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PMC:3589482 / 7111-8265 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4239 1153-1154 . denotes .
T4238 1145-1153 CD denotes AF339731
T4237 1143-1144 . denotes .
T4236 1141-1143 NNP denotes No
T4235 1131-1140 NNP denotes Accession
T4234 1126-1130 IN denotes with
T4233 1121-1125 NNP denotes Bank
T4232 1116-1120 NNP denotes Data
T4231 1098-1115 NNP denotes GenBank/EMBL/DDBJ
T4230 1095-1097 IN denotes in
T4229 1085-1094 VBN denotes deposited
T4228 1081-1084 VBD denotes was
T4227 1072-1080 NN denotes sequence
T4226 1067-1071 DT denotes This
T4225 1065-1066 . denotes .
T4224 1064-1065 -RRB- denotes )
T4223 1052-1064 NNP denotes Perkin-Elmer
T4222 1051-1052 -LRB- denotes (
T4221 1041-1050 NN denotes sequencer
T4220 1036-1040 NNP denotes 373A
T4219 1033-1035 NNP denotes PE
T4218 1031-1032 DT denotes a
T4217 1027-1030 CC denotes and
T4216 1025-1026 -RRB- denotes )
T4215 1013-1025 NNP denotes Perkin-Elmer
T4214 1012-1013 -LRB- denotes (
T4213 1008-1011 NN denotes kit
T4212 999-1007 NN denotes reaction
T4211 993-998 JJ denotes ready
T4210 982-992 VBG denotes sequencing
T4209 976-981 NN denotes cycle
T4208 965-975 NN denotes terminator
T4207 961-964 NN denotes dye
T4206 955-960 NNP denotes PRISM
T4205 951-954 NNP denotes ABI
T4204 947-950 DT denotes the
T4203 941-946 VBG denotes using
T4202 930-940 VBN denotes determined
T4201 926-929 VBD denotes was
T4200 919-925 NN denotes region
T4199 910-918 NN denotes flanking
T4198 908-909 NN denotes ′
T4197 907-908 CD denotes 5
T4196 902-906 NN denotes gene
T4195 893-901 NNP denotes SerpinB2
T4194 886-892 NN denotes murine
T4193 883-885 NN denotes bp
T4192 878-882 CD denotes 4480
T4191 874-877 DT denotes the
T4190 871-873 IN denotes of
T4189 862-870 NN denotes sequence
T4188 851-861 NN denotes nucleotide
T4187 847-850 DT denotes The
T4186 845-846 . denotes .
T4185 835-845 NN denotes sequencing
T4184 831-834 NN denotes DNA
T4183 827-830 CC denotes and
T4182 817-826 NN denotes digestion
T4181 810-816 NN denotes enzyme
T4180 798-809 NN denotes restriction
T4179 795-797 IN denotes by
T4178 786-794 VBN denotes verified
T4177 781-785 VBD denotes were
T4176 773-780 NNS denotes inserts
T4175 763-772 VBN denotes Subcloned
T4174 761-762 . denotes .
T4173 749-761 NNS denotes orientations
T4172 740-748 JJ denotes opposite
T4171 737-739 IN denotes in
T4170 730-736 VBN denotes cloned
T4169 728-729 , denotes ,
T4168 720-728 NN denotes fragment
T4167 714-719 NNP denotes EcoRI
T4166 706-713 NNP denotes pDB9406
T4165 702-705 DT denotes the
T4164 699-701 IN denotes of
T4163 690-698 RB denotes upstream
T4162 678-689 RB denotes immediately
T4161 670-677 VBN denotes located
T4160 668-669 , denotes ,
T4159 660-668 NN denotes fragment
T4158 652-659 JJ denotes genomic
T4157 646-651 NNP denotes EcoRI
T4156 643-645 NN denotes kb
T4155 639-642 CD denotes 1.2
T4154 637-638 DT denotes a
T4153 629-636 VBP denotes contain
T4152 618-628 NN denotes pDB9402-42
T4151 614-617 CC denotes and
T4150 603-613 NN denotes pDB9402-41
T4149 601-602 : denotes ;
T4148 597-601 NN denotes site
T4147 586-596 NN denotes initiation
T4146 572-585 NN denotes transcription
T4145 568-571 DT denotes the
T4144 559-567 VBG denotes spanning
T4143 550-558 NN denotes fragment
T4142 542-549 JJ denotes genomic
T4141 531-541 NNP denotes EcoRI/SpeI
T4140 528-530 NN denotes kb
T4139 524-527 CD denotes 4.4
T4138 522-523 DT denotes a
T4137 513-521 VBZ denotes contains
T4136 505-512 JJ denotes pDB9406
T4135 503-504 . denotes .
