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PMC:3589482 / 8287-9039 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4651 751-752 . denotes .
T4650 750-751 -RRB- denotes )
T4649 746-750 NNP denotes Inc.
T4648 744-745 , denotes ,
T4647 734-744 NNP denotes Technology
T4646 724-733 NNP denotes Signaling
T4645 719-723 NNP denotes Cell
T4644 718-719 -LRB- denotes (
T4643 710-717 NN denotes tubulin
T4551 197-198 -RRB- denotes )
T4550 187-197 NNP denotes Invitrogen
T4549 186-187 -LRB- denotes (
T4548 181-185 NNS denotes gels
T4547 174-180 NNP denotes NuPAGE
T4546 165-173 NNP denotes Bis-Tris
T4545 163-164 NN denotes %
T4544 161-163 CD denotes 12
T4543 159-160 CD denotes 4
T4542 156-158 IN denotes on
T4541 146-155 VBN denotes separated
T4540 141-145 VBD denotes were
T4539 132-140 NNS denotes proteins
T4538 130-131 , denotes ,
T4537 129-130 -RRB- denotes )
T4536 126-129 NNP denotes SDS
T4535 124-125 NN denotes %
T4534 121-124 CD denotes 0.1
T4533 119-120 , denotes ,
T4532 107-119 NN denotes deoxycholate
T4531 105-106 NN denotes %
T4530 102-105 CD denotes 0.5
T4529 100-101 , denotes ,
T4528 95-100 NN denotes NP-40
T4527 93-94 NN denotes %
T4526 90-93 CD denotes 0.5
T4525 88-89 , denotes ,
T4524 83-88 NNP denotes X-100
T4523 76-82 NNP denotes Triton
T4522 75-76 NN denotes %
T4521 74-75 CD denotes 1
T4520 72-73 , denotes ,
T4519 68-72 NNP denotes NaCl
T4518 65-67 NNP denotes mM
T4517 61-64 CD denotes 150
T4516 59-60 , denotes ,
T4515 55-59 NNP denotes Tris
T4514 52-54 NNP denotes mM
T4513 49-51 CD denotes 10
T4512 48-49 -LRB- denotes (
T4511 41-47 NN denotes buffer
T4510 36-40 NNP denotes RIPA
T4509 33-35 IN denotes in
T4508 24-32 VBN denotes prepared
T4642 708-709 FW denotes β
T4641 707-708 FW denotes /
T4640 706-707 VB denotes α
T4639 702-705 CC denotes and
T4638 700-701 -RRB- denotes )
T4637 695-700 NNP denotes GAPDH
T4636 694-695 -LRB- denotes (
T4635 680-693 NN denotes dehydrogenase
T4634 653-679 JJ denotes glyceraldehyde-3-phosphate
T4633 651-652 , denotes ,
T4632 650-651 -RRB- denotes )
T4631 635-650 NNPS denotes Biotechnologies
T4630 630-634 NNP denotes Cruz
T4629 624-629 NNP denotes Santa
T4628 623-624 -LRB- denotes (
T4627 621-622 -RRB- denotes )
T4626 615-621 JJ denotes sc-150
T4625 614-615 -LRB- denotes (
T4624 612-613 NN denotes β
T4623 611-612 : denotes -
T4622 606-611 SYM denotes C/EBP
T4621 604-605 : denotes :
T4620 597-604 VBP denotes include
T4619 590-596 NNS denotes assays
T4618 585-589 NN denotes blot
T4617 577-584 JJ denotes western
T4616 573-576 IN denotes for
T4615 568-572 VBN denotes used
T4614 557-567 NNS denotes antibodies
T4613 551-556 JJ denotes Other
T4612 549-550 . denotes .
T4611 548-549 NNP denotes ]
T4610 546-548 CD denotes 35
T4609 545-546 NNP denotes [
T4608 542-544 IN denotes in
T4607 539-541 IN denotes as
T4606 534-538 NNS denotes coli
T4605 531-533 NNP denotes E.
T4604 528-530 IN denotes in
T4603 519-527 VBN denotes produced
T4602 511-518 NN denotes protein
T4601 504-510 NN denotes fusion
T4600 495-503 NNP denotes SerpinB2
T4599 484-494 NNP denotes GST-murine
T4598 472-483 JJ denotes recombinant
T4597 463-471 JJ denotes purified
T4596 461-462 DT denotes a
T4595 456-460 IN denotes with
T4594 443-455 NN denotes immunization
T4593 437-442 IN denotes after
T4592 428-436 VBN denotes prepared
T4591 423-427 VBD denotes were
T4590 412-422 NNS denotes antibodies
T4589 403-411 NNP denotes SerpinB2
