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PMC:441373 / 16172-16841 JSONTXT

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Id Subject Object Predicate Lexical cue
T12611 10-16 JJ denotes Linear
T12612 17-29 NN denotes organization
T12613 30-32 IN denotes of
T12614 33-37 NN denotes gene
T12615 38-46 NNS denotes clusters
T12616 47-56 VBG denotes centering
T12617 57-61 IN denotes upon
T12618 62-65 DT denotes the
T12619 78-82 NNS denotes loci
T12620 66-77 JJ denotes chromosomal
T12621 83-85 IN denotes of
T12622 86-89 DT denotes the
T12623 95-100 NNS denotes genes
T12624 90-94 NN denotes FGFR
T12625 101-103 IN denotes in
T12626 104-110 NNS denotes humans
T12627 110-111 . denotes .
T12628 111-398 sentence denotes Paralogous genes present in at least two of the four loci are shown, with the exception of the region between GPX3 and NKX2E on chromosome 5, which appears to represent a series of intervening genes inserted after duplication of the 4p16/5q32-35 clusters, and genes mentioned in Fig. 3.
T12629 112-122 JJ denotes Paralogous
T12630 123-128 NNS denotes genes
T12631 174-179 VBN denotes shown
T12632 129-136 JJ denotes present
T12633 137-139 IN denotes in
T12634 140-142 RB denotes at
T12635 149-152 CD denotes two
T12636 143-148 RBS denotes least
T12637 153-155 IN denotes of
T12638 156-159 DT denotes the
T12639 165-169 NNS denotes loci
T12640 160-164 CD denotes four
T12641 170-173 VBP denotes are
T12642 179-181 , denotes ,
T12643 181-185 IN denotes with
T12644 186-189 DT denotes the
T12645 190-199 NN denotes exception
T12646 200-202 IN denotes of
T12647 203-206 DT denotes the
T12648 207-213 NN denotes region
T12649 214-221 IN denotes between
T12650 222-226 NN denotes GPX3
T12651 227-230 CC denotes and
T12652 231-236 NN denotes NKX2E
T12653 237-239 IN denotes on
T12654 240-250 NN denotes chromosome
T12655 251-252 CD denotes 5
T12656 252-254 , denotes ,
T12657 254-259 WDT denotes which
T12658 260-267 VBZ denotes appears
T12659 268-270 TO denotes to
T12660 271-280 VB denotes represent
T12661 281-282 DT denotes a
T12662 283-289 NN denotes series
T12663 290-292 IN denotes of
T12664 293-304 VBG denotes intervening
T12665 305-310 NNS denotes genes
T12666 311-319 VBN denotes inserted
T12667 320-325 IN denotes after
T12668 326-337 NN denotes duplication
T12669 338-340 IN denotes of
T12670 341-344 DT denotes the
T12671 358-366 NNS denotes clusters
T12672 345-349 NN denotes 4p16
T12673 350-354 NN denotes 5q32
T12674 349-350 HYPH denotes /
T12675 354-355 HYPH denotes -
T12676 355-357 CD denotes 35
T12677 366-368 , denotes ,
T12678 368-371 CC denotes and
T12679 372-377 NNS denotes genes
T12680 378-387 VBN denotes mentioned
T12681 388-390 IN denotes in
T12682 391-395 NN denotes Fig.
T12683 396-397 CD denotes 3
T12684 397-398 . denotes .
T12685 398-468 sentence denotes Corresponding syntenic mouse chromosomal regions (mm*) are indicated.
T12686 399-412 VBG denotes Corresponding
T12687 440-447 NNS denotes regions
T12688 413-421 JJ denotes syntenic
T12689 422-427 NN denotes mouse
T12690 428-439 JJ denotes chromosomal
T12691 458-467 VBN denotes indicated
T12692 448-449 -LRB- denotes (
T12693 449-451 NNP denotes mm
T12694 451-452 SYM denotes *
T12695 452-453 -RRB- denotes )
T12696 454-457 VBP denotes are
T12697 467-468 . denotes .
T12698 468-576 sentence denotes Takifugu rubripes scaffolds are shown (TR*) that contain more than one homologous gene from these clusters.
T12699 469-477 NNP denotes Takifugu
T12700 478-486 NNP denotes rubripes
T12701 487-496 NNS denotes scaffolds
T12702 501-506 VBN denotes shown
T12703 497-500 VBP denotes are
T12704 507-508 -LRB- denotes (
T12705 508-510 NN denotes TR
T12706 510-511 SYM denotes *
T12707 511-512 -RRB- denotes )
T12708 513-517 WDT denotes that
T12709 518-525 VBP denotes contain
T12710 526-530 JJR denotes more
T12711 536-539 CD denotes one
T12712 531-535 IN denotes than
T12713 551-555 NN denotes gene
T12714 540-550 JJ denotes homologous
T12715 556-560 IN denotes from
T12716 561-566 DT denotes these
T12717 567-575 NNS denotes clusters
T12718 575-576 . denotes .