T4134 497-503 NNP denotes Geneva
T4133 494-496 IN denotes of
T4132 483-493 NNP denotes University
T4131 481-482 , denotes ,
T4130 476-481 NNP denotes Belin
T4129 466-475 NNP denotes Dominique
T4128 462-465 NNP denotes Dr.
T4127 459-461 IN denotes by
T4126 450-458 VBN denotes provided
T4125 443-449 RB denotes kindly
T4124 438-442 VBD denotes were
T4123 436-437 , denotes ,
T4122 430-436 NN denotes strain
T4121 424-429 NN denotes mouse
T4120 420-423 CD denotes 129
T4119 418-419 DT denotes a
T4118 413-417 IN denotes from
T4117 404-412 VBN denotes prepared
T4116 396-403 NN denotes library
T4115 388-395 JJ denotes genomic
T4114 386-387 -RRB- denotes )
T4113 376-386 NNP denotes Stratagene
T4112 375-376 -LRB- denotes (
T4111 368-374 NNP denotes λFIXII
T4110 366-367 DT denotes a
T4109 361-365 IN denotes from
T4108 352-360 VBD denotes isolated
T4107 348-351 NNP denotes DNA
T4106 340-347 JJ denotes genomic
T4105 329-339 VBG denotes containing
T4104 318-328 NNP denotes pDB9402-42
T4103 314-317 CC denotes and
T4102 303-313 NNP denotes pDB9402-41
T4101 301-302 , denotes ,
T4100 294-301 NNP denotes pDB9406
T4099 285-293 NNP denotes Plasmids
T4098 283-284 . denotes .
T4097 274-283 NN denotes digestion
T4096 270-273 NNP denotes III
T4095 258-269 NN denotes exonuclease
T4063 30-38 NN denotes sequence
T4062 26-29 NNP denotes DNA
T4061 22-25 NNP denotes The
T4060 13-21 NNP denotes Analysis
T4059 4-12 NNP denotes Sequence
T4094 255-257 IN denotes by
T4093 244-254 VBN denotes introduced
T4092 234-243 NNS denotes deletions
T4091 223-233 VBG denotes containing
T4090 212-222 NN denotes pDB9402-42
T4089 208-211 CC denotes and
T4088 197-207 NN denotes pDB9402-41
T4087 192-196 IN denotes from
T4086 183-191 VBN denotes prepared
T4085 174-182 NNS denotes plasmids
T4084 171-173 TO denotes to
T4083 162-170 NN denotes addition
T4082 159-161 IN denotes in
T4081 157-158 , denotes ,
T4080 147-157 NNP denotes pDB9402-42
T4079 143-146 CC denotes and
T4078 132-142 NNP denotes pDB9402-41
T4077 130-131 , denotes ,
T4076 123-130 NNP denotes pDB9406
T4075 114-122 NNS denotes plasmids
T4074 104-113 JJ denotes pUC-based
T4073 100-103 DT denotes the
T4072 89-99 VBG denotes sequencing
T4071 86-88 IN denotes by
T4070 75-85 VBN denotes determined
T4069 71-74 VBD denotes was
T4068 62-70 NN denotes promoter
T4067 53-61 NNP denotes SerpinB2
T4066 46-52 NN denotes murine
T4065 42-45 DT denotes the
T4064 39-41 IN denotes of
T4058 0-3 NNP denotes DNA
R2952 T4058 T4060 compound DNA,Analysis
R2953 T4059 T4060 compound Sequence,Analysis
R2954 T4060 T4070 nsubjpass Analysis,determined
R2955 T4061 T4063 det The,sequence
R2956 T4062 T4063 compound DNA,sequence
R2957 T4063 T4060 appos sequence,Analysis
R2958 T4064 T4063 prep of,sequence
R2959 T4065 T4068 det the,promoter
R2960 T4066 T4068 compound murine,promoter
R2961 T4067 T4068 compound SerpinB2,promoter
R2962 T4068 T4064 pobj promoter,of
R2963 T4069 T4070 auxpass was,determined
R2964 T4070 T4070 ROOT determined,determined
R2965 T4071 T4070 prep by,determined
R2966 T4072 T4071 pcomp sequencing,by
R2967 T4073 T4075 det the,plasmids
R2968 T4074 T4075 amod pUC-based,plasmids
R2969 T4075 T4072 dobj plasmids,sequencing
R2970 T4076 T4072 npadvmod pDB9406,sequencing
