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PMC:3589482 / 785-1058 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T929 272-273 . denotes .
T928 267-272 NN denotes mouse
T927 263-266 DT denotes the
T926 260-262 IN denotes in
T925 250-259 VBD denotes conserved
T924 241-249 NN denotes promoter
T923 232-240 NNP denotes SERPINB2
T922 226-231 JJ denotes human
T921 222-225 DT denotes the
T920 219-221 IN denotes in
T919 210-218 NNS denotes elements
T918 199-209 JJ denotes cis-acting
T917 188-198 JJ denotes regulatory
T916 180-187 JJ denotes several
T915 169-179 VBD denotes identified
T914 165-168 CC denotes and
T913 156-164 NNS denotes elements
T912 145-155 JJ denotes regulatory
T911 134-144 JJ denotes functional
T910 123-133 RB denotes homologous
T909 119-122 IN denotes for
T908 114-118 NN denotes gene
T907 108-113 JJ denotes human
T906 104-107 DT denotes the
T905 101-103 IN denotes of
T904 92-100 NN denotes sequence
T903 88-91 DT denotes the
T902 83-87 IN denotes with
T901 74-82 NN denotes sequence
T900 65-73 NN denotes flanking
T899 63-64 NN denotes ′
T898 62-63 CD denotes 5
T897 55-61 NN denotes murine
T896 51-54 DT denotes the
T895 48-50 IN denotes of
T894 39-47 NN denotes sequence
T893 35-38 NNP denotes DNA
T892 31-34 DT denotes the
T891 22-30 VBD denotes compared
T890 19-21 PRP denotes we
T889 17-18 , denotes ,
T888 9-17 NN denotes addition
T887 6-8 IN denotes In
T886 4-5 . denotes .
R474 T887 T891 prep In,compared
R475 T888 T887 pobj addition,In
R476 T889 T891 punct ",",compared
R477 T890 T891 nsubj we,compared
R478 T891 T891 ROOT compared,compared
R479 T892 T894 det the,sequence
R480 T893 T894 compound DNA,sequence
R481 T894 T891 dobj sequence,compared
R482 T895 T894 prep of,sequence
R483 T896 T901 det the,sequence
R484 T897 T901 nmod murine,sequence
R485 T898 T897 nummod 5,murine
R486 T899 T901 compound ′,sequence
R487 T900 T901 compound flanking,sequence
R488 T901 T895 pobj sequence,of
R489 T902 T891 prep with,compared
R490 T903 T904 det the,sequence
R491 T904 T902 pobj sequence,with
R492 T905 T904 prep of,sequence
R493 T906 T908 det the,gene
R494 T907 T908 amod human,gene
R495 T908 T905 pobj gene,of
R496 T909 T908 prep for,gene
R497 T910 T911 advmod homologous,functional
R498 T911 T913 amod functional,elements
R499 T912 T913 amod regulatory,elements
R500 T913 T909 pobj elements,for
R501 T914 T891 cc and,compared
R502 T915 T891 conj identified,compared
R503 T916 T919 amod several,elements
R504 T917 T919 amod regulatory,elements
R505 T918 T919 amod cis-acting,elements
R506 T919 T915 dobj elements,identified
R507 T920 T919 prep in,elements
R508 T921 T924 det the,promoter
R509 T922 T924 amod human,promoter
R510 T923 T924 compound SERPINB2,promoter
R511 T924 T920 pobj promoter,in
R512 T925 T919 acl conserved,elements
R513 T926 T925 prep in,conserved
R514 T927 T928 det the,mouse
R515 T928 T926 pobj mouse,in
R516 T929 T891 punct .,compared