T4588 392-402 JJ denotes anti-mouse
T4587 385-391 NN denotes rabbit
T4586 376-384 VBD denotes purified
T4585 367-375 NNP denotes Affinity
T4584 365-366 . denotes .
T4583 356-365 JJ denotes overnight
T4582 345-355 NNS denotes antibodies
T4581 337-344 JJ denotes primary
T4580 332-336 IN denotes with
T4579 322-331 VBN denotes incubated
T4578 318-321 CC denotes and
T4577 316-317 , denotes ,
T4576 315-316 -RRB- denotes )
T4575 307-315 NN denotes Tween-20
T4574 305-306 NN denotes %
T4573 302-305 CD denotes 0.1
T4572 300-301 , denotes ,
T4571 297-300 NNP denotes PBS
T4570 294-296 NNP denotes 1X
T4569 293-294 -LRB- denotes (
T4568 287-292 NNP denotes PBS-T
T4567 284-286 IN denotes in
T4566 279-283 NN denotes milk
T4565 277-278 NN denotes %
T4564 276-277 CD denotes 5
T4563 271-275 IN denotes with
T4562 263-270 VBN denotes blocked
T4561 250-262 RB denotes subsequently
T4560 245-249 VBD denotes were
T4559 235-244 NNS denotes Membranes
T4558 233-234 . denotes .
T4557 224-233 NNS denotes membranes
T4556 219-223 NNP denotes PVDF
T4555 216-218 TO denotes to
T4554 204-215 VBD denotes transferred
T4553 200-203 CC denotes and
T4552 198-199 , denotes ,
T4507 19-23 VBD denotes were
T4506 11-18 NNS denotes lysates
T4505 6-10 NN denotes cell
T4504 0-5 NNP denotes Whole
R3322 T4532 T4528 appos deoxycholate,NP-40
R3323 T4533 T4532 punct ",",deoxycholate
R3324 T4534 T4535 nummod 0.1,%
R3325 T4535 T4536 compound %,SDS
R3326 T4536 T4532 appos SDS,deoxycholate
R3327 T4537 T4536 punct ),SDS
R3328 T4538 T4541 punct ",",separated
R3329 T4539 T4541 nsubjpass proteins,separated
R3330 T4540 T4541 auxpass were,separated
R3331 T4541 T4541 ROOT separated,separated
R3332 T4542 T4541 prep on,separated
R3333 T4543 T4542 pobj 4,on
R3334 T4544 T4545 nummod 12,%
R3335 T4545 T4548 compound %,gels
R3336 T4546 T4547 compound Bis-Tris,NuPAGE
R3337 T4547 T4548 compound NuPAGE,gels
R3338 T4548 T4541 appos gels,separated
R3339 T4549 T4550 punct (,Invitrogen
R3340 T4550 T4548 appos Invitrogen,gels
R3341 T4551 T4548 punct ),gels
R3342 T4552 T4541 punct ",",separated
R3343 T4553 T4541 cc and,separated
R3344 T4554 T4541 conj transferred,separated
R3345 T4555 T4554 prep to,transferred
R3346 T4556 T4557 compound PVDF,membranes
R3347 T4557 T4555 pobj membranes,to
R3348 T4558 T4541 punct .,separated
R3349 T4559 T4562 nsubjpass Membranes,blocked
R3350 T4560 T4562 auxpass were,blocked
R3351 T4561 T4562 advmod subsequently,blocked
R3352 T4562 T4562 ROOT blocked,blocked
R3353 T4563 T4562 prep with,blocked
R3354 T4564 T4565 nummod 5,%
R3355 T4565 T4566 compound %,milk
R3356 T4566 T4563 pobj milk,with
R3357 T4567 T4566 prep in,milk
R3358 T4568 T4567 pobj PBS-T,in
R3359 T4569 T4568 punct (,PBS-T
R3360 T4570 T4571 compound 1X,PBS
R3361 T4571 T4568 appos PBS,PBS-T
R3362 T4572 T4568 punct ",",PBS-T
R3363 T4573 T4574 nummod 0.1,%
R3364 T4574 T4575 compound %,Tween-20
R3365 T4575 T4568 appos Tween-20,PBS-T
R3366 T4576 T4568 punct ),PBS-T
R3367 T4577 T4562 punct ",",blocked
R3368 T4578 T4562 cc and,blocked
R3369 T4579 T4562 conj incubated,blocked
R3370 T4580 T4579 prep with,incubated
R3371 T4581 T4582 amod primary,antibodies
R3372 T4582 T4580 pobj antibodies,with
R3373 T4583 T4579 advmod overnight,incubated
R3374 T4584 T4562 punct .,blocked
R3375 T4585 T4586 nsubj Affinity,purified
R3376 T4586 T4586 ROOT purified,purified
R3377 T4587 T4590 compound rabbit,antibodies
R3378 T4588 T4589 compound anti-mouse,SerpinB2