R2971 T4077 T4076 punct ",",pDB9406
R2972 T4078 T4076 conj pDB9402-41,pDB9406
R2973 T4079 T4078 cc and,pDB9402-41
R2974 T4080 T4078 conj pDB9402-42,pDB9402-41
R2975 T4081 T4072 punct ",",sequencing
R2976 T4082 T4072 prep in,sequencing
R2977 T4083 T4082 pobj addition,in
R2978 T4084 T4083 prep to,addition
R2979 T4085 T4084 pobj plasmids,to
R2980 T4086 T4085 acl prepared,plasmids
R2981 T4087 T4086 prep from,prepared
R2982 T4088 T4087 pobj pDB9402-41,from
R2983 T4089 T4088 cc and,pDB9402-41
R2984 T4090 T4088 conj pDB9402-42,pDB9402-41
R2985 T4091 T4085 prep containing,plasmids
R2986 T4092 T4091 dobj deletions,containing
R2987 T4093 T4092 acl introduced,deletions
R2988 T4094 T4093 agent by,introduced
R2989 T4095 T4097 amod exonuclease,digestion
R2990 T4096 T4097 compound III,digestion
R2991 T4097 T4094 pobj digestion,by
R2992 T4098 T4070 punct .,determined
R2993 T4099 T4100 compound Plasmids,pDB9406
R2994 T4100 T4100 ROOT pDB9406,pDB9406
R2995 T4101 T4100 punct ",",pDB9406
R2996 T4102 T4100 conj pDB9402-41,pDB9406
R2997 T4103 T4102 cc and,pDB9402-41
R2998 T4104 T4102 conj pDB9402-42,pDB9402-41
R2999 T4105 T4108 prep containing,isolated
R3000 T4106 T4107 compound genomic,DNA
R3001 T4107 T4108 nsubj DNA,isolated
R3002 T4108 T4108 ROOT isolated,isolated
R3003 T4109 T4108 prep from,isolated
R3004 T4110 T4111 det a,λFIXII
R3005 T4111 T4116 nmod λFIXII,library
R3006 T4112 T4111 punct (,λFIXII
R3007 T4113 T4111 appos Stratagene,λFIXII
R3008 T4114 T4111 punct ),λFIXII
R3009 T4115 T4116 amod genomic,library
R3010 T4116 T4109 pobj library,from
R3011 T4117 T4108 advcl prepared,isolated
R3012 T4118 T4117 prep from,prepared
R3013 T4119 T4122 det a,strain
R3014 T4120 T4122 nummod 129,strain
R3015 T4121 T4122 compound mouse,strain
R3016 T4122 T4118 pobj strain,from
R3017 T4123 T4108 punct ",",isolated
R3018 T4124 T4126 auxpass were,provided
R3019 T4125 T4126 advmod kindly,provided
R3020 T4126 T4108 advcl provided,isolated
R3021 T4127 T4126 agent by,provided
R3022 T4128 T4130 compound Dr.,Belin
R3023 T4129 T4130 compound Dominique,Belin
R3024 T4130 T4127 pobj Belin,by
R3025 T4131 T4130 punct ",",Belin
R3026 T4132 T4130 conj University,Belin
R3027 T4133 T4132 prep of,University
R3028 T4134 T4133 pobj Geneva,of
R3029 T4135 T4108 punct .,isolated
R3030 T4136 T4137 nsubj pDB9406,contains
R3031 T4137 T4153 ccomp contains,contain
R3032 T4138 T4143 det a,fragment
R3033 T4139 T4140 nummod 4.4,kb
R3034 T4140 T4143 nmod kb,fragment
R3035 T4141 T4143 nmod EcoRI/SpeI,fragment
R3036 T4142 T4143 compound genomic,fragment
R3037 T4143 T4137 dobj fragment,contains
R3038 T4144 T4143 acl spanning,fragment
R3039 T4145 T4148 det the,site
R3040 T4146 T4147 compound transcription,initiation
R3041 T4147 T4148 compound initiation,site
R3042 T4148 T4144 dobj site,spanning
R3043 T4149 T4153 punct ;,contain
R3044 T4150 T4153 nsubj pDB9402-41,contain
R3045 T4151 T4150 cc and,pDB9402-41
R3046 T4152 T4150 conj pDB9402-42,pDB9402-41
R3047 T4153 T4153 ROOT contain,contain
R3048 T4154 T4159 det a,fragment
R3049 T4155 T4156 nummod 1.2,kb
R3050 T4156 T4159 nmod kb,fragment
R3051 T4157 T4159 nmod EcoRI,fragment
R3052 T4158 T4159 compound genomic,fragment
R3053 T4159 T4153 dobj fragment,contain
