044 T7820 T7815 prep for,sets
R5045 T7821 T7822 compound vertebrate,TACCs
R5046 T7822 T7820 pobj TACCs,for
R5047 T7823 T7824 punct (,6C
R5048 T7824 T7809 parataxis 6C,suggests
R5049 T7825 T7824 nmod Fig.,6C
R5050 T7826 T7824 cc and,6C
R5051 T7827 T7824 conj 6D,6C
R5052 T7828 T7824 punct ),6C
R5053 T7829 T7809 punct .,suggests
R5054 T7831 T7832 advmod Strikingly,have
R5055 T7833 T7832 punct ", ",have
R5056 T7834 T7832 advmod however,have
R5057 T7835 T7832 punct ", ",have
R5058 T7836 T7837 det the,proteins
R5059 T7837 T7832 nsubj proteins,have
R5060 T7838 T7839 compound C.,elegans
R5061 T7839 T7840 npadvmod elegans,specific
R5062 T7840 T7837 amod specific,proteins
R5063 T7841 T7837 appos lin15A,proteins
R5064 T7842 T7841 punct ", ",lin15A
R5065 T7843 T7841 conj lin36,lin15A
R5066 T7844 T7843 cc and,lin36
R5067 T7845 T7843 conj lin37,lin36
R5068 T7846 T7832 aux do,have
R5069 T7847 T7832 neg not,have
R5070 T7848 T7849 advmod readily,discernible
R5071 T7849 T7850 amod discernible,homologues
R5072 T7850 T7832 dobj homologues,have
R5073 T7851 T7832 prep in,have
R5074 T7852 T7851 pobj vertebrates,in
R5075 T7853 T7852 cc or,vertebrates
R5076 T7854 T7852 conj Drosophila,vertebrates
R5077 T7855 T7832 punct ", ",have
R5078 T7856 T7857 mark although,suggest
R5079 T7857 T7832 advcl suggest,have
R5080 T7858 T7859 det the,presence
R5081 T7859 T7857 nsubj presence,suggest
R5082 T7860 T7859 prep of,presence
R5083 T7861 T7862 det a,domain
R5084 T7862 T7860 pobj domain,of
R5085 T7863 T7864 compound zinc,finger
R5086 T7864 T7862 compound finger,domain
R5087 T7865 T7859 prep in,presence
R5088 T7866 T7865 pobj lin36,in
R5089 T7867 T7857 aux may,suggest
R5090 T7868 T7869 mark that,involved
R5091 T7869 T7857 ccomp involved,suggest
R5092 T7870 T7871 det this,protein
R5093 T7871 T7869 nsubjpass protein,involved
R5094 T7872 T7869 auxpass is,involved
R5095 T7873 T7869 advmod directly,involved
R5096 T7874 T7869 prep in,involved
R5097 T7875 T7874 pobj transcription,in
R5098 T7876 T7869 cc or,involved
R5099 T7877 T7869 conj perform,involved
R5100 T7878 T7879 det an,role
R5101 T7879 T7877 dobj role,perform
R5102 T7880 T7879 compound adaptor,role
R5103 T7881 T7879 amod similar,role
R5104 T7882 T7881 prep to,similar
R5105 T7883 T7884 npadvmod LIM,containing
R5106 T7884 T7885 amod containing,proteins
R5107 T7885 T7882 pobj proteins,to
R5108 T7886 T7832 punct .,have
R5109 T7888 T7889 prep For,corresponds
R5110 T7890 T7891 det the,proteins
R5111 T7891 T7888 pobj proteins,For
R5112 T7892 T7893 npadvmod DTACC,interacting
R5113 T7893 T7891 amod interacting,proteins
R5114 T7894 T7889 punct ", ",corresponds
R5115 T7895 T7889 nsubj TBPH,corresponds
R5116 T7896 T7889 prep to,corresponds
R5117 T7897 T7896 pobj TDP43,to
R5118 T7898 T7897 punct ", ",TDP43
R5119 T7899 T7900 det a,protein
R5120 T7900 T7897 appos protein,TDP43
R5121 T7901 T7900 acl implicated,protein
R5122 T7902 T7901 prep in,implicated
R5123 T7903 T7904 amod transcriptional,regulation
