PMC:4156421 / 15775-16548 JSONTXT

{"project":"2_test","denotations":[{"id":"25192356-23583980-90446766","span":{"begin":350,"end":352},"obj":"23583980"},{"id":"25192356-23583980-90446767","span":{"begin":427,"end":429},"obj":"23583980"},{"id":"25192356-24429156-90446768","span":{"begin":501,"end":503},"obj":"24429156"},{"id":"25192356-21506748-90446769","span":{"begin":506,"end":508},"obj":"21506748"},{"id":"25192356-23940607-90446770","span":{"begin":512,"end":514},"obj":"23940607"},{"id":"25192356-23583980-90446771","span":{"begin":591,"end":593},"obj":"23583980"},{"id":"25192356-24429156-90446772","span":{"begin":663,"end":665},"obj":"24429156"},{"id":"25192356-24429156-90446773","span":{"begin":736,"end":738},"obj":"24429156"}],"text":"Table 2 Variants associated with IPF that were also seen in this individual. Allele frequencies accessed 4/16/2014.\nNearest Gene SNP ID Chromosome Position Variant Type Minor Allele Major Allele Patient Genotype MAF (1000 Genomes) OR Reference\nAZGP1 (AZGP1P1 pseudogene) rs4727443 7 99593346 intergenic A C C/A 0.411 1.3A 1.11B [13]\nMAPT rs1981997 17 44056767 intronic A G A/G 0.117 0.71A 0.67B [13]\nMUC5B rs35705950 11 1241221 promoter T G T/G 0.052 2.4–6.8 [10]–[14], [16]\nOBFC1 rs11191865 10 105672842 intronic G A A/G 0.584 0.8A 0.87B [13]\nTOLLIP rs5743890 11 1325829 Intronic C T C/T 0.0702 0.61 [10]\nSPPL2C rs17690703 17 43925297 Intronic T C C/T 0.1543 0.7 [10]\nA Discovery and Breplicate GWAS."}

{"project":"PubTator4TogoVar","denotations":[{"id":"27649","span":{"begin":282,"end":292},"obj":"SNP"},{"id":"27652","span":{"begin":359,"end":369},"obj":"SNP"},{"id":"27653","span":{"begin":437,"end":448},"obj":"SNP"}],"attributes":[{"id":"A27649","pred":"resolved_to","subj":"27649","obj":"tmVar:rs4727443;VariantGroup:6;RS#:4727443"},{"id":"A27652","pred":"resolved_to","subj":"27652","obj":"tmVar:rs1981997;VariantGroup:25;CorrespondingGene:4137;RS#:1981997;CorrespondingSpecies:9606"},{"id":"A27653","pred":"resolved_to","subj":"27653","obj":"tmVar:rs35705950;VariantGroup:27;RS#:35705950"}],"text":"Table 2 Variants associated with IPF that were also seen in this individual. Allele frequencies accessed 4/16/2014.\nNearest Gene SNP ID Chromosome Position Variant Type Minor Allele Major Allele Patient Genotype MAF (1000 Genomes) OR Reference\nAZGP1 (AZGP1P1 pseudogene) rs4727443 7 99593346 intergenic A C C/A 0.411 1.3A 1.11B [13]\nMAPT rs1981997 17 44056767 intronic A G A/G 0.117 0.71A 0.67B [13]\nMUC5B rs35705950 11 1241221 promoter T G T/G 0.052 2.4–6.8 [10]–[14], [16]\nOBFC1 rs11191865 10 105672842 intronic G A A/G 0.584 0.8A 0.87B [13]\nTOLLIP rs5743890 11 1325829 Intronic C T C/T 0.0702 0.61 [10]\nSPPL2C rs17690703 17 43925297 Intronic T C C/T 0.1543 0.7 [10]\nA Discovery and Breplicate GWAS."}

{"project":"PubTatorOnTogoVar","denotations":[{"id":"27649","span":{"begin":282,"end":292},"obj":"SNP"},{"id":"27652","span":{"begin":359,"end":369},"obj":"SNP"},{"id":"27653","span":{"begin":437,"end":448},"obj":"SNP"},{"id":"T1","span":{"begin":282,"end":292},"obj":"SNP"},{"id":"T2","span":{"begin":359,"end":369},"obj":"SNP"},{"id":"T3","span":{"begin":437,"end":448},"obj":"SNP"}],"attributes":[{"id":"A27649","pred":"resolved_to","subj":"27649","obj":"tmVar:rs4727443;VariantGroup:6;RS#:4727443"},{"id":"A27652","pred":"resolved_to","subj":"27652","obj":"tmVar:rs1981997;VariantGroup:25;CorrespondingGene:4137;RS#:1981997;CorrespondingSpecies:9606"},{"id":"A27653","pred":"resolved_to","subj":"27653","obj":"tmVar:rs35705950;VariantGroup:27;RS#:35705950"}],"text":"Table 2 Variants associated with IPF that were also seen in this individual. Allele frequencies accessed 4/16/2014.\nNearest Gene SNP ID Chromosome Position Variant Type Minor Allele Major Allele Patient Genotype MAF (1000 Genomes) OR Reference\nAZGP1 (AZGP1P1 pseudogene) rs4727443 7 99593346 intergenic A C C/A 0.411 1.3A 1.11B [13]\nMAPT rs1981997 17 44056767 intronic A G A/G 0.117 0.71A 0.67B [13]\nMUC5B rs35705950 11 1241221 promoter T G T/G 0.052 2.4–6.8 [10]–[14], [16]\nOBFC1 rs11191865 10 105672842 intronic G A A/G 0.584 0.8A 0.87B [13]\nTOLLIP rs5743890 11 1325829 Intronic C T C/T 0.0702 0.61 [10]\nSPPL2C rs17690703 17 43925297 Intronic T C C/T 0.1543 0.7 [10]\nA Discovery and Breplicate GWAS."}