R3054 T4160 T4159 punct ",",fragment
R3055 T4161 T4159 acl located,fragment
R3056 T4162 T4163 advmod immediately,upstream
R3057 T4163 T4161 advmod upstream,located
R3058 T4164 T4163 prep of,upstream
R3059 T4165 T4168 det the,fragment
R3060 T4166 T4167 compound pDB9406,EcoRI
R3061 T4167 T4168 compound EcoRI,fragment
R3062 T4168 T4164 pobj fragment,of
R3063 T4169 T4161 punct ",",located
R3064 T4170 T4159 acl cloned,fragment
R3065 T4171 T4170 prep in,cloned
R3066 T4172 T4173 amod opposite,orientations
R3067 T4173 T4171 pobj orientations,in
R3068 T4174 T4153 punct .,contain
R3069 T4175 T4176 amod Subcloned,inserts
R3070 T4176 T4178 nsubjpass inserts,verified
R3071 T4177 T4178 auxpass were,verified
R3072 T4178 T4178 ROOT verified,verified
R3073 T4179 T4178 agent by,verified
R3074 T4180 T4181 compound restriction,enzyme
R3075 T4181 T4182 compound enzyme,digestion
R3076 T4182 T4179 pobj digestion,by
R3077 T4183 T4182 cc and,digestion
R3078 T4184 T4185 compound DNA,sequencing
R3079 T4185 T4182 conj sequencing,digestion
R3080 T4186 T4178 punct .,verified
R3081 T4187 T4189 det The,sequence
R3082 T4188 T4189 compound nucleotide,sequence
R3083 T4189 T4202 nsubjpass sequence,determined
R3084 T4190 T4189 prep of,sequence
R3085 T4191 T4196 det the,gene
R3086 T4192 T4196 nummod 4480,gene
R3087 T4193 T4196 nmod bp,gene
R3088 T4194 T4196 compound murine,gene
R3089 T4195 T4196 compound SerpinB2,gene
R3090 T4196 T4200 nmod gene,region
R3091 T4197 T4198 nummod 5,′
R3092 T4198 T4200 amod ′,region
R3093 T4199 T4200 amod flanking,region
R3094 T4200 T4190 pobj region,of
R3095 T4201 T4202 auxpass was,determined
R3096 T4202 T4202 ROOT determined,determined
R3097 T4203 T4202 advcl using,determined
R3098 T4204 T4209 det the,cycle
R3099 T4205 T4209 compound ABI,cycle
R3100 T4206 T4209 compound PRISM,cycle
R3101 T4207 T4208 compound dye,terminator
R3102 T4208 T4209 compound terminator,cycle
R3103 T4209 T4203 dobj cycle,using
R3104 T4210 T4203 conj sequencing,using
R3105 T4211 T4213 amod ready,kit
R3106 T4212 T4213 compound reaction,kit
R3107 T4213 T4210 dobj kit,sequencing
R3108 T4214 T4213 punct (,kit
R3109 T4215 T4210 conj Perkin-Elmer,sequencing
R3110 T4216 T4215 punct ),Perkin-Elmer
R3111 T4217 T4210 cc and,sequencing
R3112 T4218 T4221 det a,sequencer
R3113 T4219 T4221 compound PE,sequencer
R3114 T4220 T4221 compound 373A,sequencer
R3115 T4221 T4210 conj sequencer,sequencing
R3116 T4222 T4221 punct (,sequencer
R3117 T4223 T4221 appos Perkin-Elmer,sequencer
R3118 T4224 T4221 punct ),sequencer
R3119 T4225 T4202 punct .,determined
R3120 T4226 T4227 det This,sequence
R3121 T4227 T4229 nsubjpass sequence,deposited
R3122 T4228 T4229 auxpass was,deposited
R3123 T4229 T4229 ROOT deposited,deposited
R3124 T4230 T4229 prep in,deposited
R3125 T4231 T4233 compound GenBank/EMBL/DDBJ,Bank
R3126 T4232 T4233 compound Data,Bank
R3127 T4233 T4230 pobj Bank,in
R3128 T4234 T4229 prep with,deposited
R3129 T4235 T4236 compound Accession,No
R3130 T4236 T4234 pobj No,with
R3131 T4237 T4229 punct .,deposited
R3132 T4238 T4238 ROOT AF339731,AF339731
R3133 T4239 T4238 punct .,AF339731

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4008 1145-1153 NN denotes AF339731
T4007 1141-1144 NNP denotes No.