R5124 T7904 T7902 pobj regulation,in
R5125 T7905 T7904 cc and,regulation
R5126 T7906 T7904 conj splicing,regulation
R5127 T7907 T7908 punct [,32
R5128 T7908 T7889 parataxis 32,corresponds
R5129 T7909 T7908 nummod 31,32
R5130 T7910 T7908 punct ",",32
R5131 T7911 T7908 punct ],32
R5132 T7912 T7889 punct .,corresponds
R5133 T7914 T7915 advmod However,is
R5134 T7916 T7915 punct ", ",is
R5135 T7917 T7918 det the,assignment
R5136 T7918 T7915 nsubj assignment,is
R5137 T7919 T7918 prep of,assignment
R5138 T7920 T7921 det the,homologue
R5139 T7921 T7919 pobj homologue,of
R5140 T7922 T7921 amod human,homologue
R5141 T7923 T7921 prep of,homologue
R5142 T7924 T7923 pobj CG14540,of
R5143 T7925 T7926 advmod less,clear
R5144 T7926 T7915 acomp clear,is
R5145 T7927 T7915 punct ", ",is
R5146 T7928 T7915 prep with,is
R5147 T7929 T7930 det the,matches
R5148 T7930 T7932 nsubj matches,corresponding
R5149 T7931 T7930 amod closest,matches
R5150 T7932 T7928 pcomp corresponding,with
R5151 T7933 T7930 prep in,matches
R5152 T7934 T7935 det the,databases
R5153 T7935 T7933 pobj databases,in
R5154 T7936 T7935 amod human,databases
R5155 T7937 T7932 prep to,corresponding
R5156 T7938 T7939 npadvmod glutamine,rich
R5157 T7939 T7940 amod rich,factors
R5158 T7940 T7937 pobj factors,to
R5159 T7941 T7940 compound transcription,factors
R5160 T7942 T7943 amod such,as
R5161 T7943 T7940 prep as,factors
R5162 T7944 T7943 pobj CREB,as
R5163 T7945 T7944 cc and,CREB
R5164 T7946 T7947 det the,factor
R5165 T7947 T7944 conj factor,CREB
R5166 T7948 T7949 compound G,box
R5167 T7949 T7947 compound box,factor
R5168 T7950 T7949 punct -,box
R5169 T7951 T7947 compound binding,factor
R5170 T7952 T7915 punct .,is
R5000 T7773 T7774 prep Because,predict
R5001 T7775 T7773 pcomp of,Because
R5002 T7776 T7777 det the,conservation
R5003 T7777 T7773 pobj conservation,Because
R5004 T7778 T7777 amod evolutionary,conservation
R5005 T7779 T7777 prep of,conservation
R5006 T7780 T7781 det the,domain
R5007 T7781 T7779 pobj domain,of
R5008 T7782 T7781 compound TACC,domain
R5009 T7783 T7774 punct ", ",predict
R5010 T7784 T7774 nsubj we,predict
R5011 T7785 T7774 aux would,predict
R5012 T7786 T7787 mark that,observed
R5013 T7787 T7774 ccomp observed,predict
R5014 T7788 T7787 nsubjpass some,observed
R5015 T7789 T7788 prep of,some
R5016 T7790 T7791 det the,interactions
R5017 T7791 T7789 pobj interactions,of
R5018 T7792 T7791 amod functional,interactions
R5019 T7793 T7791 acl seen,interactions
R5020 T7794 T7793 prep in,seen
R5021 T7795 T7796 compound C.,elegans
R5022 T7796 T7794 pobj elegans,in
R5023 T7797 T7796 cc and,elegans
R5024 T7798 T7799 compound D.,melanogaster
R5025 T7799 T7796 conj melanogaster,elegans
R5026 T7800 T7787 aux would,observed
R5027 T7801 T7787 auxpass be,observed
R5028 T7802 T7787 prep in,observed
R5029 T7803 T7804 amod higher,animals
R5030 T7804 T7802 pobj animals,in
R5031 T7805 T7774 punct .,predict

