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PMC:441373 / 20784-21485 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T12814 0-9 NN denotes Formation
T12815 10-12 IN denotes of
T12816 13-26 NNS denotes protoclusters
T12817 27-29 IN denotes in
T12818 30-38 NNP denotes Takifugu
T12819 39-47 NNP denotes rubripes
T12820 48-51 CC denotes and
T12821 52-57 NNP denotes Ciona
T12822 58-70 NNP denotes intestinalis
T12823 70-72 : denotes :
T12824 72-73 -LRB- denotes (
T12825 73-74 LS denotes A
T12826 72-173 sentence denotes (A): Structure of the genomic scaffolds containing the Takifugu rubripes trTACC1A and trTACC1B genes.
T12827 77-86 NN denotes Structure
T12828 74-75 -RRB- denotes )
T12829 75-77 : denotes :
T12830 87-89 IN denotes of
T12831 90-93 DT denotes the
T12832 102-111 NNS denotes scaffolds
T12833 94-101 JJ denotes genomic
T12834 112-122 VBG denotes containing
T12835 123-126 DT denotes the
T12836 167-172 NNS denotes genes
T12837 127-135 NNP denotes Takifugu
T12838 136-144 NNS denotes rubripes
T12839 145-153 NN denotes trTACC1A
T12840 154-157 CC denotes and
T12841 158-166 NN denotes trTACC1B
T12842 172-173 . denotes .
T12843 173-332 sentence denotes Scaffold 12, the site for the trTACC1A gene contains genes found with either homologues or orthologues on the distal long arm of human chromosome 10 and 4p16.
T12844 174-182 NN denotes Scaffold
T12845 218-226 VBZ denotes contains
T12846 183-185 CD denotes 12
T12847 185-187 , denotes ,
T12848 187-190 DT denotes the
T12849 191-195 NN denotes site
T12850 196-199 IN denotes for
T12851 200-203 DT denotes the
T12852 213-217 NN denotes gene
T12853 204-212 NN denotes trTACC1A
T12854 227-232 NNS denotes genes
T12855 233-238 VBN denotes found
T12856 239-243 IN denotes with
T12857 244-250 CC denotes either
T12858 251-261 NNS denotes homologues
T12859 262-264 CC denotes or
T12860 265-276 NNS denotes orthologues
T12861 277-279 IN denotes on
T12862 280-283 DT denotes the
T12863 296-299 NN denotes arm
T12864 284-290 JJ denotes distal
T12865 291-295 JJ denotes long
T12866 300-302 IN denotes of
T12867 303-308 JJ denotes human
T12868 327-331 NN denotes 4p16
T12869 309-319 NN denotes chromosome
T12870 320-322 CD denotes 10
T12871 323-326 CC denotes and
T12872 331-332 . denotes .
T12873 332-466 sentence denotes This scaffold, therefore, has some of the characteristics of the predicted immediate ancestor of the TACC1/TACC2 chromosomal segment.
T12874 333-337 DT denotes This
T12875 338-346 NN denotes scaffold
T12876 359-362 VBZ denotes has
T12877 346-348 , denotes ,
T12878 348-357 RB denotes therefore
T12879 357-359 , denotes ,
T12880 363-367 DT denotes some
T12881 368-370 IN denotes of
T12882 371-374 DT denotes the
T12883 375-390 NNS denotes characteristics
T12884 391-393 IN denotes of
T12885 394-397 DT denotes the
T12886 418-426 NN denotes ancestor
T12887 398-407 VBN denotes predicted
T12888 408-417 JJ denotes immediate
T12889 427-429 IN denotes of
T12890 430-433 DT denotes the
T12891 458-465 NN denotes segment
T12892 434-439 NN denotes TACC1
T12893 440-445 NN denotes TACC2
T12894 439-440 HYPH denotes /
T12895 446-457 JJ denotes chromosomal
T12896 465-466 . denotes .
T12897 466-592 sentence denotes trTACC1B is found on scaffold 191, which contains orthologues of genes found in the proximal short arm of human chromosome 8.