T4006 1131-1140 NNP denotes Accession
T4005 1126-1130 IN denotes with
T4004 1121-1125 NNP denotes Bank
T4003 1116-1120 NNP denotes Data
T4002 1098-1115 NNP denotes GenBank/EMBL/DDBJ
T4001 1095-1097 IN denotes in
T4000 1085-1094 VB denotes deposited
T3999 1081-1084 VB denotes was
T3998 1072-1080 NN denotes sequence
T3997 1067-1071 DT denotes This
T3996 1064-1065 -RRB- denotes )
T3995 1052-1064 NN denotes Perkin-Elmer
T3994 1051-1052 -LRB- denotes (
T3993 1041-1050 NN denotes sequencer
T3992 1036-1040 NN denotes 373A
T3991 1033-1035 NN denotes PE
T3990 1031-1032 DT denotes a
T3989 1027-1030 CC denotes and
T3988 1025-1026 -RRB- denotes )
T3987 1013-1025 NN denotes Perkin-Elmer
T3986 1012-1013 -LRB- denotes (
T3985 1008-1011 NN denotes kit
T3984 999-1007 NN denotes reaction
T3983 993-998 JJ denotes ready
T3982 982-992 NN denotes sequencing
T3981 976-981 NN denotes cycle
T3980 965-975 NN denotes terminator
T3979 961-964 NN denotes dye
T3978 955-960 NNP denotes PRISM
T3977 951-954 NNP denotes ABI
T3976 947-950 DT denotes the
T3975 941-946 VB denotes using
T3974 930-940 VB denotes determined
T3973 926-929 VB denotes was
T3972 919-925 NN denotes region
T3971 910-918 NN denotes flanking
T3970 907-909 NN denotes 5′
T3969 902-906 NN denotes gene
T3968 893-901 NN denotes SerpinB2
T3967 886-892 JJ denotes murine
T3966 883-885 NN denotes bp
T3965 878-882 CD denotes 4480
T3964 874-877 DT denotes the
T3963 871-873 IN denotes of
T3962 862-870 NN denotes sequence
T3961 851-861 NN denotes nucleotide
T3960 847-850 DT denotes The
T3959 835-845 NN denotes sequencing
T3958 831-834 NN denotes DNA
T3957 827-830 CC denotes and
T3956 817-826 NN denotes digestion
T3955 810-816 NN denotes enzyme
T3954 798-809 NN denotes restriction
T3953 795-797 IN denotes by
T3952 786-794 VB denotes verified
T3951 781-785 VB denotes were
T3950 773-780 NN denotes inserts
T3949 763-772 VB denotes Subcloned
T3948 749-761 NN denotes orientations
T3947 740-748 JJ denotes opposite
T3946 737-739 IN denotes in
T3945 730-736 VB denotes cloned
T3944 728-729 -COMMA- denotes ,
T3943 720-728 NN denotes fragment
T3942 714-719 NN denotes EcoRI
T3941 706-713 NN denotes pDB9406
T3940 702-705 DT denotes the
T3939 699-701 IN denotes of
T3938 690-698 RB denotes upstream
T3937 678-689 RB denotes immediately
T3936 670-677 JJ denotes located
T3935 668-669 -COMMA- denotes ,
T3934 660-668 NN denotes fragment
T3933 652-659 JJ denotes genomic
T3932 646-651 NN denotes EcoRI
T3931 643-645 NN denotes kb
T3930 639-642 CD denotes 1.2
T3929 637-638 DT denotes a
T3928 629-636 VB denotes contain
T3927 618-628 NN denotes pDB9402-42
T3926 614-617 CC denotes and
T3925 603-613 NN denotes pDB9402-41
T3924 601-602 -COLON- denotes ;
T3923 597-601 NN denotes site
T3922 586-596 NN denotes initiation
T3921 572-585 NN denotes transcription
T3920 568-571 DT denotes the
T3919 559-567 VB denotes spanning
T3918 550-558 NN denotes fragment
T3917 542-549 JJ denotes genomic
T3916 531-541 NN denotes EcoRI/SpeI
T3915 528-530 NN denotes kb
T3914 524-527 CD denotes 4.4
T3913 522-523 DT denotes a
T3912 513-521 VB denotes contains
T3911 505-512 NN denotes pDB9406
T3910 497-504 NNP denotes Geneva.
T3909 494-496 IN denotes of
T3908 483-493 NNP denotes University
T3907 481-482 -COMMA- denotes ,
T3906 476-481 NNP denotes Belin
T3905 466-475 NNP denotes Dominique
T3904 462-465 NNP denotes Dr.