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T347 22-30 VB denotes compared
T346 19-21 PRP denotes we
T345 17-18 -COMMA- denotes ,
T344 9-17 NN denotes addition
T343 6-8 IN denotes In
T383 267-272 NN denotes mouse
T382 263-266 DT denotes the
T381 260-262 IN denotes in
T380 250-259 VB denotes conserved
T379 241-249 NN denotes promoter
T378 232-240 NN denotes SERPINB2
T377 226-231 JJ denotes human
T376 222-225 DT denotes the
T375 219-221 IN denotes in
T374 210-218 NN denotes elements
T373 199-209 JJ denotes cis-acting
T372 188-198 JJ denotes regulatory
T371 180-187 JJ denotes several
T370 169-179 VB denotes identified
T369 165-168 CC denotes and
T368 156-164 NN denotes elements
T367 145-155 JJ denotes regulatory
T366 134-144 JJ denotes functional
T365 123-133 JJ denotes homologous
T364 119-122 IN denotes for
T363 114-118 NN denotes gene
T362 108-113 JJ denotes human
T361 104-107 DT denotes the
T360 101-103 IN denotes of
T359 92-100 NN denotes sequence
T358 88-91 DT denotes the
T357 83-87 IN denotes with
T356 74-82 NN denotes sequence
T355 65-73 NN denotes flanking
T354 62-64 NN denotes 5′
T353 55-61 JJ denotes murine
T352 51-54 DT denotes the
T351 48-50 IN denotes of
T350 39-47 NN denotes sequence
T349 35-38 NN denotes DNA
T348 31-34 DT denotes the
R154 T344 T343 arg2Of addition,In
R155 T346 T347 arg1Of we,compared
R156 T346 T370 arg1Of we,identified
R157 T347 T369 arg1Of compared,and
R158 T350 T347 arg2Of sequence,compared
R159 T350 T348 arg1Of sequence,the
R160 T350 T349 arg1Of sequence,DNA
R161 T350 T351 arg1Of sequence,of
R162 T350 T357 arg1Of sequence,with
R163 T356 T351 arg2Of sequence,of
R164 T356 T352 arg1Of sequence,the
R165 T356 T353 arg1Of sequence,murine
R166 T356 T354 arg1Of sequence,5′
R167 T356 T355 arg1Of sequence,flanking
R168 T359 T357 arg2Of sequence,with
R169 T359 T358 arg1Of sequence,the
R170 T359 T360 arg1Of sequence,of
R171 T359 T364 arg1Of sequence,for
R172 T363 T360 arg2Of gene,of
R173 T363 T361 arg1Of gene,the
R174 T363 T362 arg1Of gene,human
R175 T368 T364 arg2Of elements,for
R176 T368 T365 arg1Of elements,homologous
R177 T368 T366 arg1Of elements,functional
R178 T368 T367 arg1Of elements,regulatory
R179 T369 T343 arg1Of and,In
R180 T369 T345 arg1Of and,","
R181 T370 T369 arg2Of identified,and
R182 T374 T370 arg2Of elements,identified
R183 T374 T371 arg1Of elements,several
R184 T374 T372 arg1Of elements,regulatory
R185 T374 T373 arg1Of elements,cis-acting
R186 T374 T375 arg1Of elements,in
R187 T379 T375 arg2Of promoter,in
R188 T379 T376 arg1Of promoter,the
R189 T379 T377 arg1Of promoter,human
R190 T379 T378 arg1Of promoter,SERPINB2
R191 T379 T380 arg2Of promoter,conserved
R192 T380 T381 arg1Of conserved,in
R193 T383 T381 arg2Of mouse,in
R194 T383 T382 arg1Of mouse,the

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T167 232-240 Protein denotes SERPINB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T538 232-240 http://www.uniprot.org/uniprot/P05120 denotes SERPINB2

sentences

Id Subject Object Predicate Lexical cue
T103 6-273 Sentence denotes In addition, we compared the DNA sequence of the murine 5′ flanking sequence with the sequence of the human gene for homologous functional regulatory elements and identified several regulatory cis-acting elements in the human SERPINB2 promoter conserved in the mouse.
T7 6-273 Sentence denotes In addition, we compared the DNA sequence of the murine 5′ flanking sequence with the sequence of the human gene for homologous functional regulatory elements and identified several regulatory cis-acting elements in the human SERPINB2 promoter conserved in the mouse.

simple1

Id Subject Object Predicate Lexical cue
T220 232-240 Protein denotes SERPINB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T501 232-240 Protein denotes SERPINB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T611 232-240 Protein denotes SERPINB2

DLUT931

Id Subject Object Predicate Lexical cue
T577 232-240 Protein denotes SERPINB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T761 222-272 Binding denotes the human SERPINB2 promoter conserved in the mouse
T752 232-240 Protein denotes SERPINB2
T751 101-118 Protein denotes of the human gene
T722 35-38 Entity denotes DNA
T738 222-272 Entity denotes the human SERPINB2 promoter conserved in the mouse
R728 T738 T761 themeOf the human SERPINB2 promoter conserved in the mouse,the human SERPINB2 promoter conserved in the mouse

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T650 226-249 Protein denotes human SERPINB2 promoter

testone

Id Subject Object Predicate Lexical cue
T30 232-240 Protein denotes SERPINB2

test3

Id Subject Object Predicate Lexical cue
T81 232-240 Protein denotes SERPINB2
T59 232-240 Protein denotes SERPINB2