T12898 467-475 NN denotes trTACC1B
T12899 479-484 VBN denotes found
T12900 476-478 VBZ denotes is
T12901 485-487 IN denotes on
T12902 488-496 NN denotes scaffold
T12903 497-500 CD denotes 191
T12904 500-502 , denotes ,
T12905 502-507 WDT denotes which
T12906 508-516 VBZ denotes contains
T12907 517-528 NNS denotes orthologues
T12908 529-531 IN denotes of
T12909 532-537 NNS denotes genes
T12910 538-543 VBN denotes found
T12911 544-546 IN denotes in
T12912 547-550 DT denotes the
T12913 566-569 NN denotes arm
T12914 551-559 JJ denotes proximal
T12915 560-565 JJ denotes short
T12916 570-572 IN denotes of
T12917 573-578 JJ denotes human
T12918 579-589 NN denotes chromosome
T12919 590-591 CD denotes 8
T12920 591-592 . denotes .
T12921 592-701 sentence denotes (B): Ciona intestinalis clusters containing genes found in paralogous segments on human 8, 4p16, 10q and 5q.
T12922 593-594 -LRB- denotes (
T12923 594-595 LS denotes B
T12924 617-625 NNS denotes clusters
T12925 595-596 -RRB- denotes )
T12926 596-598 : denotes :
T12927 598-603 NNP denotes Ciona
T12928 604-616 NNP denotes intestinalis
T12929 626-636 VBG denotes containing
T12930 637-642 NNS denotes genes
T12931 643-648 VBN denotes found
T12932 649-651 IN denotes in
T12933 652-662 JJ denotes paralogous
T12934 663-671 NNS denotes segments
T12935 672-674 IN denotes on
T12936 675-680 JJ denotes human
T12937 684-688 NN denotes 4p16
T12938 681-682 CD denotes 8
T12939 682-684 , denotes ,
T12940 688-690 , denotes ,
T12941 690-693 NN denotes 10q
T12942 694-697 CC denotes and
T12943 698-700 NN denotes 5q
T12944 700-701 . denotes .
R8282 T12815 T12814 prep of,Formation
R8283 T12816 T12815 pobj protoclusters,of
R8284 T12817 T12814 prep in,Formation
R8285 T12818 T12819 compound Takifugu,rubripes
R8286 T12819 T12817 pobj rubripes,in
R8287 T12820 T12819 cc and,rubripes
R8288 T12821 T12822 compound Ciona,intestinalis
R8289 T12822 T12819 conj intestinalis,rubripes
R8290 T12823 T12814 punct : ,Formation
R8291 T12824 T12825 punct (,A
R8292 T12825 T12827 meta A,Structure
R8293 T12828 T12825 punct ),A
R8294 T12829 T12827 punct : ,Structure
R8295 T12830 T12827 prep of,Structure
R8296 T12831 T12832 det the,scaffolds
R8297 T12832 T12830 pobj scaffolds,of
R8298 T12833 T12832 amod genomic,scaffolds
R8299 T12834 T12832 acl containing,scaffolds
R8300 T12835 T12836 det the,genes
R8301 T12836 T12834 dobj genes,containing
R8302 T12837 T12838 nmod Takifugu,rubripes
R8303 T12838 T12836 nmod rubripes,genes
R8304 T12839 T12836 nmod trTACC1A,genes
R8305 T12840 T12839 cc and,trTACC1A
R8306 T12841 T12839 conj trTACC1B,trTACC1A
R8307 T12842 T12827 punct .,Structure
R8308 T12844 T12845 nsubj Scaffold,contains
R8309 T12846 T12844 nummod 12,Scaffold
R8310 T12847 T12844 punct ", ",Scaffold
R8311 T12848 T12849 det the,site
R8312 T12849 T12844 appos site,Scaffold
R8313 T12850 T12849 prep for,site
R8314 T12851 T12852 det the,gene
R8315 T12852 T12850 pobj gene,for
R8316 T12853 T12852 compound trTACC1A,gene
R8317 T12854 T12845 dobj genes,contains
R8318 T12855 T12854 acl found,genes
R8319 T12856 T12855 prep with,found