T3903 459-461 IN denotes by
T3902 450-458 VB denotes provided
T3901 443-449 RB denotes kindly
T3900 438-442 VB denotes were
T3899 436-437 -COMMA- denotes ,
T3898 430-436 NN denotes strain
T3897 424-429 NN denotes mouse
T3896 420-423 CD denotes 129
T3895 418-419 DT denotes a
T3894 413-417 IN denotes from
T3893 404-412 VB denotes prepared
T3892 396-403 NN denotes library
T3891 388-395 JJ denotes genomic
T3890 386-387 -RRB- denotes )
T3889 376-386 NN denotes Stratagene
T3888 375-376 -LRB- denotes (
T3887 368-374 NN denotes λFIXII
T3886 366-367 DT denotes a
T3885 361-365 IN denotes from
T3884 352-360 VB denotes isolated
T3883 348-351 NN denotes DNA
T3882 340-347 JJ denotes genomic
T3881 329-339 VB denotes containing
T3880 318-328 NN denotes pDB9402-42
T3879 314-317 CC denotes and
T3878 303-313 NN denotes pDB9402-41
T3877 301-302 -COMMA- denotes ,
T3876 294-301 NN denotes pDB9406
T3875 285-293 NN denotes Plasmids
T3874 274-283 NN denotes digestion
T3873 270-273 CD denotes III
T3872 258-269 NN denotes exonuclease
T3871 255-257 IN denotes by
T3870 244-254 VB denotes introduced
T3869 234-243 NN denotes deletions
T3868 223-233 VB denotes containing
T3867 212-222 NN denotes pDB9402-42
T3866 208-211 CC denotes and
T3865 197-207 NN denotes pDB9402-41
T3864 192-196 IN denotes from
T3863 183-191 VB denotes prepared
T3862 174-182 NN denotes plasmids
T3861 171-173 TO denotes to
T3860 162-170 NN denotes addition
T3859 159-161 IN denotes in
T3858 157-158 -COMMA- denotes ,
T3857 147-157 NN denotes pDB9402-42
T3856 143-146 CC denotes and
T3855 132-142 NN denotes pDB9402-41
T3854 130-131 -COMMA- denotes ,
T3853 123-130 NN denotes pDB9406
T3852 114-122 NN denotes plasmids
T3851 104-113 JJ denotes pUC-based
T3850 100-103 DT denotes the
T3849 89-99 VB denotes sequencing
T3848 86-88 IN denotes by
T3847 75-85 VB denotes determined
T3846 71-74 VB denotes was
T3845 62-70 NN denotes promoter
T3844 53-61 NN denotes SerpinB2
T3843 46-52 JJ denotes murine
T3842 42-45 DT denotes the
T3841 39-41 IN denotes of
T3840 30-38 NN denotes sequence
T3839 26-29 NN denotes DNA
T3838 22-25 DT denotes The
T3837 13-21 NN denotes Analysis
T3836 4-12 NN denotes Sequence
T3835 0-3 NN denotes DNA
R2778 T3837 T3835 arg1Of Analysis,DNA
R2779 T3837 T3836 arg1Of Analysis,Sequence
R2780 T3840 T3838 arg1Of sequence,The
R2781 T3840 T3839 arg1Of sequence,DNA
R2782 T3840 T3841 arg1Of sequence,of
R2783 T3840 T3846 arg1Of sequence,was
R2784 T3840 T3847 arg2Of sequence,determined
R2785 T3845 T3841 arg2Of promoter,of
R2786 T3845 T3842 arg1Of promoter,the
R2787 T3845 T3843 arg1Of promoter,murine
R2788 T3845 T3844 arg1Of promoter,SerpinB2
R2789 T3847 T3846 arg2Of determined,was
R2790 T3847 T3848 arg1Of determined,by
R2791 T3849 T3848 arg2Of sequencing,by
R2792 T3849 T3858 arg1Of sequencing,","
R2793 T3849 T3859 arg1Of sequencing,in
R2794 T3853 T3854 arg1Of pDB9406,","
R2795 T3854 T3856 arg1Of ",",and
R2796 T3855 T3854 arg2Of pDB9402-41,","
R2797 T3856 T3849 arg2Of and,sequencing
R2798 T3856 T3850 arg1Of and,the
R2799 T3856 T3851 arg1Of and,pUC-based
R2800 T3856 T3852 arg1Of and,plasmids
R2801 T3857 T3856 arg2Of pDB9402-42,and
R2803 T3860 T3861 arg1Of addition,to
R2804 T3862 T3861 arg2Of plasmids,to
R2805 T3862 T3863 arg2Of plasmids,prepared
