PMC:4331678 / 38962-39916 JSONTXT

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{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/4331678","sourcedb":"PMC","sourceid":"4331678","source_url":"https://www.ncbi.nlm.nih.gov/pmc/4331678","text":"Another interesting observation for Figure 6 in the Additional File 1 is that MNet, SW, and ProMK give the highest Fmax value to the 1st network of the Human dataset (annotated with MF functions), instead of to the 6-th network. In the Human dataset, the 1st network is derived from protein domain composition and the 6-th is a PPI network. This observation supports the statement that different data sources have different correlation with the GO terms. Lan et al. [7] also observed that the prediction of MF functions using sequence similarity is more accurate than that based on PPI information, and the prediction of BP functions based on PPI networks is more reliable than that based on sequence similarity. Regardless of this difference for the proteins of Human annotated with MF functions, MNet shows similar trends for the weight and the Fmax values assigned to the individual networks. In contrast, neither SW nor ProMK manifests such behavior.","tracks":[{"project":"2_test","denotations":[{"id":"25707434-23514608-14839093","span":{"begin":467,"end":468},"obj":"23514608"}],"attributes":[{"subj":"25707434-23514608-14839093","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#ec9693","default":true}]}]}}