PMC:4331675 / 18210-19777 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/4331675","sourcedb":"PMC","sourceid":"4331675","source_url":"https://www.ncbi.nlm.nih.gov/pmc/4331675","text":"Conclusions\nThis cisPath package allows great convenience for cloud users who wish to visualize and manage functional protein interaction networks. With this package, PPI data from different databases can be integrated and used to deduce network graphs from one or several given proteins. This package can also identify the shortest interaction paths between a pair of proteins. Published evidence of interactions from different databases is present in the output HTML files. The graph editor adds a further layer of functionality, allowing different kinds of network views to be drawn according to user preference. With an RStudio server, molecular biologists can run cisPath functions and easily view results on mobile devices via web browsers. For cloud users, the Amazon EC2 service with AMIs which were generated by Louis Aslett is recommended [11]. One micro instance which is available free of cost is sufficient to launch the AMI and run this package.\nIn developing this cisPath package, one of our main aims is to offer an easy-to-use tool for mobile devices and panel PCs that is accessible through the browser. Therefore only functions that can be easily operated on mobile devices are included. A number of other functions, although useful, were excluded from the package, as they were deemed unsuitable for mobile use. We hope that with this tool, users will now be able to evaluate their ideas concerning protein interactions through visualization and management of protein networks, and limitations of time and location will become a thing of the past.","divisions":[{"label":"Title","span":{"begin":0,"end":11}}],"tracks":[]}