R8320 T12857 T12858 preconj either,homologues
R8321 T12858 T12856 pobj homologues,with
R8322 T12859 T12858 cc or,homologues
R8323 T12860 T12858 conj orthologues,homologues
R8324 T12861 T12855 prep on,found
R8325 T12862 T12863 det the,arm
R8326 T12863 T12861 pobj arm,on
R8327 T12864 T12863 amod distal,arm
R8328 T12865 T12863 amod long,arm
R8329 T12866 T12863 prep of,arm
R8330 T12867 T12868 amod human,4p16
R8331 T12868 T12866 pobj 4p16,of
R8332 T12869 T12868 nmod chromosome,4p16
R8333 T12870 T12868 nummod 10,4p16
R8334 T12871 T12868 cc and,4p16
R8335 T12872 T12845 punct .,contains
R8336 T12874 T12875 det This,scaffold
R8337 T12875 T12876 nsubj scaffold,has
R8338 T12877 T12876 punct ", ",has
R8339 T12878 T12876 advmod therefore,has
R8340 T12879 T12876 punct ", ",has
R8341 T12880 T12876 dobj some,has
R8342 T12881 T12880 prep of,some
R8343 T12882 T12883 det the,characteristics
R8344 T12883 T12881 pobj characteristics,of
R8345 T12884 T12883 prep of,characteristics
R8346 T12885 T12886 det the,ancestor
R8347 T12886 T12884 pobj ancestor,of
R8348 T12887 T12886 amod predicted,ancestor
R8349 T12888 T12886 amod immediate,ancestor
R8350 T12889 T12886 prep of,ancestor
R8351 T12890 T12891 det the,segment
R8352 T12891 T12889 pobj segment,of
R8353 T12892 T12893 nmod TACC1,TACC2
R8354 T12893 T12891 nmod TACC2,segment
R8355 T12894 T12893 punct /,TACC2
R8356 T12895 T12891 amod chromosomal,segment
R8357 T12896 T12876 punct .,has
R8358 T12898 T12899 nsubjpass trTACC1B,found
R8359 T12900 T12899 auxpass is,found
R8360 T12901 T12899 prep on,found
R8361 T12902 T12901 pobj scaffold,on
R8362 T12903 T12902 nummod 191,scaffold
R8363 T12904 T12902 punct ", ",scaffold
R8364 T12905 T12906 dep which,contains
R8365 T12906 T12902 relcl contains,scaffold
R8366 T12907 T12906 dobj orthologues,contains
R8367 T12908 T12907 prep of,orthologues
R8368 T12909 T12908 pobj genes,of
R8369 T12910 T12909 acl found,genes
R8370 T12911 T12910 prep in,found
R8371 T12912 T12913 det the,arm
R8372 T12913 T12911 pobj arm,in
R8373 T12914 T12913 amod proximal,arm
R8374 T12915 T12913 amod short,arm
R8375 T12916 T12913 prep of,arm
R8376 T12917 T12918 amod human,chromosome
R8377 T12918 T12916 pobj chromosome,of
R8378 T12919 T12918 nummod 8,chromosome
R8379 T12920 T12899 punct .,found
R8380 T12922 T12923 punct (,B
R8381 T12923 T12924 meta B,clusters
R8382 T12925 T12923 punct ),B
R8383 T12926 T12924 punct : ,clusters
R8384 T12927 T12928 compound Ciona,intestinalis
R8385 T12928 T12924 compound intestinalis,clusters
R8386 T12929 T12924 acl containing,clusters
R8387 T12930 T12929 dobj genes,containing
R8388 T12931 T12930 acl found,genes
R8389 T12932 T12931 prep in,found
R8390 T12933 T12934 amod paralogous,segments
R8391 T12934 T12932 pobj segments,in
R8392 T12935 T12931 prep on,found
R8393 T12936 T12937 amod human,4p16
R8394 T12937 T12935 pobj 4p16,on
R8395 T12938 T12937 nummod 8,4p16
R8396 T12939 T12937 punct ", ",4p16
R8397 T12940 T12937 punct ", ",4p16
R8398 T12941 T12937 conj 10q,4p16
R8399 T12942 T12941 cc and,10q
R8400 T12943 T12941 conj 5q,10q
