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PMC:441373 / 20774-21485 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T12814 10-19 NN denotes Formation
T12815 20-22 IN denotes of
T12816 23-36 NNS denotes protoclusters
T12817 37-39 IN denotes in
T12818 40-48 NNP denotes Takifugu
T12819 49-57 NNP denotes rubripes
T12820 58-61 CC denotes and
T12821 62-67 NNP denotes Ciona
T12822 68-80 NNP denotes intestinalis
T12823 80-82 : denotes :
T12824 82-83 -LRB- denotes (
T12825 83-84 LS denotes A
T12826 82-183 sentence denotes (A): Structure of the genomic scaffolds containing the Takifugu rubripes trTACC1A and trTACC1B genes.
T12827 87-96 NN denotes Structure
T12828 84-85 -RRB- denotes )
T12829 85-87 : denotes :
T12830 97-99 IN denotes of
T12831 100-103 DT denotes the
T12832 112-121 NNS denotes scaffolds
T12833 104-111 JJ denotes genomic
T12834 122-132 VBG denotes containing
T12835 133-136 DT denotes the
T12836 177-182 NNS denotes genes
T12837 137-145 NNP denotes Takifugu
T12838 146-154 NNS denotes rubripes
T12839 155-163 NN denotes trTACC1A
T12840 164-167 CC denotes and
T12841 168-176 NN denotes trTACC1B
T12842 182-183 . denotes .
T12843 183-342 sentence denotes Scaffold 12, the site for the trTACC1A gene contains genes found with either homologues or orthologues on the distal long arm of human chromosome 10 and 4p16.
T12844 184-192 NN denotes Scaffold
T12845 228-236 VBZ denotes contains
T12846 193-195 CD denotes 12
T12847 195-197 , denotes ,
T12848 197-200 DT denotes the
T12849 201-205 NN denotes site
T12850 206-209 IN denotes for
T12851 210-213 DT denotes the
T12852 223-227 NN denotes gene
T12853 214-222 NN denotes trTACC1A
T12854 237-242 NNS denotes genes
T12855 243-248 VBN denotes found
T12856 249-253 IN denotes with
T12857 254-260 CC denotes either
T12858 261-271 NNS denotes homologues
T12859 272-274 CC denotes or
T12860 275-286 NNS denotes orthologues
T12861 287-289 IN denotes on
T12862 290-293 DT denotes the
T12863 306-309 NN denotes arm
T12864 294-300 JJ denotes distal
T12865 301-305 JJ denotes long
T12866 310-312 IN denotes of
T12867 313-318 JJ denotes human
T12868 337-341 NN denotes 4p16
T12869 319-329 NN denotes chromosome
T12870 330-332 CD denotes 10
T12871 333-336 CC denotes and
T12872 341-342 . denotes .
T12873 342-476 sentence denotes This scaffold, therefore, has some of the characteristics of the predicted immediate ancestor of the TACC1/TACC2 chromosomal segment.
T12874 343-347 DT denotes This
T12875 348-356 NN denotes scaffold
T12876 369-372 VBZ denotes has
T12877 356-358 , denotes ,
T12878 358-367 RB denotes therefore
T12879 367-369 , denotes ,
T12880 373-377 DT denotes some
T12881 378-380 IN denotes of
T12882 381-384 DT denotes the
T12883 385-400 NNS denotes characteristics
T12884 401-403 IN denotes of
T12885 404-407 DT denotes the
T12886 428-436 NN denotes ancestor
T12887 408-417 VBN denotes predicted
T12888 418-427 JJ denotes immediate
T12889 437-439 IN denotes of
T12890 440-443 DT denotes the
T12891 468-475 NN denotes segment
T12892 444-449 NN denotes TACC1
T12893 450-455 NN denotes TACC2
T12894 449-450 HYPH denotes /
T12895 456-467 JJ denotes chromosomal
T12896 475-476 . denotes .
T12897 476-602 sentence denotes trTACC1B is found on scaffold 191, which contains orthologues of genes found in the proximal short arm of human chromosome 8.