R2806 T3863 T3864 arg1Of prepared,from
R2807 T3865 T3866 arg1Of pDB9402-41,and
R2808 T3866 T3864 arg2Of and,from
R2809 T3866 T3868 arg1Of and,containing
R2810 T3867 T3866 arg2Of pDB9402-42,and
R2811 T3869 T3868 arg2Of deletions,containing
R2812 T3869 T3870 arg2Of deletions,introduced
R2813 T3874 T3870 arg1Of digestion,introduced
R2814 T3874 T3871 arg2Of digestion,by
R2815 T3874 T3872 arg1Of digestion,exonuclease
R2816 T3874 T3873 arg1Of digestion,III
R2817 T3876 T3877 arg1Of pDB9406,","
R2818 T3877 T3879 arg1Of ",",and
R2819 T3878 T3877 arg2Of pDB9402-41,","
R2820 T3879 T3875 arg1Of and,Plasmids
R2821 T3879 T3881 arg1Of and,containing
R2822 T3879 T3900 arg1Of and,were
R2823 T3879 T3902 arg2Of and,provided
R2824 T3880 T3879 arg2Of pDB9402-42,and
R2825 T3883 T3881 arg2Of DNA,containing
R2826 T3883 T3882 arg1Of DNA,genomic
R2827 T3883 T3884 arg2Of DNA,isolated
R2828 T3884 T3885 arg1Of isolated,from
R2829 T3889 T3888 arg2Of Stratagene,(
R2830 T3890 T3888 arg3Of ),(
R2831 T3892 T3885 arg2Of library,from
R2832 T3892 T3886 arg1Of library,a
R2833 T3892 T3887 arg1Of library,λFIXII
R2834 T3892 T3888 arg1Of library,(
R2835 T3892 T3891 arg1Of library,genomic
R2836 T3892 T3893 arg2Of library,prepared
R2837 T3893 T3894 arg1Of prepared,from
R2838 T3898 T3894 arg2Of strain,from
R2839 T3898 T3895 arg1Of strain,a
R2840 T3898 T3896 arg1Of strain,129
R2841 T3898 T3897 arg1Of strain,mouse
R2842 T3902 T3899 arg1Of provided,","
R2843 T3902 T3900 arg2Of provided,were
R2844 T3902 T3901 arg1Of provided,kindly
R2845 T3902 T3907 arg1Of provided,","
R2846 T3906 T3902 arg1Of Belin,provided
R2847 T3906 T3903 arg2Of Belin,by
R2848 T3906 T3904 arg1Of Belin,Dr.
R2849 T3906 T3905 arg1Of Belin,Dominique
R2850 T3908 T3909 arg1Of University,of
R2851 T3910 T3909 arg2Of Geneva.,of
R2852 T3911 T3908 arg1Of pDB9406,University
R2853 T3911 T3912 arg1Of pDB9406,contains
R2854 T3912 T3907 arg2Of contains,","
R2855 T3912 T3924 arg1Of contains,;
R2856 T3918 T3912 arg2Of fragment,contains
R2857 T3918 T3913 arg1Of fragment,a
R2858 T3918 T3914 arg1Of fragment,4.4
R2859 T3918 T3915 arg1Of fragment,kb
R2860 T3918 T3916 arg1Of fragment,EcoRI/SpeI
R2861 T3918 T3917 arg1Of fragment,genomic
R2862 T3918 T3919 arg1Of fragment,spanning
R2863 T3923 T3919 arg2Of site,spanning
R2864 T3923 T3920 arg1Of site,the
R2865 T3923 T3921 arg1Of site,transcription
R2866 T3923 T3922 arg1Of site,initiation
R2867 T3925 T3926 arg1Of pDB9402-41,and
R2868 T3926 T3928 arg1Of and,contain
R2869 T3927 T3926 arg2Of pDB9402-42,and
R2870 T3928 T3924 arg2Of contain,;
R2871 T3934 T3928 arg2Of fragment,contain
R2872 T3934 T3929 arg1Of fragment,a
R2873 T3934 T3930 arg1Of fragment,1.2
R2874 T3934 T3931 arg1Of fragment,kb
R2875 T3934 T3932 arg1Of fragment,EcoRI
R2876 T3934 T3933 arg1Of fragment,genomic
R2877 T3934 T3935 arg1Of fragment,","
R2878 T3934 T3936 arg1Of fragment,located
R2879 T3934 T3944 arg1Of fragment,","
R2880 T3934 T3945 arg2Of fragment,cloned
R2881 T3936 T3938 arg1Of located,upstream
R2882 T3938 T3937 arg1Of upstream,immediately
R2883 T3938 T3939 arg1Of upstream,of
R2884 T3943 T3939 arg2Of fragment,of
R2885 T3943 T3940 arg1Of fragment,the
R2886 T3943 T3941 arg1Of fragment,pDB9406
R2887 T3943 T3942 arg1Of fragment,EcoRI