R3379 T4589 T4590 compound SerpinB2,antibodies
R3380 T4590 T4592 nsubjpass antibodies,prepared
R3381 T4591 T4592 auxpass were,prepared
R3382 T4592 T4586 ccomp prepared,purified
R3383 T4593 T4592 prep after,prepared
R3384 T4594 T4593 pobj immunization,after
R3385 T4595 T4594 prep with,immunization
R3386 T4596 T4602 det a,protein
R3387 T4597 T4602 amod purified,protein
R3388 T4598 T4602 amod recombinant,protein
R3389 T4599 T4600 compound GST-murine,SerpinB2
R3390 T4600 T4602 compound SerpinB2,protein
R3391 T4601 T4602 compound fusion,protein
R3392 T4602 T4595 pobj protein,with
R3393 T4603 T4602 acl produced,protein
R3394 T4604 T4603 prep in,produced
R3395 T4605 T4606 compound E.,coli
R3396 T4606 T4604 pobj coli,in
R3397 T4607 T4603 prep as,produced
R3398 T4608 T4607 prep in,as
R3399 T4609 T4611 nmod [,]
R3400 T4610 T4611 nummod 35,]
R3401 T4611 T4608 pobj ],in
R3402 T4612 T4586 punct .,purified
R3403 T4613 T4614 amod Other,antibodies
R3404 T4614 T4620 nsubj antibodies,include
R3405 T4615 T4614 acl used,antibodies
R3406 T4616 T4615 prep for,used
R3407 T4617 T4619 amod western,assays
R3408 T4618 T4619 compound blot,assays
R3409 T4619 T4616 pobj assays,for
R3410 T4620 T4620 ROOT include,include
R3411 T4621 T4620 punct :,include
R3412 T4622 T4624 punct C/EBP,β
R3413 T4623 T4624 punct -,β
R3414 T4624 T4620 dobj β,include
R3415 T4625 T4624 punct (,β
R3416 T4626 T4624 appos sc-150,β
R3417 T4627 T4624 punct ),β
R3418 T4628 T4631 punct (,Biotechnologies
R3419 T4629 T4631 compound Santa,Biotechnologies
R3420 T4630 T4631 compound Cruz,Biotechnologies
R3421 T4631 T4624 parataxis Biotechnologies,β
R3422 T4632 T4631 punct ),Biotechnologies
R3423 T4633 T4631 punct ",",Biotechnologies
R3424 T4634 T4635 amod glyceraldehyde-3-phosphate,dehydrogenase
R3425 T4635 T4631 appos dehydrogenase,Biotechnologies
R3426 T4636 T4637 punct (,GAPDH
R3427 T4637 T4635 appos GAPDH,dehydrogenase
R3428 T4638 T4637 punct ),GAPDH
R3429 T4639 T4635 cc and,dehydrogenase
R3430 T4640 T4643 amod α,tubulin
R3431 T4641 T4643 compound /,tubulin
R3432 T4642 T4643 compound β,tubulin
R3433 T4643 T4635 conj tubulin,dehydrogenase
R3434 T4644 T4649 punct (,Inc.
R3435 T4645 T4649 nmod Cell,Inc.
R3436 T4646 T4649 nmod Signaling,Inc.
R3437 T4647 T4646 pobj Technology,Signaling
R3438 T4648 T4649 punct ",",Inc.
R3439 T4649 T4643 parataxis Inc.,tubulin
R3440 T4650 T4649 punct ),Inc.
R3441 T4651 T4620 punct .,include
R3294 T4504 T4506 compound Whole,lysates
R3295 T4505 T4506 compound cell,lysates
R3296 T4506 T4508 nsubjpass lysates,prepared
R3297 T4507 T4508 auxpass were,prepared
R3298 T4508 T4541 ccomp prepared,separated
R3299 T4509 T4508 prep in,prepared
R3300 T4510 T4511 compound RIPA,buffer
R3301 T4511 T4509 pobj buffer,in
R3302 T4512 T4515 punct (,Tris
R3303 T4513 T4515 nummod 10,Tris
R3304 T4514 T4515 compound mM,Tris
R3305 T4515 T4541 nsubjpass Tris,separated
R3306 T4516 T4515 punct ",",Tris
R3307 T4517 T4519 nummod 150,NaCl
R3308 T4518 T4519 compound mM,NaCl
R3309 T4519 T4515 appos NaCl,Tris
R3310 T4520 T4519 punct ",",NaCl
R3311 T4521 T4522 nummod 1,%
R3312 T4522 T4524 compound %,X-100
R3313 T4523 T4524 compound Triton,X-100
R3314 T4524 T4519 conj X-100,NaCl
R3315 T4525 T4524 punct ",",X-100
R3316 T4526 T4527 nummod 0.5,%
R3317 T4527 T4528 compound %,NP-40
R3318 T4528 T4524 appos NP-40,X-100
R3319 T4529 T4528 punct ",",NP-40
R3320 T4530 T4531 nummod 0.5,%
R3321 T4531 T4532 compound %,deoxycholate

