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PMC:441373 / 16182-16841 JSONTXT

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Id Subject Object Predicate Lexical cue
T12611 0-6 JJ denotes Linear
T12612 7-19 NN denotes organization
T12613 20-22 IN denotes of
T12614 23-27 NN denotes gene
T12615 28-36 NNS denotes clusters
T12616 37-46 VBG denotes centering
T12617 47-51 IN denotes upon
T12618 52-55 DT denotes the
T12619 68-72 NNS denotes loci
T12620 56-67 JJ denotes chromosomal
T12621 73-75 IN denotes of
T12622 76-79 DT denotes the
T12623 85-90 NNS denotes genes
T12624 80-84 NN denotes FGFR
T12625 91-93 IN denotes in
T12626 94-100 NNS denotes humans
T12627 100-101 . denotes .
T12628 101-388 sentence denotes Paralogous genes present in at least two of the four loci are shown, with the exception of the region between GPX3 and NKX2E on chromosome 5, which appears to represent a series of intervening genes inserted after duplication of the 4p16/5q32-35 clusters, and genes mentioned in Fig. 3.
T12629 102-112 JJ denotes Paralogous
T12630 113-118 NNS denotes genes
T12631 164-169 VBN denotes shown
T12632 119-126 JJ denotes present
T12633 127-129 IN denotes in
T12634 130-132 RB denotes at
T12635 139-142 CD denotes two
T12636 133-138 RBS denotes least
T12637 143-145 IN denotes of
T12638 146-149 DT denotes the
T12639 155-159 NNS denotes loci
T12640 150-154 CD denotes four
T12641 160-163 VBP denotes are
T12642 169-171 , denotes ,
T12643 171-175 IN denotes with
T12644 176-179 DT denotes the
T12645 180-189 NN denotes exception
T12646 190-192 IN denotes of
T12647 193-196 DT denotes the
T12648 197-203 NN denotes region
T12649 204-211 IN denotes between
T12650 212-216 NN denotes GPX3
T12651 217-220 CC denotes and
T12652 221-226 NN denotes NKX2E
T12653 227-229 IN denotes on
T12654 230-240 NN denotes chromosome
T12655 241-242 CD denotes 5
T12656 242-244 , denotes ,
T12657 244-249 WDT denotes which
T12658 250-257 VBZ denotes appears
T12659 258-260 TO denotes to
T12660 261-270 VB denotes represent
T12661 271-272 DT denotes a
T12662 273-279 NN denotes series
T12663 280-282 IN denotes of
T12664 283-294 VBG denotes intervening
T12665 295-300 NNS denotes genes
T12666 301-309 VBN denotes inserted
T12667 310-315 IN denotes after
T12668 316-327 NN denotes duplication
T12669 328-330 IN denotes of
T12670 331-334 DT denotes the
T12671 348-356 NNS denotes clusters
T12672 335-339 NN denotes 4p16
T12673 340-344 NN denotes 5q32
T12674 339-340 HYPH denotes /
T12675 344-345 HYPH denotes -
T12676 345-347 CD denotes 35
T12677 356-358 , denotes ,
T12678 358-361 CC denotes and
T12679 362-367 NNS denotes genes
T12680 368-377 VBN denotes mentioned
T12681 378-380 IN denotes in
T12682 381-385 NN denotes Fig.
T12683 386-387 CD denotes 3
T12684 387-388 . denotes .
T12685 388-458 sentence denotes Corresponding syntenic mouse chromosomal regions (mm*) are indicated.
T12686 389-402 VBG denotes Corresponding
T12687 430-437 NNS denotes regions
T12688 403-411 JJ denotes syntenic
T12689 412-417 NN denotes mouse
T12690 418-429 JJ denotes chromosomal
T12691 448-457 VBN denotes indicated
T12692 438-439 -LRB- denotes (
T12693 439-441 NNP denotes mm
T12694 441-442 SYM denotes *
T12695 442-443 -RRB- denotes )
T12696 444-447 VBP denotes are
T12697 457-458 . denotes .
T12698 458-566 sentence denotes Takifugu rubripes scaffolds are shown (TR*) that contain more than one homologous gene from these clusters.
T12699 459-467 NNP denotes Takifugu
T12700 468-476 NNP denotes rubripes
T12701 477-486 NNS denotes scaffolds
T12702 491-496 VBN denotes shown
T12703 487-490 VBP denotes are
T12704 497-498 -LRB- denotes (
T12705 498-500 NN denotes TR
T12706 500-501 SYM denotes *
T12707 501-502 -RRB- denotes )
T12708 503-507 WDT denotes that
T12709 508-515 VBP denotes contain
T12710 516-520 JJR denotes more
T12711 526-529 CD denotes one
T12712 521-525 IN denotes than
T12713 541-545 NN denotes gene
T12714 530-540 JJ denotes homologous
T12715 546-550 IN denotes from
T12716 551-556 DT denotes these
T12717 557-565 NNS denotes clusters
T12718 565-566 . denotes .
