PMC:3839092 / 5759-13541
Annnotations
2_test
{"project":"2_test","denotations":[{"id":"24324445-23702452-41737764","span":{"begin":185,"end":186},"obj":"23702452"},{"id":"24324445-9204677-41737765","span":{"begin":2833,"end":2835},"obj":"9204677"},{"id":"24324445-9256522-41737766","span":{"begin":3026,"end":3028},"obj":"9256522"},{"id":"24324445-469082-41737767","span":{"begin":3135,"end":3137},"obj":"469082"},{"id":"24324445-9100431-41737768","span":{"begin":3200,"end":3202},"obj":"9100431"},{"id":"24324445-23702452-41737769","span":{"begin":3606,"end":3607},"obj":"23702452"},{"id":"24324445-21969419-41737770","span":{"begin":3609,"end":3610},"obj":"21969419"},{"id":"24324445-21786117-41737771","span":{"begin":3612,"end":3614},"obj":"21786117"},{"id":"24324445-16624579-41737772","span":{"begin":5449,"end":5451},"obj":"16624579"}],"text":"Materials and Methods\n\nParticipants\nThe sample population partially overlapped with that used for our previously published resting state functional magnetic resonance imaging research (8), and was comprised of 17 adolescents with MDD (ages 13–20 years, M = 16.8, SD = 2.2, 8 female) and 16 HC (ages 13–19 years, M = 16.4, SD = 1.4, 10 female) group matched for age, and all were right-handed. Depressed adolescents were recruited through the New York University (NYU) Child Study Center, the Bellevue Hospital Center Department of Psychiatry, and local advertisements in the NY metropolitan area. HC were recruited from the greater NY metropolitan area through local advertisements and from the families of NYU staff. The study was approved by the NYU School of Medicine and the Icahn School of Medicine at Mount Sinai institutional review boards. Prior to enrollment, study procedures were explained to the subjects and parents. Written informed consent was provided by participants age 18 and older; those under age 18 provided signed assent and a parent/guardian provided signed informed consent.\n\nInclusion and exclusion criteria\nAll subjects were ≤20 years old and did not present with any significant medical or neurological disorders. Other exclusionary criteria consisted of an IQ \u003c 80, MRI contraindications as assessed by a standard screening form, a positive urine toxicology test or a positive urine pregnancy test in females.\nAll MDD subjects met the DSM-IV-TR diagnosis of MDD with a current episode ≥8 weeks duration, and raw severity score ≥40 (i.e., T score ≥ 63) during the initial evaluation on the Children’s Depression Rating Scale-Revised (CDRS-R), and were psychotropic medication-free for at least 7 half-lives of the medication. To explore a wider range of depression severity we included patients presenting with mild to severe depression on the date of the scan. Exclusionary criteria for the MDD group included current or past DSM-IV-TR diagnoses of bipolar disorder, schizophrenia, pervasive developmental disorder, panic disorder, obsessive-compulsive disorder, conduct disorder, Tourette’s disorder, or a substance-related disorder in the past 12 months. Current diagnoses of post-traumatic stress disorder or an eating disorder were also exclusionary. In addition, acute suicidality requiring immediate inpatient admission was exclusionary. HC subjects did not meet the criteria for any major current or past DSM-IV-TR diagnoses and had never received psychotropic medication.\n\nClinical assessments\nAll subjects were assessed by a board-certified child and adolescent psychiatrist or a clinical psychologist at the NYU Child Study Center. Clinical diagnoses were established using the Schedule for Affective Disorders and Schizophrenia for School-Age Children-Present and Lifetime Version [KSADS-PL; (21)], a semi-structured interview performed with both the subjects and their parents. Depression severity was assessed by the CDRS-R and the Beck Depression Inventory, second edition [BDI-II; (22)]. Additionally, suicidality and anxiety were assessed using the Beck Scale for Suicidal Ideation [BSSI; (23)] and the Multidimensional Anxiety Scale for Children [MASC; (24)], respectively. The Kaufman Brief Intelligence Test (25) or the Wechsler Abbreviated Scale of Intelligence (26) were used to estimate IQ. Urine toxicology and pregnancy tests were administered on the day of the scan.