2_test

Id Subject Object Predicate Lexical cue
23472114-9892694-87899173 546-548 9892694 denotes 35
T16742 546-548 9892694 denotes 35

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4435 750-751 -RRB- denotes )
T4434 746-750 NNP denotes Inc.
T4433 744-745 -COMMA- denotes ,
T4432 734-744 NNP denotes Technology
T4431 724-733 NNP denotes Signaling
T4430 719-723 NNP denotes Cell
T4429 718-719 -LRB- denotes (
T4428 710-717 NN denotes tubulin
T4427 706-709 NN denotes α/β
T4426 702-705 CC denotes and
T4425 700-701 -RRB- denotes )
T4424 695-700 NN denotes GAPDH
T4423 694-695 -LRB- denotes (
T4422 680-693 NN denotes dehydrogenase
T4421 653-679 NN denotes glyceraldehyde-3-phosphate
T4420 651-652 -COMMA- denotes ,
T4419 650-651 -RRB- denotes )
T4418 635-650 NNP denotes Biotechnologies
T4417 630-634 NNP denotes Cruz
T4416 624-629 NNP denotes Santa
T4415 623-624 -LRB- denotes (
T4414 621-622 -RRB- denotes )
T4413 615-621 NN denotes sc-150
T4412 614-615 -LRB- denotes (
T4411 606-613 NN denotes C/EBP-β
T4410 604-605 -COLON- denotes :
T4409 597-604 VB denotes include
T4408 590-596 NN denotes assays
T4407 585-589 NN denotes blot
T4406 577-584 JJ denotes western
T4405 573-576 IN denotes for
T4404 568-572 VB denotes used
T4403 557-567 NN denotes antibodies
T4402 551-556 JJ denotes Other
T4401 548-549 -RRB- denotes ]
T4400 546-548 CD denotes 35
T4399 545-546 -LRB- denotes [
T4398 542-544 IN denotes in
T4397 539-541 IN denotes as
T4396 534-538 FW denotes coli
T4395 531-533 FW denotes E.
T4394 528-530 IN denotes in
T4393 519-527 VB denotes produced
T4392 511-518 NN denotes protein
T4391 504-510 NN denotes fusion
T4390 495-503 NN denotes SerpinB2
T4389 484-494 NN denotes GST-murine
T4388 472-483 JJ denotes recombinant
T4387 463-471 VB denotes purified
T4386 461-462 DT denotes a
T4385 456-460 IN denotes with
T4384 443-455 NN denotes immunization
T4383 437-442 IN denotes after
T4382 428-436 VB denotes prepared
T4381 423-427 VB denotes were
T4380 412-422 NN denotes antibodies
T4379 403-411 NN denotes SerpinB2
T4378 392-402 JJ denotes anti-mouse
T4377 385-391 NN denotes rabbit
T4376 376-384 VB denotes purified
T4375 367-375 NN denotes Affinity
T4374 356-365 RB denotes overnight
T4373 345-355 NN denotes antibodies
T4372 337-344 JJ denotes primary
T4371 332-336 IN denotes with
T4370 322-331 VB denotes incubated
T4369 318-321 CC denotes and
T4368 316-317 -COMMA- denotes ,
T4367 315-316 -RRB- denotes )
T4366 307-315 CD denotes Tween-20
T4365 305-306 NN denotes %
T4364 302-305 CD denotes 0.1
T4363 300-301 -COMMA- denotes ,
T4362 297-300 NNP denotes PBS
T4361 294-296 NN denotes 1X
T4360 293-294 -LRB- denotes (
T4359 287-292 NN denotes PBS-T
T4358 284-286 IN denotes in
T4357 279-283 NN denotes milk
T4356 277-278 NN denotes %
T4355 276-277 CD denotes 5
T4354 271-275 IN denotes with
T4353 263-270 VB denotes blocked
T4352 250-262 RB denotes subsequently
T4351 245-249 VB denotes were
T4350 235-244 NN denotes Membranes
T4349 224-233 NN denotes membranes
T4348 219-223 NN denotes PVDF
T4347 216-218 TO denotes to
T4346 204-215 VB denotes transferred
T4345 200-203 CC denotes and
T4344 198-199 -COMMA- denotes ,
T4343 197-198 -RRB- denotes )
T4342 187-197 NN denotes Invitrogen
T4341 186-187 -LRB- denotes (
T4340 181-185 NN denotes gels
T4339 174-180 NN denotes NuPAGE
T4338 165-173 JJ denotes Bis-Tris