T12898 477-485 NN denotes trTACC1B
T12899 489-494 VBN denotes found
T12900 486-488 VBZ denotes is
T12901 495-497 IN denotes on
T12902 498-506 NN denotes scaffold
T12903 507-510 CD denotes 191
T12904 510-512 , denotes ,
T12905 512-517 WDT denotes which
T12906 518-526 VBZ denotes contains
T12907 527-538 NNS denotes orthologues
T12908 539-541 IN denotes of
T12909 542-547 NNS denotes genes
T12910 548-553 VBN denotes found
T12911 554-556 IN denotes in
T12912 557-560 DT denotes the
T12913 576-579 NN denotes arm
T12914 561-569 JJ denotes proximal
T12915 570-575 JJ denotes short
T12916 580-582 IN denotes of
T12917 583-588 JJ denotes human
T12918 589-599 NN denotes chromosome
T12919 600-601 CD denotes 8
T12920 601-602 . denotes .
T12921 602-711 sentence denotes (B): Ciona intestinalis clusters containing genes found in paralogous segments on human 8, 4p16, 10q and 5q.
T12922 603-604 -LRB- denotes (
T12923 604-605 LS denotes B
T12924 627-635 NNS denotes clusters
T12925 605-606 -RRB- denotes )
T12926 606-608 : denotes :
T12927 608-613 NNP denotes Ciona
T12928 614-626 NNP denotes intestinalis
T12929 636-646 VBG denotes containing
T12930 647-652 NNS denotes genes
T12931 653-658 VBN denotes found
T12932 659-661 IN denotes in
T12933 662-672 JJ denotes paralogous
T12934 673-681 NNS denotes segments
T12935 682-684 IN denotes on
T12936 685-690 JJ denotes human
T12937 694-698 NN denotes 4p16
T12938 691-692 CD denotes 8
T12939 692-694 , denotes ,
T12940 698-700 , denotes ,
T12941 700-703 NN denotes 10q
T12942 704-707 CC denotes and
T12943 708-710 NN denotes 5q
T12944 710-711 . denotes .
R8282 T12815 T12814 prep of,Formation
R8283 T12816 T12815 pobj protoclusters,of
R8284 T12817 T12814 prep in,Formation
R8285 T12818 T12819 compound Takifugu,rubripes
R8286 T12819 T12817 pobj rubripes,in
R8287 T12820 T12819 cc and,rubripes
R8288 T12821 T12822 compound Ciona,intestinalis
R8289 T12822 T12819 conj intestinalis,rubripes
R8290 T12823 T12814 punct : ,Formation
R8291 T12824 T12825 punct (,A
R8292 T12825 T12827 meta A,Structure
R8293 T12828 T12825 punct ),A
R8294 T12829 T12827 punct : ,Structure
R8295 T12830 T12827 prep of,Structure
R8296 T12831 T12832 det the,scaffolds
R8297 T12832 T12830 pobj scaffolds,of
R8298 T12833 T12832 amod genomic,scaffolds
R8299 T12834 T12832 acl containing,scaffolds
R8300 T12835 T12836 det the,genes
R8301 T12836 T12834 dobj genes,containing
R8302 T12837 T12838 nmod Takifugu,rubripes
R8303 T12838 T12836 nmod rubripes,genes
R8304 T12839 T12836 nmod trTACC1A,genes
R8305 T12840 T12839 cc and,trTACC1A
R8306 T12841 T12839 conj trTACC1B,trTACC1A
R8307 T12842 T12827 punct .,Structure
R8308 T12844 T12845 nsubj Scaffold,contains
R8309 T12846 T12844 nummod 12,Scaffold
R8310 T12847 T12844 punct ", ",Scaffold
R8311 T12848 T12849 det the,site
R8312 T12849 T12844 appos site,Scaffold
R8313 T12850 T12849 prep for,site
R8314 T12851 T12852 det the,gene
R8315 T12852 T12850 pobj gene,for
R8316 T12853 T12852 compound trTACC1A,gene