T12719 566-659 sentence denotes Further details on the location of paralogous genes can be found in [see Additional file 1].
T12720 567-574 JJ denotes Further
T12721 575-582 NNS denotes details
T12722 626-631 VBN denotes found
T12723 583-585 IN denotes on
T12724 586-589 DT denotes the
T12725 590-598 NN denotes location
T12726 599-601 IN denotes of
T12727 602-612 JJ denotes paralogous
T12728 613-618 NNS denotes genes
T12729 619-622 MD denotes can
T12730 623-625 VB denotes be
T12731 632-634 IN denotes in
T12732 635-636 -LRB- denotes [
T12733 636-639 VB denotes see
T12734 640-650 JJ denotes Additional
T12735 651-655 NN denotes file
T12736 656-657 CD denotes 1
T12737 657-658 -RRB- denotes ]
T12738 658-659 . denotes .
R8159 T12611 T12612 amod Linear,organization
R8160 T12613 T12612 prep of,organization
R8161 T12614 T12615 compound gene,clusters
R8162 T12615 T12613 pobj clusters,of
R8163 T12616 T12612 acl centering,organization
R8164 T12617 T12616 prep upon,centering
R8165 T12618 T12619 det the,loci
R8166 T12619 T12617 pobj loci,upon
R8167 T12620 T12619 amod chromosomal,loci
R8168 T12621 T12619 prep of,loci
R8169 T12622 T12623 det the,genes
R8170 T12623 T12621 pobj genes,of
R8171 T12624 T12623 compound FGFR,genes
R8172 T12625 T12619 prep in,loci
R8173 T12626 T12625 pobj humans,in
R8174 T12627 T12612 punct .,organization
R8175 T12629 T12630 amod Paralogous,genes
R8176 T12630 T12631 nsubjpass genes,shown
R8177 T12632 T12630 amod present,genes
R8178 T12633 T12632 prep in,present
R8179 T12634 T12635 advmod at,two
R8180 T12635 T12633 pobj two,in
R8181 T12636 T12635 advmod least,two
R8182 T12637 T12635 prep of,two
R8183 T12638 T12639 det the,loci
R8184 T12639 T12637 pobj loci,of
R8185 T12640 T12639 nummod four,loci
R8186 T12641 T12631 auxpass are,shown
R8187 T12642 T12631 punct ", ",shown
R8188 T12643 T12631 prep with,shown
R8189 T12644 T12645 det the,exception
R8190 T12645 T12643 pobj exception,with
R8191 T12646 T12645 prep of,exception
R8192 T12647 T12648 det the,region
R8193 T12648 T12646 pobj region,of
R8194 T12649 T12648 prep between,region
R8195 T12650 T12649 pobj GPX3,between
R8196 T12651 T12650 cc and,GPX3
R8197 T12652 T12650 conj NKX2E,GPX3
R8198 T12653 T12650 prep on,GPX3
R8199 T12654 T12653 pobj chromosome,on
R8200 T12655 T12654 nummod 5,chromosome
R8201 T12656 T12648 punct ", ",region
R8202 T12657 T12658 dep which,appears
R8203 T12658 T12648 relcl appears,region
R8204 T12659 T12660 aux to,represent
R8205 T12660 T12658 xcomp represent,appears
R8206 T12661 T12662 det a,series
R8207 T12662 T12660 dobj series,represent
R8208 T12663 T12662 prep of,series
R8209 T12664 T12665 amod intervening,genes
R8210 T12665 T12663 pobj genes,of
R8211 T12666 T12662 acl inserted,series
R8212 T12667 T12666 prep after,inserted
R8213 T12668 T12667 pobj duplication,after
R8214 T12669 T12668 prep of,duplication
R8215 T12670 T12671 det the,clusters
R8216 T12671 T12669 pobj clusters,of
R8217 T12672 T12673 nmod 4p16,5q32
R8218 T12673 T12671 nmod 5q32,clusters
R8219 T12674 T12673 punct /,5q32
R8220 T12675 T12673 punct -,5q32
R8221 T12676 T12673 nummod 35,5q32
R8222 T12677 T12648 punct ", ",region
R8223 T12678 T12648 cc and,region
R8224 T12679 T12648 conj genes,region
R8225 T12680 T12679 acl mentioned,genes
R8226 T12681 T12680 prep in,mentioned
R8227 T12682 T12681 pobj Fig.,in
R8228 T12683 T12682 nummod 3,Fig.