T4337 163-164 NN denotes %
T4336 159-163 CD denotes 4–12
T4310 61-64 CD denotes 150
T4309 59-60 -COMMA- denotes ,
T4308 55-59 NNP denotes Tris
T4307 52-54 NN denotes mM
T4306 49-51 CD denotes 10
T4305 48-49 -LRB- denotes (
T4304 41-47 NN denotes buffer
T4303 36-40 NN denotes RIPA
T4302 33-35 IN denotes in
T4301 24-32 VB denotes prepared
T4300 19-23 VB denotes were
T4299 11-18 NN denotes lysates
T4298 6-10 NN denotes cell
T4297 0-5 JJ denotes Whole
T4335 156-158 IN denotes on
T4334 146-155 VB denotes separated
T4333 141-145 VB denotes were
T4332 132-140 NN denotes proteins
T4331 130-131 -COMMA- denotes ,
T4330 129-130 -RRB- denotes )
T4329 126-129 NN denotes SDS
T4328 124-125 NN denotes %
T4327 121-124 CD denotes 0.1
T4326 119-120 -COMMA- denotes ,
T4325 107-119 NN denotes deoxycholate
T4324 105-106 NN denotes %
T4323 102-105 CD denotes 0.5
T4322 100-101 -COMMA- denotes ,
T4321 95-100 NN denotes NP-40
T4320 93-94 NN denotes %
T4319 90-93 CD denotes 0.5
T4318 88-89 -COMMA- denotes ,
T4317 83-88 NN denotes X-100
T4316 76-82 NN denotes Triton
T4315 75-76 NN denotes %
T4314 74-75 CD denotes 1
T4313 72-73 -COMMA- denotes ,
T4312 68-72 NN denotes NaCl
T4311 65-67 NN denotes mM
R3140 T4299 T4297 arg1Of lysates,Whole
R3141 T4299 T4298 arg1Of lysates,cell
R3142 T4299 T4300 arg1Of lysates,were
R3143 T4299 T4301 arg2Of lysates,prepared
R3144 T4301 T4300 arg2Of prepared,were
R3145 T4301 T4302 arg1Of prepared,in
R3146 T4301 T4305 arg1Of prepared,(
R3147 T4304 T4302 arg2Of buffer,in
R3148 T4304 T4303 arg1Of buffer,RIPA
R3149 T4308 T4305 arg2Of Tris,(
R3150 T4308 T4306 arg1Of Tris,10
R3151 T4308 T4307 arg1Of Tris,mM
R3152 T4308 T4309 arg1Of Tris,","
R3153 T4308 T4326 arg1Of Tris,","
R3154 T4310 T4311 arg1Of 150,mM
R3155 T4312 T4310 arg1Of NaCl,150
R3156 T4312 T4313 arg1Of NaCl,","
R3157 T4313 T4318 arg1Of ",",","
R3158 T4314 T4315 arg1Of 1,%
R3159 T4317 T4313 arg2Of X-100,","
R3160 T4317 T4314 arg1Of X-100,1
R3161 T4317 T4316 arg1Of X-100,Triton
R3162 T4318 T4322 arg1Of ",",","
R3163 T4319 T4320 arg1Of 0.5,%
R3164 T4321 T4318 arg2Of NP-40,","
R3165 T4321 T4319 arg1Of NP-40,0.5
R3166 T4322 T4309 arg2Of ",",","
R3167 T4323 T4324 arg1Of 0.5,%
R3168 T4325 T4322 arg2Of deoxycholate,","
R3169 T4325 T4323 arg1Of deoxycholate,0.5
R3170 T4327 T4328 arg1Of 0.1,%
R3171 T4329 T4326 arg2Of SDS,","
R3172 T4329 T4327 arg1Of SDS,0.1
R3173 T4330 T4305 arg3Of ),(
R3174 T4332 T4333 arg1Of proteins,were
R3175 T4332 T4334 arg2Of proteins,separated
R3176 T4332 T4346 arg2Of proteins,transferred
R3177 T4334 T4335 arg1Of separated,on
R3178 T4334 T4345 arg1Of separated,and
R3179 T4336 T4337 arg1Of 4–12,%
R3180 T4340 T4335 arg2Of gels,on
R3181 T4340 T4336 arg1Of gels,4–12
R3182 T4340 T4338 arg1Of gels,Bis-Tris
R3183 T4340 T4339 arg1Of gels,NuPAGE
R3184 T4340 T4341 arg1Of gels,(
R3185 T4342 T4341 arg2Of Invitrogen,(
R3186 T4343 T4341 arg3Of ),(
R3187 T4345 T4300 modOf and,were
R3188 T4345 T4331 arg1Of and,","
R3189 T4345 T4333 arg2Of and,were
R3190 T4345 T4344 arg1Of and,","
R3191 T4346 T4345 arg2Of transferred,and
R3192 T4346 T4347 arg1Of transferred,to
R3193 T4349 T4347 arg2Of membranes,to
R3194 T4349 T4348 arg1Of membranes,PVDF
R3195 T4350 T4351 arg1Of Membranes,were
R3196 T4350 T4353 arg2Of Membranes,blocked
R3197 T4350 T4370 arg2Of Membranes,incubated
R3198 T4353 T4354 arg1Of blocked,with
R3199 T4353 T4369 arg1Of blocked,and