T12719 576-669 sentence denotes Further details on the location of paralogous genes can be found in [see Additional file 1].
T12720 577-584 JJ denotes Further
T12721 585-592 NNS denotes details
T12722 636-641 VBN denotes found
T12723 593-595 IN denotes on
T12724 596-599 DT denotes the
T12725 600-608 NN denotes location
T12726 609-611 IN denotes of
T12727 612-622 JJ denotes paralogous
T12728 623-628 NNS denotes genes
T12729 629-632 MD denotes can
T12730 633-635 VB denotes be
T12731 642-644 IN denotes in
T12732 645-646 -LRB- denotes [
T12733 646-649 VB denotes see
T12734 650-660 JJ denotes Additional
T12735 661-665 NN denotes file
T12736 666-667 CD denotes 1
T12737 667-668 -RRB- denotes ]
T12738 668-669 . denotes .
R8159 T12611 T12612 amod Linear,organization
R8160 T12613 T12612 prep of,organization
R8161 T12614 T12615 compound gene,clusters
R8162 T12615 T12613 pobj clusters,of
R8163 T12616 T12612 acl centering,organization
R8164 T12617 T12616 prep upon,centering
R8165 T12618 T12619 det the,loci
R8166 T12619 T12617 pobj loci,upon
R8167 T12620 T12619 amod chromosomal,loci
R8168 T12621 T12619 prep of,loci
R8169 T12622 T12623 det the,genes
R8170 T12623 T12621 pobj genes,of
R8171 T12624 T12623 compound FGFR,genes
R8172 T12625 T12619 prep in,loci
R8173 T12626 T12625 pobj humans,in
R8174 T12627 T12612 punct .,organization
R8175 T12629 T12630 amod Paralogous,genes
R8176 T12630 T12631 nsubjpass genes,shown
R8177 T12632 T12630 amod present,genes
R8178 T12633 T12632 prep in,present
R8179 T12634 T12635 advmod at,two
R8180 T12635 T12633 pobj two,in
R8181 T12636 T12635 advmod least,two
R8182 T12637 T12635 prep of,two
R8183 T12638 T12639 det the,loci
R8184 T12639 T12637 pobj loci,of
R8185 T12640 T12639 nummod four,loci
R8186 T12641 T12631 auxpass are,shown
R8187 T12642 T12631 punct ", ",shown
R8188 T12643 T12631 prep with,shown
R8189 T12644 T12645 det the,exception
R8190 T12645 T12643 pobj exception,with
R8191 T12646 T12645 prep of,exception
R8192 T12647 T12648 det the,region
R8193 T12648 T12646 pobj region,of
R8194 T12649 T12648 prep between,region
R8195 T12650 T12649 pobj GPX3,between
R8196 T12651 T12650 cc and,GPX3
R8197 T12652 T12650 conj NKX2E,GPX3
R8198 T12653 T12650 prep on,GPX3
R8199 T12654 T12653 pobj chromosome,on
R8200 T12655 T12654 nummod 5,chromosome
R8201 T12656 T12648 punct ", ",region
R8202 T12657 T12658 dep which,appears
R8203 T12658 T12648 relcl appears,region
R8204 T12659 T12660 aux to,represent
R8205 T12660 T12658 xcomp represent,appears
R8206 T12661 T12662 det a,series
R8207 T12662 T12660 dobj series,represent
R8208 T12663 T12662 prep of,series
R8209 T12664 T12665 amod intervening,genes
R8210 T12665 T12663 pobj genes,of
R8211 T12666 T12662 acl inserted,series
R8212 T12667 T12666 prep after,inserted
R8213 T12668 T12667 pobj duplication,after
R8214 T12669 T12668 prep of,duplication
R8215 T12670 T12671 det the,clusters
R8216 T12671 T12669 pobj clusters,of
R8217 T12672 T12673 nmod 4p16,5q32
R8218 T12673 T12671 nmod 5q32,clusters
R8219 T12674 T12673 punct /,5q32
R8220 T12675 T12673 punct -,5q32
R8221 T12676 T12673 nummod 35,5q32
R8222 T12677 T12648 punct ", ",region
R8223 T12678 T12648 cc and,region
R8224 T12679 T12648 conj genes,region
R8225 T12680 T12679 acl mentioned,genes
R8226 T12681 T12680 prep in,mentioned
R8227 T12682 T12681 pobj Fig.,in
R8228 T12683 T12682 nummod 3,Fig.
