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PMC:3589482 / 8734-8899 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4623 164-165 : denotes -
T4622 159-164 SYM denotes C/EBP
T4621 157-158 : denotes :
T4620 150-157 VBP denotes include
T4619 143-149 NNS denotes assays
T4618 138-142 NN denotes blot
T4617 130-137 JJ denotes western
T4616 126-129 IN denotes for
T4615 121-125 VBN denotes used
T4614 110-120 NNS denotes antibodies
T4613 104-109 JJ denotes Other
T4612 102-103 . denotes .
T4611 101-102 NNP denotes ]
T4610 99-101 CD denotes 35
T4609 98-99 NNP denotes [
T4608 95-97 IN denotes in
T4607 92-94 IN denotes as
T4606 87-91 NNS denotes coli
T4605 84-86 NNP denotes E.
T4604 81-83 IN denotes in
T4603 72-80 VBN denotes produced
T4602 64-71 NN denotes protein
T4601 57-63 NN denotes fusion
T4600 48-56 NNP denotes SerpinB2
T4599 37-47 NNP denotes GST-murine
T4598 25-36 JJ denotes recombinant
T4597 16-24 JJ denotes purified
T4596 14-15 DT denotes a
T4595 9-13 IN denotes with
R3386 T4596 T4602 det a,protein
R3387 T4597 T4602 amod purified,protein
R3388 T4598 T4602 amod recombinant,protein
R3389 T4599 T4600 compound GST-murine,SerpinB2
R3390 T4600 T4602 compound SerpinB2,protein
R3391 T4601 T4602 compound fusion,protein
R3392 T4602 T4595 pobj protein,with
R3393 T4603 T4602 acl produced,protein
R3394 T4604 T4603 prep in,produced
R3395 T4605 T4606 compound E.,coli
R3396 T4606 T4604 pobj coli,in
R3397 T4607 T4603 prep as,produced
R3398 T4608 T4607 prep in,as
R3399 T4609 T4611 nmod [,]
R3400 T4610 T4611 nummod 35,]
R3401 T4611 T4608 pobj ],in
R3403 T4613 T4614 amod Other,antibodies
R3404 T4614 T4620 nsubj antibodies,include
R3405 T4615 T4614 acl used,antibodies
R3406 T4616 T4615 prep for,used
R3407 T4617 T4619 amod western,assays
R3408 T4618 T4619 compound blot,assays
R3409 T4619 T4616 pobj assays,for
R3410 T4620 T4620 ROOT include,include
R3411 T4621 T4620 punct :,include

2_test

Id Subject Object Predicate Lexical cue
23472114-9892694-87899173 99-101 9892694 denotes 35
T16742 99-101 9892694 denotes 35

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4410 157-158 -COLON- denotes :
T4409 150-157 VB denotes include
T4408 143-149 NN denotes assays
T4407 138-142 NN denotes blot
T4406 130-137 JJ denotes western
T4405 126-129 IN denotes for
T4404 121-125 VB denotes used
T4403 110-120 NN denotes antibodies
T4402 104-109 JJ denotes Other
T4401 101-102 -RRB- denotes ]
T4400 99-101 CD denotes 35
T4399 98-99 -LRB- denotes [
T4398 95-97 IN denotes in
T4397 92-94 IN denotes as
T4396 87-91 FW denotes coli
T4395 84-86 FW denotes E.
T4394 81-83 IN denotes in
T4393 72-80 VB denotes produced
T4392 64-71 NN denotes protein
T4391 57-63 NN denotes fusion
T4390 48-56 NN denotes SerpinB2
T4389 37-47 NN denotes GST-murine
T4388 25-36 JJ denotes recombinant
T4387 16-24 VB denotes purified
T4386 14-15 DT denotes a
T4385 9-13 IN denotes with
R3232 T4392 T4385 arg2Of protein,with
R3233 T4392 T4386 arg1Of protein,a
R3234 T4392 T4387 arg2Of protein,purified
R3235 T4392 T4388 arg1Of protein,recombinant
R3236 T4392 T4389 arg1Of protein,GST-murine
R3237 T4392 T4390 arg1Of protein,SerpinB2
R3238 T4392 T4391 arg1Of protein,fusion
R3239 T4392 T4393 arg2Of protein,produced
R3240 T4393 T4394 arg1Of produced,in
R3241 T4393 T4398 arg1Of produced,in
R3242 T4393 T4399 arg1Of produced,[
R3243 T4396 T4394 arg2Of coli,in
R3244 T4396 T4395 arg1Of coli,E.
R3245 T4398 T4397 arg1Of in,as
R3246 T4400 T4399 arg2Of 35,[
R3247 T4401 T4399 arg3Of ],[
R3248 T4403 T4402 arg1Of antibodies,Other
R3249 T4403 T4404 arg2Of antibodies,used
R3250 T4403 T4409 arg1Of antibodies,include
R3251 T4404 T4405 arg1Of used,for
R3252 T4408 T4405 arg2Of assays,for
R3253 T4408 T4406 arg1Of assays,western
R3254 T4408 T4407 arg1Of assays,blot
R3255 T4409 T4410 arg1Of include,:

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4270 37-71 Protein denotes GST-murine SerpinB2 fusion protein

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4442 48-56 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-MF

Id Subject Object Predicate Lexical cue
T4276 110-120 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T4285 110-120 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T4282 110-120 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies

simple1

Id Subject Object Predicate Lexical cue
T4290 37-71 Protein denotes GST-murine SerpinB2 fusion protein

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4440 72-80 Gene_expression denotes produced
T4436 37-71 Protein denotes GST-murine SerpinB2 fusion protein
R3281 T4436 T4440 themeOf GST-murine SerpinB2 fusion protein,produced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4460 72-80 Gene_expression denotes produced
T4456 37-71 Protein denotes GST-murine SerpinB2 fusion protein
R3285 T4456 T4460 themeOf GST-murine SerpinB2 fusion protein,produced

DLUT931

Id Subject Object Predicate Lexical cue
T4455 72-80 Gene_expression denotes produced
T4451 37-71 Protein denotes GST-murine SerpinB2 fusion protein
R3284 T4451 T4455 themeOf GST-murine SerpinB2 fusion protein,produced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4500 14-91 Gene_expression denotes a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli
T4489 130-149 Entity denotes western blot assays
T4484 14-91 Protein denotes a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli
T4477 104-149 Entity denotes Other antibodies used for western blot assays
R3290 T4484 T4500 themeOf a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli,a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T4464 72-80 Gene_expression denotes produced
T4463 72-80 Gene_expression denotes produced
T4462 41-71 Protein denotes murine SerpinB2 fusion protein
T4461 37-40 Protein denotes GST
R3286 T4461 T4463 themeOf GST,produced
R3287 T4462 T4464 themeOf murine SerpinB2 fusion protein,produced

testone

Id Subject Object Predicate Lexical cue
T4247 37-71 Protein denotes GST-murine SerpinB2 fusion protein

test3

Id Subject Object Predicate Lexical cue
T4255 37-71 Protein denotes GST-murine SerpinB2 fusion protein
T4251 37-71 Protein denotes GST-murine SerpinB2 fusion protein