R8317 T12854 T12845 dobj genes,contains
R8318 T12855 T12854 acl found,genes
R8319 T12856 T12855 prep with,found
R8320 T12857 T12858 preconj either,homologues
R8321 T12858 T12856 pobj homologues,with
R8322 T12859 T12858 cc or,homologues
R8323 T12860 T12858 conj orthologues,homologues
R8324 T12861 T12855 prep on,found
R8325 T12862 T12863 det the,arm
R8326 T12863 T12861 pobj arm,on
R8327 T12864 T12863 amod distal,arm
R8328 T12865 T12863 amod long,arm
R8329 T12866 T12863 prep of,arm
R8330 T12867 T12868 amod human,4p16
R8331 T12868 T12866 pobj 4p16,of
R8332 T12869 T12868 nmod chromosome,4p16
R8333 T12870 T12868 nummod 10,4p16
R8334 T12871 T12868 cc and,4p16
R8335 T12872 T12845 punct .,contains
R8336 T12874 T12875 det This,scaffold
R8337 T12875 T12876 nsubj scaffold,has
R8338 T12877 T12876 punct ", ",has
R8339 T12878 T12876 advmod therefore,has
R8340 T12879 T12876 punct ", ",has
R8341 T12880 T12876 dobj some,has
R8342 T12881 T12880 prep of,some
R8343 T12882 T12883 det the,characteristics
R8344 T12883 T12881 pobj characteristics,of
R8345 T12884 T12883 prep of,characteristics
R8346 T12885 T12886 det the,ancestor
R8347 T12886 T12884 pobj ancestor,of
R8348 T12887 T12886 amod predicted,ancestor
R8349 T12888 T12886 amod immediate,ancestor
R8350 T12889 T12886 prep of,ancestor
R8351 T12890 T12891 det the,segment
R8352 T12891 T12889 pobj segment,of
R8353 T12892 T12893 nmod TACC1,TACC2
R8354 T12893 T12891 nmod TACC2,segment
R8355 T12894 T12893 punct /,TACC2
R8356 T12895 T12891 amod chromosomal,segment
R8357 T12896 T12876 punct .,has
R8358 T12898 T12899 nsubjpass trTACC1B,found
R8359 T12900 T12899 auxpass is,found
R8360 T12901 T12899 prep on,found
R8361 T12902 T12901 pobj scaffold,on
R8362 T12903 T12902 nummod 191,scaffold
R8363 T12904 T12902 punct ", ",scaffold
R8364 T12905 T12906 dep which,contains
R8365 T12906 T12902 relcl contains,scaffold
R8366 T12907 T12906 dobj orthologues,contains
R8367 T12908 T12907 prep of,orthologues
R8368 T12909 T12908 pobj genes,of
R8369 T12910 T12909 acl found,genes
R8370 T12911 T12910 prep in,found
R8371 T12912 T12913 det the,arm
R8372 T12913 T12911 pobj arm,in
R8373 T12914 T12913 amod proximal,arm
R8374 T12915 T12913 amod short,arm
R8375 T12916 T12913 prep of,arm
R8376 T12917 T12918 amod human,chromosome
R8377 T12918 T12916 pobj chromosome,of
R8378 T12919 T12918 nummod 8,chromosome
R8379 T12920 T12899 punct .,found
R8380 T12922 T12923 punct (,B
R8381 T12923 T12924 meta B,clusters
R8382 T12925 T12923 punct ),B
R8383 T12926 T12924 punct : ,clusters
R8384 T12927 T12928 compound Ciona,intestinalis
R8385 T12928 T12924 compound intestinalis,clusters
R8386 T12929 T12924 acl containing,clusters
R8387 T12930 T12929 dobj genes,containing
R8388 T12931 T12930 acl found,genes
R8389 T12932 T12931 prep in,found
R8390 T12933 T12934 amod paralogous,segments
R8391 T12934 T12932 pobj segments,in
R8392 T12935 T12931 prep on,found
R8393 T12936 T12937 amod human,4p16
R8394 T12937 T12935 pobj 4p16,on