\n\nAnhedonia\nOur approach to quantifying anhedonia allows for clinician- and self-rated assessments to contribute equally to the anhedonia score (range 1–13). As in our previous studies (8, 9, 27), the score for each subject was computed by summing the responses to three items associated with anhedonia from the clinician-rated CDRS-R (item 2: “difficulty having fun;” scale of 1–7) and the self-rated BDI-II (items 4: “loss of pleasure” and 12: “loss of interest;” scales of 0–3).\n\nIrritability\nOur approach again combined both clinician- and self-rated assessments to contribute to the irritability score (range 1–10). The score for each subject was computed by summing the responses to the items associated with irritability from the CDRS-R (item 8: “irritability;” scale of 1–7) and the BDI-II (item 17: “irritability;” scale of 0–3).\n\nData acquisition and analysis\nDiffusion data were acquired on a Siemens Allegra 3.0 T scanner at the NYU Center for Brain Imaging using a single-channel head coil. Diffusion-weighted echo-planar images (EPI) were acquired along 12 diffusion gradient directions for acquisition of 35 slices through the whole brain (TR = 6000 ms, TE = 82 ms, flip angle = 90°, b value = 1000 s/mm2, FOV = 192 mm, 128 × 128 matrix, slice thickness = 2.5 mm, with four averages). High-resolution T1-weighted anatomical images were acquired using a magnetization-prepared gradient echo sequence (TR = 2530 ms; TE = 3.25 ms; TI = 1100 ms; flip angle = 7°; 128 slices; FOV = 256 mm; acquisition voxel size = 1.3 mm × 1 mm × 1.3 mm).\nAll preprocessing was performed using FMRIB’s Software Library (FSL; Oxford, UK): FMRIB’s Diffusion Toolbox (FDT). Preprocessing began with eddy current correction to correct for gradient-coil distortions and small head motions, using affine registration to a b0 reference volume. A diffusion tensor model was fitted to each voxel along the principal λ1, λ2, λ3 directions to generate FA, MD, RD, and AD. We then implemented FSL’s tract-based spatial statistics pipeline [TBSS; (28)], in which a non-linear registration aligned each subject to the FMRIB58_FA template in 1 mm × 1 mm × 1 mm standard space, and then warped each subject into standard Montreal Neurological Institute space (MNI152). A WM “skeleton” was then generated representing a single line running down the centers of all of the common WM fibers by using an FA cut-off of 0.2, and relevant diffusivity measures (i.e., FA, MD, RD, AD) were projected onto the skeleton. Group statistical analysis was then conducted only on voxels within the WM skeleton mask, therefore restricting the voxel-wise analysis only to voxels with high confidence of lying within equivalent major WM pathways in each individual.\nIn order to assess differences in FA, MD, RD, and AD between the MDD and HC groups, we used FSL’s Randomise with 5000 permutations to perform voxel-wise independent samples t-tests using voxel-based thresholding while controlling for age and sex. Group comparisons did not withstand stringent correction for multiple comparisons using family-wise error correction (FWE; implemented by Randomise) or FDR correction (implemented by FSL’s FDR program). As such, we performed a second, more exploratory analysis in which we accepted clusters of at least 10 contiguous voxels at p \u003c 0.001.\nTo investigate relationships with depression severity, anhedonia, and irritability, Randomise was again used to perform a series of one-sample t-tests using the score for each category, respectively, while controlling for age and gender. Due to the low variability in scores in the HC group, as well as the nature of the study topic, the analysis was limited to the MDD group whose scores were normally distributed. Once again, tests did not withstand correction for multiple comparisons and we used the more exploratory approach of accepting clusters of at least 10 contiguous voxels at p \u003c 0.001. We used FSL’s cluster program to extract all clusters across the brain, and anatomical localization of each cluster was determined using the FSLView atlas toolbox and the relevant gray matter (Harvard-Oxford Cortical/Subcortical) and WM (Johns Hopkins University WM tractography) atlases. Brain imaging results were prepared for display using FSL’s tbss_fill script, which displays results superimposed upon the WM skeleton from the group TBSS analysis.\n"}
