PMC:4331675 / 4268-5685 JSONTXT

{"project":"2_test","denotations":[{"id":"25708840-15461798-14883596","span":{"begin":677,"end":679},"obj":"15461798"}],"text":"Environment and technologies\nR is a software environment that can be run on a variety of UNIX platforms, as well as Windows and Mac OS. This package employs R to analyze input files and output results in the HyperText Markup Language (HTML) format. In HTML files, PPI networks are displayed as Force-Directed Graphs with JavaScript library D3. To maintain consistency across different browsers, HTML files follow the HTML 4.01 Strict standard, HTML 5 experimental standard, and CSS version 3 standard. Thus, different browsers such as Chrome, Firefox, Safari, Opera and IE10, consistently display the output.\nThis cisPath package is available through the Bioconductor Project [10]. For users of cloud servers, RStudio is recommended as it enables primary users to provide a browser-based interface of a version of R running on a remote Linux server. Louis Aslett has provided various kinds of Amazon Machine Images (AMIs) which make deploying an RStudio Server very fast and easy [11]. These AMIs are highly recommended, especially for free micro instance users. The Bioconductor team has also developed AMIs optimized for running Bioconductor packages with the Amazon Elastic Compute Cloud (EC2) [12]. Users without any cloud services experience can easily launch the AMI using instructions on the Bioconductor website. An introduction on the use of this package for R beginners is also available on our website [9]."}