R8401 T12944 T12924 punct .,clusters

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12784 30-47 NCBITaxon:31033 denotes Takifugu rubripes
T12785 52-70 NCBITaxon:7719 denotes Ciona intestinalis
T12786 94-101 SO_EXT:0001026 denotes genomic
T12787 102-111 SO_EXT:0001248 denotes scaffolds
T12788 127-144 NCBITaxon:31033 denotes Takifugu rubripes
T12789 167-172 SO_EXT:0000704 denotes genes
T12790 174-182 SO_EXT:0001248 denotes Scaffold
T12791 213-217 SO_EXT:0000704 denotes gene
T12792 227-232 SO_EXT:0000704 denotes genes
T12793 251-261 SO_EXT:0000853 denotes homologues
T12794 265-276 SO_EXT:0000855 denotes orthologues
T12795 296-302 _FRAGMENT denotes arm of
T12796 309-319 SO_EXT:0000105 denotes chromosome
T12797 303-308 NCBITaxon:9606 denotes human
T12798 309-319 GO_SO_EXT:chromosome denotes chromosome
T12799 338-346 SO_EXT:0001248 denotes scaffold
T12800 434-439 PR_EXT:000016006 denotes TACC1
T12801 440-445 PR_EXT:000016007 denotes TACC2
T12802 446-465 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal segment
T12803 488-496 SO_EXT:0001248 denotes scaffold
T12804 517-528 SO_EXT:0000855 denotes orthologues
T12805 532-537 SO_EXT:0000704 denotes genes
T12806 566-572 _FRAGMENT denotes arm of
T12807 579-589 SO_EXT:0000105 denotes chromosome
T12808 573-578 NCBITaxon:9606 denotes human
T12809 579-589 GO_SO_EXT:chromosome denotes chromosome
T12810 598-616 NCBITaxon:7719 denotes Ciona intestinalis
T12811 637-642 SO_EXT:0000704 denotes genes
T12812 652-671 SO_EXT:0000854 denotes paralogous segments
T12813 675-680 NCBITaxon:9606 denotes human
R8280 T12796 T12795 _lexicallyChainedTo chromosome,arm of
R8281 T12807 T12806 _lexicallyChainedTo chromosome,arm of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12757 30-47 NCBITaxon:31033 denotes Takifugu rubripes
T12758 52-70 NCBITaxon:7719 denotes Ciona intestinalis
T12759 94-101 SO:0001026 denotes genomic
T12760 102-111 SO:0001248 denotes scaffolds
T12761 127-144 NCBITaxon:31033 denotes Takifugu rubripes
T12762 167-172 SO:0000704 denotes genes
T12763 174-182 SO:0001248 denotes Scaffold
T12764 213-217 SO:0000704 denotes gene
T12765 227-232 SO:0000704 denotes genes
T12766 251-261 SO:0000853 denotes homologues
T12767 265-276 SO:0000855 denotes orthologues
T12768 296-302 _FRAGMENT denotes arm of
T12769 309-319 SO:0000105 denotes chromosome
T12770 303-308 NCBITaxon:9606 denotes human
T12771 338-346 SO:0001248 denotes scaffold
T12772 434-439 PR:000016006 denotes TACC1
T12773 440-445 PR:000016007 denotes TACC2
T12774 488-496 SO:0001248 denotes scaffold
T12775 517-528 SO:0000855 denotes orthologues
T12776 532-537 SO:0000704 denotes genes
T12777 566-572 _FRAGMENT denotes arm of
T12778 579-589 SO:0000105 denotes chromosome
T12779 573-578 NCBITaxon:9606 denotes human
T12780 598-616 NCBITaxon:7719 denotes Ciona intestinalis
T12781 637-642 SO:0000704 denotes genes
T12782 652-671 SO:0000854 denotes paralogous segments
T12783 675-680 NCBITaxon:9606 denotes human
R8278 T12769 T12768 _lexicallyChainedTo chromosome,arm of
R8279 T12778 T12777 _lexicallyChainedTo chromosome,arm of