NEUROSES
{"project":"NEUROSES","denotations":[{"id":"T196","span":{"begin":137,"end":147},"obj":"PATO_0001510"},{"id":"T197","span":{"begin":148,"end":156},"obj":"PATO_0001685"},{"id":"T198","span":{"begin":230,"end":233},"obj":"CHEBI_566274"},{"id":"T199","span":{"begin":1443,"end":1446},"obj":"CHEBI_566274"},{"id":"T200","span":{"begin":1487,"end":1490},"obj":"CHEBI_566274"},{"id":"T201","span":{"begin":1920,"end":1923},"obj":"CHEBI_566274"},{"id":"T202","span":{"begin":235,"end":239},"obj":"CHEBI_84123"},{"id":"T203","span":{"begin":294,"end":298},"obj":"CHEBI_84123"},{"id":"T204","span":{"begin":361,"end":364},"obj":"CHEBI_84123"},{"id":"T205","span":{"begin":984,"end":987},"obj":"CHEBI_84123"},{"id":"T206","span":{"begin":1014,"end":1017},"obj":"CHEBI_84123"},{"id":"T207","span":{"begin":275,"end":281},"obj":"PATO_0000383"},{"id":"T208","span":{"begin":335,"end":341},"obj":"PATO_0000383"},{"id":"T209","span":{"begin":343,"end":348},"obj":"CHEBI_24433"},{"id":"T210","span":{"begin":1924,"end":1929},"obj":"CHEBI_24433"},{"id":"T211","span":{"begin":361,"end":364},"obj":"PATO_0000011"},{"id":"T212","span":{"begin":984,"end":987},"obj":"PATO_0000011"},{"id":"T213","span":{"begin":1014,"end":1017},"obj":"PATO_0000011"},{"id":"T214","span":{"begin":379,"end":384},"obj":"PATO_0000367"},{"id":"T215","span":{"begin":591,"end":595},"obj":"PATO_0001323"},{"id":"T216","span":{"begin":648,"end":652},"obj":"PATO_0001323"},{"id":"T217","span":{"begin":762,"end":770},"obj":"CHEBI_23888"},{"id":"T218","span":{"begin":795,"end":803},"obj":"CHEBI_23888"},{"id":"T219","span":{"begin":1170,"end":1173},"obj":"CHEBI_52027"},{"id":"T220","span":{"begin":2385,"end":2388},"obj":"CHEBI_52027"},{"id":"T221","span":{"begin":1178,"end":1185},"obj":"PATO_0000467"},{"id":"T222","span":{"begin":1456,"end":1459},"obj":"CHEBI_16643"},{"id":"T223","span":{"begin":1456,"end":1459},"obj":"CHEBI_16811"},{"id":"T224","span":{"begin":1456,"end":1459},"obj":"CHEBI_16044"},{"id":"T225","span":{"begin":1464,"end":1467},"obj":"CHEBI_38624"},{"id":"T226","span":{"begin":1955,"end":1958},"obj":"CHEBI_38624"},{"id":"T227","span":{"begin":2441,"end":2444},"obj":"CHEBI_38624"},{"id":"T228","span":{"begin":1523,"end":1531},"obj":"PATO_0001309"},{"id":"T229","span":{"begin":1704,"end":1708},"obj":"PATO_0002316"},{"id":"T230","span":{"begin":2297,"end":2302},"obj":"PATO_0000389"},{"id":"T231","span":{"begin":1629,"end":1639},"obj":"PM3425"},{"id":"T232","span":{"begin":1782,"end":1792},"obj":"PM3425"},{"id":"T233","span":{"begin":1854,"end":1864},"obj":"PM3425"},{"id":"T234","span":{"begin":1847,"end":1864},"obj":"PM8322"},{"id":"T235","span":{"begin":1629,"end":1639},"obj":"PM3425"},{"id":"T236","span":{"begin":1782,"end":1792},"obj":"PM3425"},{"id":"T237","span":{"begin":1854,"end":1864},"obj":"PM3425"},{"id":"T248","span":{"begin":2589,"end":2599},"obj":"PATO_0001189"},{"id":"T249","span":{"begin":2779,"end":2782},"obj":"PATO_0000011"},{"id":"T250","span":{"begin":2779,"end":2782},"obj":"CHEBI_84123"},{"id":"T251","span":{"begin":2792,"end":2799},"obj":"PATO_0000467"},{"id":"T252","span":{"begin":2846,"end":2856},"obj":"PATO_0001411"},{"id":"T253","span":{"begin":3017,"end":3020},"obj":"CHEBI_53651"},{"id":"T254","span":{"begin":3822,"end":3825},"obj":"CHEBI_53651"},{"id":"T255","span":{"begin":4211,"end":4214},"obj":"CHEBI_53651"},{"id":"T256","span":{"begin":2919,"end":2929},"obj":"PM3425"},{"id":"T257","span":{"begin":2979,"end":2989},"obj":"PM3425"},{"id":"T258","span":{"begin":2919,"end":2929},"obj":"PM3425"},{"id":"T259","span":{"begin":2979,"end":2989},"obj":"PM3425"},{"id":"T291","span":{"begin":4720,"end":4724},"obj":"PATO_0000469"},{"id":"T292","span":{"begin":6063,"end":6067},"obj":"PATO_0000469"},{"id":"T293","span":{"begin":5179,"end":5184},"obj":"PATO_0000587"},{"id":"T294","span":{"begin":5243,"end":5249},"obj":"PATO_0000918"},{"id":"T295","span":{"begin":5470,"end":5476},"obj":"PATO_0001199"},{"id":"T296","span":{"begin":5800,"end":5803},"obj":"PATO_0001978"},{"id":"T297","span":{"begin":5907,"end":5912},"obj":"CHEBI_24433"},{"id":"T298","span":{"begin":6391,"end":6396},"obj":"CHEBI_24433"},{"id":"T299","span":{"begin":7014,"end":7019},"obj":"CHEBI_24433"},{"id":"T300","span":{"begin":7099,"end":7104},"obj":"CHEBI_24433"},{"id":"T301","span":{"begin":7761,"end":7766},"obj":"CHEBI_24433"},{"id":"T302","span":{"begin":6209,"end":6212},"obj":"CHEBI_566274"},{"id":"T303","span":{"begin":7095,"end":7098},"obj":"CHEBI_566274"},{"id":"T304","span":{"begin":6378,"end":6381},"obj":"PATO_0000011"},{"id":"T305","span":{"begin":6951,"end":6954},"obj":"PATO_0000011"},{"id":"T306","span":{"begin":6378,"end":6381},"obj":"CHEBI_84123"},{"id":"T307","span":{"begin":6951,"end":6954},"obj":"CHEBI_84123"},{"id":"T308","span":{"begin":6409,"end":6412},"obj":"CHEBI_52027"},{"id":"T309","span":{"begin":7163,"end":7166},"obj":"CHEBI_52027"},{"id":"T310","span":{"begin":6452,"end":6460},"obj":"PATO_0002118"},{"id":"T311","span":{"begin":7196,"end":7204},"obj":"PATO_000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and Methods\n\nParticipants\nThe sample population partially overlapped with that used for our previously published resting state functional magnetic resonance imaging research (8), and was comprised of 17 adolescents with MDD (ages 13–20 years, M = 16.8, SD = 2.2, 8 female) and 16 HC (ages 13–19 years, M = 16.4, SD = 1.4, 10 female) group matched for age, and all were right-handed. Depressed adolescents were recruited through the New York University (NYU) Child Study Center, the Bellevue Hospital Center Department of Psychiatry, and local advertisements in the NY metropolitan area. HC were recruited from the greater NY metropolitan area through local advertisements and from the families of NYU staff. The study was approved by the NYU School of Medicine and the Icahn School of Medicine at Mount Sinai institutional review boards. Prior to enrollment, study procedures were explained to the subjects and parents. Written informed consent was provided by participants age 18 and older; those under age 18 provided signed assent and a parent/guardian provided signed informed consent.\n\nInclusion and exclusion criteria\nAll subjects were ≤20 years old and did not present with any significant medical or neurological disorders. Other exclusionary criteria consisted of an IQ \u003c 80, MRI contraindications as assessed by a standard screening form, a positive urine toxicology test or a positive urine pregnancy test in females.\nAll MDD subjects met the DSM-IV-TR diagnosis of MDD with a current episode ≥8 weeks duration, and raw severity score ≥40 (i.e., T score ≥ 63) during the initial evaluation on the Children’s Depression Rating Scale-Revised (CDRS-R), and were psychotropic medication-free for at least 7 half-lives of the medication. To explore a wider range of depression severity we included patients presenting with mild to severe depression on the date of the scan. Exclusionary criteria for the MDD group included current or past DSM-IV-TR diagnoses of bipolar disorder, schizophrenia, pervasive developmental disorder, panic disorder, obsessive-compulsive disorder, conduct disorder, Tourette’s disorder, or a substance-related disorder in the past 12 months. Current diagnoses of post-traumatic stress disorder or an eating disorder were also exclusionary. In addition, acute suicidality requiring immediate inpatient admission was exclusionary. HC subjects did not meet the criteria for any major current or past DSM-IV-TR diagnoses and had never received psychotropic medication.\n\nClinical assessments\nAll subjects were assessed by a board-certified child and adolescent psychiatrist or a clinical psychologist at the NYU Child Study Center. Clinical diagnoses were established using the Schedule for Affective Disorders and Schizophrenia for School-Age Children-Present and Lifetime Version [KSADS-PL; (21)], a semi-structured interview performed with both the subjects and their parents. Depression severity was assessed by the CDRS-R and the Beck Depression Inventory, second edition [BDI-II; (22)]. Additionally, suicidality and anxiety were assessed using the Beck Scale for Suicidal Ideation [BSSI; (23)] and the Multidimensional Anxiety Scale for Children [MASC; (24)], respectively. The Kaufman Brief Intelligence Test (25) or the Wechsler Abbreviated Scale of Intelligence (26) were used to estimate IQ. Urine toxicology and pregnancy tests were administered on the day of the scan.