R3200 T4355 T4356 arg1Of 5,%
R3201 T4357 T4354 arg2Of milk,with
R3202 T4357 T4355 arg1Of milk,5
R3203 T4357 T4358 arg1Of milk,in
R3204 T4359 T4358 arg2Of PBS-T,in
R3205 T4359 T4360 arg1Of PBS-T,(
R3206 T4362 T4360 arg2Of PBS,(
R3207 T4362 T4361 arg1Of PBS,1X
R3208 T4362 T4363 arg1Of PBS,","
R3209 T4365 T4364 arg1Of %,0.1
R3210 T4366 T4363 arg2Of Tween-20,","
R3211 T4366 T4365 arg1Of Tween-20,%
R3212 T4367 T4360 arg3Of ),(
R3213 T4369 T4351 arg2Of and,were
R3214 T4369 T4352 arg1Of and,subsequently
R3215 T4369 T4368 arg1Of and,","
R3216 T4370 T4369 arg2Of incubated,and
R3217 T4370 T4371 arg1Of incubated,with
R3218 T4370 T4374 arg1Of incubated,overnight
R3219 T4373 T4371 arg2Of antibodies,with
R3220 T4373 T4372 arg1Of antibodies,primary
R3221 T4380 T4375 arg1Of antibodies,Affinity
R3222 T4380 T4376 arg2Of antibodies,purified
R3223 T4380 T4377 arg1Of antibodies,rabbit
R3224 T4380 T4378 arg1Of antibodies,anti-mouse
R3225 T4380 T4379 arg1Of antibodies,SerpinB2
R3226 T4380 T4381 arg1Of antibodies,were
R3227 T4380 T4382 arg2Of antibodies,prepared
R3228 T4382 T4381 arg2Of prepared,were
R3229 T4382 T4383 arg1Of prepared,after
R3230 T4384 T4383 arg2Of immunization,after
R3231 T4384 T4385 arg1Of immunization,with
R3232 T4392 T4385 arg2Of protein,with
R3233 T4392 T4386 arg1Of protein,a
R3234 T4392 T4387 arg2Of protein,purified
R3235 T4392 T4388 arg1Of protein,recombinant
R3236 T4392 T4389 arg1Of protein,GST-murine
R3237 T4392 T4390 arg1Of protein,SerpinB2
R3238 T4392 T4391 arg1Of protein,fusion
R3239 T4392 T4393 arg2Of protein,produced
R3240 T4393 T4394 arg1Of produced,in
R3241 T4393 T4398 arg1Of produced,in
R3242 T4393 T4399 arg1Of produced,[
R3243 T4396 T4394 arg2Of coli,in
R3244 T4396 T4395 arg1Of coli,E.
R3245 T4398 T4397 arg1Of in,as
R3246 T4400 T4399 arg2Of 35,[
R3247 T4401 T4399 arg3Of ],[
R3248 T4403 T4402 arg1Of antibodies,Other
R3249 T4403 T4404 arg2Of antibodies,used
R3250 T4403 T4409 arg1Of antibodies,include
R3251 T4404 T4405 arg1Of used,for
R3252 T4408 T4405 arg2Of assays,for
R3253 T4408 T4406 arg1Of assays,western
R3254 T4408 T4407 arg1Of assays,blot
R3255 T4409 T4410 arg1Of include,:
R3256 T4411 T4412 arg1Of C/EBP-β,(
R3257 T4411 T4415 arg1Of C/EBP-β,(
R3258 T4411 T4420 arg1Of C/EBP-β,","
R3259 T4413 T4412 arg2Of sc-150,(
R3260 T4414 T4412 arg3Of ),(
R3261 T4418 T4415 arg2Of Biotechnologies,(
R3262 T4418 T4416 arg1Of Biotechnologies,Santa
R3263 T4418 T4417 arg1Of Biotechnologies,Cruz
R3264 T4419 T4415 arg3Of ),(
R3265 T4420 T4426 arg1Of ",",and
R3266 T4422 T4420 arg2Of dehydrogenase,","
R3267 T4422 T4421 arg1Of dehydrogenase,glyceraldehyde-3-phosphate
R3268 T4422 T4423 arg1Of dehydrogenase,(
R3269 T4424 T4423 arg2Of GAPDH,(
R3270 T4425 T4423 arg3Of ),(
R3271 T4426 T4409 arg2Of and,include
R3272 T4428 T4426 arg2Of tubulin,and
R3273 T4428 T4427 arg1Of tubulin,α/β
R3274 T4428 T4429 arg1Of tubulin,(
R3275 T4432 T4429 arg2Of Technology,(
R3276 T4432 T4430 arg1Of Technology,Cell
R3277 T4432 T4431 arg1Of Technology,Signaling
R3278 T4432 T4433 arg1Of Technology,","
R3279 T4434 T4433 arg2Of Inc.,","
R3280 T4435 T4429 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4273 695-700 Protein denotes GAPDH
T4272 653-693 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4271 606-613 Protein denotes C/EBP-β
T4270 484-518 Protein denotes GST-murine SerpinB2 fusion protein