R8229 T12684 T12631 punct .,shown
R8230 T12686 T12687 amod Corresponding,regions
R8231 T12687 T12691 nsubjpass regions,indicated
R8232 T12688 T12687 amod syntenic,regions
R8233 T12689 T12687 nmod mouse,regions
R8234 T12690 T12687 amod chromosomal,regions
R8235 T12692 T12693 punct (,mm
R8236 T12693 T12687 parataxis mm,regions
R8237 T12694 T12693 punct *,mm
R8238 T12695 T12693 punct ),mm
R8239 T12696 T12691 auxpass are,indicated
R8240 T12697 T12691 punct .,indicated
R8241 T12699 T12700 compound Takifugu,rubripes
R8242 T12700 T12701 compound rubripes,scaffolds
R8243 T12701 T12702 nsubjpass scaffolds,shown
R8244 T12703 T12702 auxpass are,shown
R8245 T12704 T12705 punct (,TR
R8246 T12705 T12702 parataxis TR,shown
R8247 T12706 T12705 punct *,TR
R8248 T12707 T12705 punct ),TR
R8249 T12708 T12709 dep that,contain
R8250 T12709 T12702 ccomp contain,shown
R8251 T12710 T12711 amod more,one
R8252 T12711 T12713 nummod one,gene
R8253 T12712 T12711 quantmod than,one
R8254 T12713 T12709 dobj gene,contain
R8255 T12714 T12713 amod homologous,gene
R8256 T12715 T12713 prep from,gene
R8257 T12716 T12717 det these,clusters
R8258 T12717 T12715 pobj clusters,from
R8259 T12718 T12702 punct .,shown
R8260 T12720 T12721 amod Further,details
R8261 T12721 T12722 nsubjpass details,found
R8262 T12723 T12721 prep on,details
R8263 T12724 T12725 det the,location
R8264 T12725 T12723 pobj location,on
R8265 T12726 T12725 prep of,location
R8266 T12727 T12728 amod paralogous,genes
R8267 T12728 T12726 pobj genes,of
R8268 T12729 T12722 aux can,found
R8269 T12730 T12722 auxpass be,found
R8270 T12731 T12722 prep in,found
R8271 T12732 T12733 punct [,see
R8272 T12733 T12731 pcomp see,in
R8273 T12734 T12735 amod Additional,file
R8274 T12735 T12733 dobj file,see
R8275 T12736 T12735 nummod 1,file
R8276 T12737 T12733 punct ],see
R8277 T12738 T12722 punct .,found

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12592 207-213 _FRAGMENT denotes region
T12593 237-250 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes on chromosome
T12594 222-226 PR_EXT:000008212 denotes GPX3
T12595 231-236 PR_EXT:000011245 denotes NKX2E
T12596 240-250 GO_SO_EXT:chromosome denotes chromosome
T12597 305-310 SO_EXT:0000704 denotes genes
T12598 311-319 SO_EXT:sequence_insertion_process denotes inserted
T12599 326-337 SO_EXT:sequence_duplication_entity_or_process denotes duplication
T12600 372-377 SO_EXT:0000704 denotes genes
T12601 413-421 _FRAGMENT denotes syntenic
T12602 440-447 SO_EXT:0005858 denotes regions
T12603 422-427 NCBITaxon:10088 denotes mouse
T12604 428-447 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal regions
T12605 469-486 NCBITaxon:31033 denotes Takifugu rubripes
T12606 487-496 SO_EXT:0001248 denotes scaffolds
T12607 540-550 SO:0000857 denotes homologous
T12608 551-555 SO_EXT:0000704 denotes gene
T12609 612-622 SO:0000859 denotes paralogous
T12610 623-628 SO_EXT:0000704 denotes genes
T12584 10-16 SO:0000987 denotes Linear
T12585 33-37 SO_EXT:0000704 denotes gene
T12586 66-82 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal loci
T12587 90-94 GO_PR_EXT:fibroblast_growth_factor_receptor denotes FGFR
T12588 95-100 SO_EXT:0000704 denotes genes
T12589 104-110 NCBITaxon:9606 denotes humans
T12590 112-122 SO:0000859 denotes Paralogous
T12591 123-128 SO_EXT:0000704 denotes genes
R8157 T12593 T12592 _lexicallyChainedTo on chromosome,region
R8158 T12602 T12601 _lexicallyChainedTo regions,syntenic

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12565 10-16 SO:0000987 denotes Linear
T12566 33-37 SO:0000704 denotes gene
T12567 95-100 SO:0000704 denotes genes
T12568 104-110 NCBITaxon:9606 denotes humans
T12569 112-122 SO:0000859 denotes Paralogous
T12570 123-128 SO:0000704 denotes genes
T12571 222-226 PR:000008212 denotes GPX3
T12572 231-236 PR:000011245 denotes NKX2E
T12573 305-310 SO:0000704 denotes genes
T12574 372-377 SO:0000704 denotes genes
T12575 413-421 _FRAGMENT denotes syntenic
T12576 440-447 SO:0005858 denotes regions
T12577 422-427 NCBITaxon:10088 denotes mouse
T12578 469-486 NCBITaxon:31033 denotes Takifugu rubripes
T12579 487-496 SO:0001248 denotes scaffolds
T12580 540-550 SO:0000857 denotes homologous
T12581 551-555 SO:0000704 denotes gene
T12582 612-622 SO:0000859 denotes paralogous
T12583 623-628 SO:0000704 denotes genes
R8156 T12576 T12575 _lexicallyChainedTo regions,syntenic