R8395 T12938 T12937 nummod 8,4p16
R8396 T12939 T12937 punct ", ",4p16
R8397 T12940 T12937 punct ", ",4p16
R8398 T12941 T12937 conj 10q,4p16
R8399 T12942 T12941 cc and,10q
R8400 T12943 T12941 conj 5q,10q
R8401 T12944 T12924 punct .,clusters

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T12784 40-57 NCBITaxon:31033 denotes Takifugu rubripes
T12785 62-80 NCBITaxon:7719 denotes Ciona intestinalis
T12786 104-111 SO_EXT:0001026 denotes genomic
T12787 112-121 SO_EXT:0001248 denotes scaffolds
T12788 137-154 NCBITaxon:31033 denotes Takifugu rubripes
T12789 177-182 SO_EXT:0000704 denotes genes
T12790 184-192 SO_EXT:0001248 denotes Scaffold
T12791 223-227 SO_EXT:0000704 denotes gene
T12792 237-242 SO_EXT:0000704 denotes genes
T12793 261-271 SO_EXT:0000853 denotes homologues
T12794 275-286 SO_EXT:0000855 denotes orthologues
T12796 306-312,319-329 SO_EXT:0000105 denotes arm of chromosome
T12797 313-318 NCBITaxon:9606 denotes human
T12798 319-329 GO_SO_EXT:chromosome denotes chromosome
T12799 348-356 SO_EXT:0001248 denotes scaffold
T12800 444-449 PR_EXT:000016006 denotes TACC1
T12801 450-455 PR_EXT:000016007 denotes TACC2
T12802 456-475 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal segment
T12803 498-506 SO_EXT:0001248 denotes scaffold
T12804 527-538 SO_EXT:0000855 denotes orthologues
T12805 542-547 SO_EXT:0000704 denotes genes
T12807 576-582,589-599 SO_EXT:0000105 denotes arm of chromosome
T12808 583-588 NCBITaxon:9606 denotes human
T12809 589-599 GO_SO_EXT:chromosome denotes chromosome
T12810 608-626 NCBITaxon:7719 denotes Ciona intestinalis
T12811 647-652 SO_EXT:0000704 denotes genes
T12812 662-681 SO_EXT:0000854 denotes paralogous segments
T12813 685-690 NCBITaxon:9606 denotes human

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T12757 40-57 NCBITaxon:31033 denotes Takifugu rubripes
T12758 62-80 NCBITaxon:7719 denotes Ciona intestinalis
T12759 104-111 SO:0001026 denotes genomic
T12760 112-121 SO:0001248 denotes scaffolds
T12761 137-154 NCBITaxon:31033 denotes Takifugu rubripes
T12762 177-182 SO:0000704 denotes genes
T12763 184-192 SO:0001248 denotes Scaffold
T12764 223-227 SO:0000704 denotes gene
T12765 237-242 SO:0000704 denotes genes
T12766 261-271 SO:0000853 denotes homologues
T12767 275-286 SO:0000855 denotes orthologues
T12769 306-312,319-329 SO:0000105 denotes arm of chromosome
T12770 313-318 NCBITaxon:9606 denotes human
T12771 348-356 SO:0001248 denotes scaffold
T12772 444-449 PR:000016006 denotes TACC1
T12773 450-455 PR:000016007 denotes TACC2
T12774 498-506 SO:0001248 denotes scaffold
T12775 527-538 SO:0000855 denotes orthologues
T12776 542-547 SO:0000704 denotes genes
T12778 576-582,589-599 SO:0000105 denotes arm of chromosome
T12779 583-588 NCBITaxon:9606 denotes human
T12780 608-626 NCBITaxon:7719 denotes Ciona intestinalis
T12781 647-652 SO:0000704 denotes genes
T12782 662-681 SO:0000854 denotes paralogous segments
T12783 685-690 NCBITaxon:9606 denotes human