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4445 695-700 http://www.uniprot.org/uniprot/P04406 denotes GAPDH
T4444 668-693 http://www.uniprot.org/uniprot/P04406 denotes 3-phosphate dehydrogenase
T4443 606-613 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T4442 495-503 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T4441 403-411 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

UBERON-AE

Id Subject Object Predicate Lexical cue
T4259 279-283 http://purl.obolibrary.org/obo/UBERON_0001913 denotes milk

GO-MF

Id Subject Object Predicate Lexical cue
T4276 557-567 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T4275 412-422 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T4274 345-355 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T4285 557-567 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T4284 412-422 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T4283 345-355 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T4282 557-567 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T4281 412-422 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T4280 345-355 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T4279 235-244 http://purl.obolibrary.org/obo/GO_0016020 denotes Membranes
T4278 224-233 http://purl.obolibrary.org/obo/GO_0016020 denotes membranes
T4277 6-10 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T4264 551-752 Sentence denotes Other antibodies used for western blot assays include: C/EBP-β (sc-150) (Santa Cruz Biotechnologies), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and α/β tubulin (Cell Signaling Technology, Inc.).
T4263 367-550 Sentence denotes Affinity purified rabbit anti-mouse SerpinB2 antibodies were prepared after immunization with a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli as in [35].
T4262 235-366 Sentence denotes Membranes were subsequently blocked with 5% milk in PBS-T (1X PBS, 0.1% Tween-20), and incubated with primary antibodies overnight.
T4261 0-234 Sentence denotes Whole cell lysates were prepared in RIPA buffer (10 mM Tris, 150 mM NaCl, 1%Triton X-100, 0.5% NP-40, 0.5% deoxycholate, 0.1% SDS), proteins were separated on 4–12% Bis-Tris NuPAGE gels (Invitrogen), and transferred to PVDF membranes.
T53 0-234 Sentence denotes Whole cell lysates were prepared in RIPA buffer (10 mM Tris, 150 mM NaCl, 1%Triton X-100, 0.5% NP-40, 0.5% deoxycholate, 0.1% SDS), proteins were separated on 4–12% Bis-Tris NuPAGE gels (Invitrogen), and transferred to PVDF membranes.
T54 235-366 Sentence denotes Membranes were subsequently blocked with 5% milk in PBS-T (1X PBS, 0.1% Tween-20), and incubated with primary antibodies overnight.
T55 367-550 Sentence denotes Affinity purified rabbit anti-mouse SerpinB2 antibodies were prepared after immunization with a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli as in [35].
T56 551-752 Sentence denotes Other antibodies used for western blot assays include: C/EBP-β (sc-150) (Santa Cruz Biotechnologies), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and α/β tubulin (Cell Signaling Technology, Inc.).