\n\nAnhedonia\nOur approach to quantifying anhedonia allows for clinician- and self-rated assessments to contribute equally to the anhedonia score (range 1–13). As in our previous studies (8, 9, 27), the score for each subject was computed by summing the responses to three items associated with anhedonia from the clinician-rated CDRS-R (item 2: “difficulty having fun;” scale of 1–7) and the self-rated BDI-II (items 4: “loss of pleasure” and 12: “loss of interest;” scales of 0–3).\n\nIrritability\nOur approach again combined both clinician- and self-rated assessments to contribute to the irritability score (range 1–10). The score for each subject was computed by summing the responses to the items associated with irritability from the CDRS-R (item 8: “irritability;” scale of 1–7) and the BDI-II (item 17: “irritability;” scale of 0–3).\n\nData acquisition and analysis\nDiffusion data were acquired on a Siemens Allegra 3.0 T scanner at the NYU Center for Brain Imaging using a single-channel head coil. Diffusion-weighted echo-planar images (EPI) were acquired along 12 diffusion gradient directions for acquisition of 35 slices through the whole brain (TR = 6000 ms, TE = 82 ms, flip angle = 90°, b value = 1000 s/mm2, FOV = 192 mm, 128 × 128 matrix, slice thickness = 2.5 mm, with four averages). High-resolution T1-weighted anatomical images were acquired using a magnetization-prepared gradient echo sequence (TR = 2530 ms; TE = 3.25 ms; TI = 1100 ms; flip angle = 7°; 128 slices; FOV = 256 mm; acquisition voxel size = 1.3 mm × 1 mm × 1.3 mm).\nAll preprocessing was performed using FMRIB’s Software Library (FSL; Oxford, UK): FMRIB’s Diffusion Toolbox (FDT). Preprocessing began with eddy current correction to correct for gradient-coil distortions and small head motions, using affine registration to a b0 reference volume. A diffusion tensor model was fitted to each voxel along the principal λ1, λ2, λ3 directions to generate FA, MD, RD, and AD. We then implemented FSL’s tract-based spatial statistics pipeline [TBSS; (28)], in which a non-linear registration aligned each subject to the FMRIB58_FA template in 1 mm × 1 mm × 1 mm standard space, and then warped each subject into standard Montreal Neurological Institute space (MNI152). A WM “skeleton” was then generated representing a single line running down the centers of all of the common WM fibers by using an FA cut-off of 0.2, and relevant diffusivity measures (i.e., FA, MD, RD, AD) were projected onto the skeleton. Group statistical analysis was then conducted only on voxels within the WM skeleton mask, therefore restricting the voxel-wise analysis only to voxels with high confidence of lying within equivalent major WM pathways in each individual.\nIn order to assess differences in FA, MD, RD, and AD between the MDD and HC groups, we used FSL’s Randomise with 5000 permutations to perform voxel-wise independent samples t-tests using voxel-based thresholding while controlling for age and sex. Group comparisons did not withstand stringent correction for multiple comparisons using family-wise error correction (FWE; implemented by Randomise) or FDR correction (implemented by FSL’s FDR program). As such, we performed a second, more exploratory analysis in which we accepted clusters of at least 10 contiguous voxels at p \u003c 0.001.\nTo investigate relationships with depression severity, anhedonia, and irritability, Randomise was again used to perform a series of one-sample t-tests using the score for each category, respectively, while controlling for age and gender. Due to the low variability in scores in the HC group, as well as the nature of the study topic, the analysis was limited to the MDD group whose scores were normally distributed. Once again, tests did not withstand correction for multiple comparisons and we used the more exploratory approach of accepting clusters of at least 10 contiguous voxels at p \u003c 0.001. We used FSL’s cluster program to extract all clusters across the brain, and anatomical localization of each cluster was determined using the FSLView atlas toolbox and the relevant gray matter (Harvard-Oxford Cortical/Subcortical) and WM (Johns Hopkins University WM tractography) atlases. Brain imaging results were prepared for display using FSL’s tbss_fill script, which displays results superimposed upon the WM skeleton from the group TBSS analysis.\n"}