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7130 15-40 SO_EXT:biological_conservation_process_or_quality denotes evolutionary conservation
T7131 53-59 SO_EXT:0000417 denotes domain
T7132 127-137 NCBITaxon:6239 denotes C. elegans
T7133 142-157 NCBITaxon:7227 denotes D. melanogaster
T7134 186-193 NCBITaxon:33208 denotes animals
T7135 302-312 NCBITaxon:7742 denotes vertebrate
T7136 362-372 NCBITaxon:6239 denotes C. elegans
T7137 382-390 CHEBI_PR_EXT:protein denotes proteins
T7138 391-397 PR_EXT:Q27365 denotes lin15A
T7139 399-404 PR_EXT:P34427 denotes lin36
T7140 409-414 PR_EXT:000009822 denotes lin37
T7141 447-457 SO_EXT:0000853 denotes homologues
T7142 461-472 NCBITaxon:7742 denotes vertebrates
T7143 476-486 NCBITaxon:7215 denotes Drosophila
T7144 515-519 CHEBI_EXT:zinc denotes zinc
T7145 527-533 SO_EXT:0000417 denotes domain
T7146 537-542 PR_EXT:P34427 denotes lin36
T7147 565-572 CHEBI_PR_EXT:protein denotes protein
T7148 597-610 GO_EXT:transcription denotes transcription
T7149 625-632 GO_EXT:0060090 denotes adaptor
T7150 664-672 CHEBI_PR_EXT:protein denotes proteins
T7151 700-708 CHEBI_PR_EXT:protein denotes proteins
T7152 730-735 PR_EXT:000016057 denotes TDP43
T7153 739-746 CHEBI_PR_EXT:protein denotes protein
T7154 761-776 GO_EXT:transcription denotes transcriptional
T7155 777-787 GO:0065007 denotes regulation
T7156 792-800 GO:0008380 denotes splicing
T7157 841-846 NCBITaxon:9606 denotes human
T7158 847-856 SO_EXT:0000853 denotes homologue
T7159 915-920 NCBITaxon:9606 denotes human
T7160 948-957 CHEBI_SO_EXT:glutamine denotes glutamine
T7161 963-976 GO_EXT:transcription denotes transcription
T7162 963-984 GO_EXT:transcription_factor denotes transcription factors
T7163 993-997 PR_EXT:CREB denotes CREB
T7164 1006-1007 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T7165 1006-1011 SO_EXT:0001980 denotes G-box
T7166 1012-1019 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6993 53-59 SO:0000417 denotes domain
T6994 127-137 NCBITaxon:6239 denotes C. elegans
T6995 142-157 NCBITaxon:7227 denotes D. melanogaster
T6996 186-193 NCBITaxon:33208 denotes animals
T6997 302-312 NCBITaxon:7742 denotes vertebrate
T6998 362-372 NCBITaxon:6239 denotes C. elegans
T6999 391-397 PR:Q27365 denotes lin15A
T7000 399-404 PR:P34427 denotes lin36
T7001 409-414 PR:000009822 denotes lin37
T7002 447-457 SO:0000853 denotes homologues
T7003 461-472 NCBITaxon:7742 denotes vertebrates
T7004 476-486 NCBITaxon:7215 denotes Drosophila
T7005 527-533 SO:0000417 denotes domain
T7006 537-542 PR:P34427 denotes lin36
T7007 730-735 PR:000016057 denotes TDP43
T7008 777-787 GO:0065007 denotes regulation
T7009 792-800 GO:0008380 denotes splicing
T7010 841-846 NCBITaxon:9606 denotes human
T7011 847-856 SO:0000853 denotes homologue
T7012 915-920 NCBITaxon:9606 denotes human
T7013 1006-1011 SO:0001980 denotes G-box

2_test

Id Subject Object Predicate Lexical cue
15207008-7745706-9666040 802-804 7745706 denotes 31
15207008-14667816-9666041 805-807 14667816 denotes 32