simple1

Id Subject Object Predicate Lexical cue
T4293 695-700 Protein denotes GAPDH
T4292 653-693 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4291 606-613 Protein denotes C/EBP-β
T4290 484-518 Protein denotes GST-murine SerpinB2 fusion protein

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4440 519-527 Gene_expression denotes produced
T4439 695-700 Protein denotes GAPDH
T4438 653-693 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4437 606-613 Protein denotes C/EBP-β
T4436 484-518 Protein denotes GST-murine SerpinB2 fusion protein
R3281 T4436 T4440 themeOf GST-murine SerpinB2 fusion protein,produced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4460 519-527 Gene_expression denotes produced
T4459 695-700 Protein denotes GAPDH
T4458 653-693 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4457 606-613 Protein denotes C/EBP-β
T4456 484-518 Protein denotes GST-murine SerpinB2 fusion protein
R3285 T4456 T4460 themeOf GST-murine SerpinB2 fusion protein,produced

DLUT931

Id Subject Object Predicate Lexical cue
T4455 519-527 Gene_expression denotes produced
T4454 695-700 Protein denotes GAPDH
T4453 653-693 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4452 606-613 Protein denotes C/EBP-β
T4451 484-518 Protein denotes GST-murine SerpinB2 fusion protein
R3284 T4451 T4455 themeOf GST-murine SerpinB2 fusion protein,produced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4500 461-538 Gene_expression denotes a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli
T4499 61-72 Entity denotes 150 mM NaCl
T4498 695-700 Protein denotes GAPDH
T4497 146-173 Entity denotes separated on 4–12% Bis-Tris
T4496 706-717 Protein denotes α/β tubulin
T4495 121-129 Protein denotes 0.1% SDS
T4494 219-233 Entity denotes PVDF membranes
T4493 102-130 Entity denotes 0.5% deoxycholate, 0.1% SDS)
T4492 719-723 Entity denotes Cell
T4491 653-701 Protein denotes glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
T4490 49-94 Entity denotes 10 mM Tris, 150 mM NaCl, 1%Triton X-100, 0.5%
T4489 577-596 Entity denotes western blot assays
T4488 287-301 Entity denotes PBS-T (1X PBS,
T4487 606-622 Protein denotes C/EBP-β (sc-150)
T4486 219-223 Entity denotes PVDF
T4485 55-73 Entity denotes Tris, 150 mM NaCl,
T4484 461-538 Protein denotes a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli
T4483 235-244 Entity denotes Membranes
T4482 181-198 Entity denotes gels (Invitrogen)
T4481 132-140 Protein denotes proteins
T4480 403-422 Entity denotes SerpinB2 antibodies
T4479 403-411 Protein denotes SerpinB2
T4478 337-355 Entity denotes primary antibodies
T4477 551-596 Entity denotes Other antibodies used for western blot assays
R3290 T4484 T4500 themeOf a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli,a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T4468 706-717 Protein denotes α/β tubulin
T4467 695-700 Protein denotes GAPDH
T4466 653-693 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4465 606-613 Protein denotes C/EBP-β
T4464 519-527 Gene_expression denotes produced
T4463 519-527 Gene_expression denotes produced
T4462 488-518 Protein denotes murine SerpinB2 fusion protein
T4461 484-487 Protein denotes GST
R3286 T4461 T4463 themeOf GST,produced
R3287 T4462 T4464 themeOf murine SerpinB2 fusion protein,produced

testone

Id Subject Object Predicate Lexical cue
T4250 695-700 Protein denotes GAPDH
T4249 653-693 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4248 606-613 Protein denotes C/EBP-β
T4247 484-518 Protein denotes GST-murine SerpinB2 fusion protein
R3134 T4250 T4249 equivalentTo GAPDH,glyceraldehyde-3-phosphate dehydrogenase

test3

Id Subject Object Predicate Lexical cue
T4258 695-700 Protein denotes GAPDH
T4257 653-693 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4256 606-613 Protein denotes C/EBP-β
T4255 484-518 Protein denotes GST-murine SerpinB2 fusion protein
T4254 695-700 Protein denotes GAPDH
T4253 653-693 Protein denotes glyceraldehyde-3-phosphate dehydrogenase
T4252 606-613 Protein denotes C/EBP-β
T4251 484-518 Protein denotes GST-murine SerpinB2 fusion protein
R3135 T4258 T4257 equivalentTo GAPDH,glyceraldehyde-3-phosphate dehydrogenase