R8229 T12684 T12631 punct .,shown
R8230 T12686 T12687 amod Corresponding,regions
R8231 T12687 T12691 nsubjpass regions,indicated
R8232 T12688 T12687 amod syntenic,regions
R8233 T12689 T12687 nmod mouse,regions
R8234 T12690 T12687 amod chromosomal,regions
R8235 T12692 T12693 punct (,mm
R8236 T12693 T12687 parataxis mm,regions
R8237 T12694 T12693 punct *,mm
R8238 T12695 T12693 punct ),mm
R8239 T12696 T12691 auxpass are,indicated
R8240 T12697 T12691 punct .,indicated
R8241 T12699 T12700 compound Takifugu,rubripes
R8242 T12700 T12701 compound rubripes,scaffolds
R8243 T12701 T12702 nsubjpass scaffolds,shown
R8244 T12703 T12702 auxpass are,shown
R8245 T12704 T12705 punct (,TR
R8246 T12705 T12702 parataxis TR,shown
R8247 T12706 T12705 punct *,TR
R8248 T12707 T12705 punct ),TR
R8249 T12708 T12709 dep that,contain
R8250 T12709 T12702 ccomp contain,shown
R8251 T12710 T12711 amod more,one
R8252 T12711 T12713 nummod one,gene
R8253 T12712 T12711 quantmod than,one
R8254 T12713 T12709 dobj gene,contain
R8255 T12714 T12713 amod homologous,gene
R8256 T12715 T12713 prep from,gene
R8257 T12716 T12717 det these,clusters
R8258 T12717 T12715 pobj clusters,from
R8259 T12718 T12702 punct .,shown
R8260 T12720 T12721 amod Further,details
R8261 T12721 T12722 nsubjpass details,found
R8262 T12723 T12721 prep on,details
R8263 T12724 T12725 det the,location
R8264 T12725 T12723 pobj location,on
R8265 T12726 T12725 prep of,location
R8266 T12727 T12728 amod paralogous,genes
R8267 T12728 T12726 pobj genes,of
R8268 T12729 T12722 aux can,found
R8269 T12730 T12722 auxpass be,found
R8270 T12731 T12722 prep in,found
R8271 T12732 T12733 punct [,see
R8272 T12733 T12731 pcomp see,in
R8273 T12734 T12735 amod Additional,file
R8274 T12735 T12733 dobj file,see
R8275 T12736 T12735 nummod 1,file
R8276 T12737 T12733 punct ],see
R8277 T12738 T12722 punct .,found

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12592 197-203 _FRAGMENT denotes region
T12593 227-240 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes on chromosome
T12594 212-216 PR_EXT:000008212 denotes GPX3
T12595 221-226 PR_EXT:000011245 denotes NKX2E
T12596 230-240 GO_SO_EXT:chromosome denotes chromosome
T12597 295-300 SO_EXT:0000704 denotes genes
T12598 301-309 SO_EXT:sequence_insertion_process denotes inserted
T12599 316-327 SO_EXT:sequence_duplication_entity_or_process denotes duplication
T12600 362-367 SO_EXT:0000704 denotes genes
T12601 403-411 _FRAGMENT denotes syntenic
T12602 430-437 SO_EXT:0005858 denotes regions
T12603 412-417 NCBITaxon:10088 denotes mouse
T12604 418-437 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal regions
T12605 459-476 NCBITaxon:31033 denotes Takifugu rubripes
T12606 477-486 SO_EXT:0001248 denotes scaffolds
T12607 530-540 SO:0000857 denotes homologous
T12608 541-545 SO_EXT:0000704 denotes gene
T12609 602-612 SO:0000859 denotes paralogous
T12610 613-618 SO_EXT:0000704 denotes genes
T12584 0-6 SO:0000987 denotes Linear
T12585 23-27 SO_EXT:0000704 denotes gene
T12586 56-72 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal loci
T12587 80-84 GO_PR_EXT:fibroblast_growth_factor_receptor denotes FGFR
T12588 85-90 SO_EXT:0000704 denotes genes
T12589 94-100 NCBITaxon:9606 denotes humans
T12590 102-112 SO:0000859 denotes Paralogous
T12591 113-118 SO_EXT:0000704 denotes genes
R8157 T12593 T12592 _lexicallyChainedTo on chromosome,region
R8158 T12602 T12601 _lexicallyChainedTo regions,syntenic

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12565 0-6 SO:0000987 denotes Linear
T12566 23-27 SO:0000704 denotes gene
T12567 85-90 SO:0000704 denotes genes
T12568 94-100 NCBITaxon:9606 denotes humans
T12569 102-112 SO:0000859 denotes Paralogous
T12570 113-118 SO:0000704 denotes genes
T12571 212-216 PR:000008212 denotes GPX3
T12572 221-226 PR:000011245 denotes NKX2E
T12573 295-300 SO:0000704 denotes genes
T12574 362-367 SO:0000704 denotes genes
T12575 403-411 _FRAGMENT denotes syntenic
T12576 430-437 SO:0005858 denotes regions
T12577 412-417 NCBITaxon:10088 denotes mouse
T12578 459-476 NCBITaxon:31033 denotes Takifugu rubripes
T12579 477-486 SO:0001248 denotes scaffolds
T12580 530-540 SO:0000857 denotes homologous
T12581 541-545 SO:0000704 denotes gene
T12582 602-612 SO:0000859 denotes paralogous
T12583 613-618 SO:0000704 denotes genes
R8156 T12576 T12575 _lexicallyChainedTo regions,syntenic