R2888 T3945 T3946 arg1Of cloned,in
R2889 T3948 T3946 arg2Of orientations,in
R2890 T3948 T3947 arg1Of orientations,opposite
R2891 T3950 T3949 arg2Of inserts,Subcloned
R2892 T3950 T3951 arg1Of inserts,were
R2893 T3950 T3952 arg2Of inserts,verified
R2894 T3952 T3951 arg2Of verified,were
R2895 T3956 T3954 arg1Of digestion,restriction
R2896 T3956 T3955 arg1Of digestion,enzyme
R2897 T3956 T3957 arg1Of digestion,and
R2898 T3957 T3952 arg1Of and,verified
R2899 T3957 T3953 arg2Of and,by
R2900 T3959 T3957 arg2Of sequencing,and
R2901 T3959 T3958 arg1Of sequencing,DNA
R2902 T3962 T3960 arg1Of sequence,The
R2903 T3962 T3961 arg1Of sequence,nucleotide
R2904 T3962 T3963 arg1Of sequence,of
R2905 T3962 T3973 arg1Of sequence,was
R2906 T3962 T3974 arg2Of sequence,determined
R2907 T3972 T3963 arg2Of region,of
R2908 T3972 T3964 arg1Of region,the
R2909 T3972 T3965 arg1Of region,4480
R2910 T3972 T3966 arg1Of region,bp
R2911 T3972 T3967 arg1Of region,murine
R2912 T3972 T3968 arg1Of region,SerpinB2
R2913 T3972 T3969 arg1Of region,gene
R2914 T3972 T3970 arg1Of region,5′
R2915 T3972 T3971 arg1Of region,flanking
R2916 T3974 T3973 arg2Of determined,was
R2917 T3975 T3974 arg3Of using,determined
R2918 T3978 T3977 arg1Of PRISM,ABI
R2919 T3985 T3976 arg1Of kit,the
R2920 T3985 T3978 arg1Of kit,PRISM
R2921 T3985 T3979 arg1Of kit,dye
R2922 T3985 T3980 arg1Of kit,terminator
R2923 T3985 T3981 arg1Of kit,cycle
R2924 T3985 T3982 arg1Of kit,sequencing
R2925 T3985 T3983 arg1Of kit,ready
R2926 T3985 T3984 arg1Of kit,reaction
R2927 T3985 T3986 arg1Of kit,(
R2928 T3985 T3989 arg1Of kit,and
R2929 T3987 T3986 arg2Of Perkin-Elmer,(
R2930 T3988 T3986 arg3Of ),(
R2931 T3989 T3975 arg2Of and,using
R2932 T3993 T3989 arg2Of sequencer,and
R2933 T3993 T3990 arg1Of sequencer,a
R2934 T3993 T3991 arg1Of sequencer,PE
R2935 T3993 T3992 arg1Of sequencer,373A
R2936 T3993 T3994 arg1Of sequencer,(
R2937 T3995 T3994 arg2Of Perkin-Elmer,(
R2938 T3996 T3994 arg3Of ),(
R2939 T3998 T3997 arg1Of sequence,This
R2940 T3998 T3999 arg1Of sequence,was
R2941 T3998 T4000 arg2Of sequence,deposited
R2942 T4000 T3999 arg2Of deposited,was
R2943 T4000 T4001 arg1Of deposited,in
R2944 T4007 T4002 arg1Of No.,GenBank/EMBL/DDBJ
R2945 T4007 T4003 arg1Of No.,Data
R2946 T4007 T4004 arg1Of No.,Bank
R2947 T4007 T4005 arg1Of No.,with
R2948 T4007 T4006 arg1Of No.,Accession
R2949 T4008 T4001 arg2Of AF339731,in
R2950 T4008 T4007 arg1Of AF339731,No.
R2802 T3860 T3859 arg2Of addition,in

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3825 893-901 Protein denotes SerpinB2
T3824 258-273 Protein denotes exonuclease III
T3823 53-61 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4013 893-901 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T4012 53-61 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T3828 572-585 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3827 817-826 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion
T3826 274-283 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion

sentences

Id Subject Object Predicate Lexical cue
T3816 1067-1154 Sentence denotes This sequence was deposited in GenBank/EMBL/DDBJ Data Bank with Accession No. AF339731.
T3815 847-1066 Sentence denotes The nucleotide sequence of the 4480 bp murine SerpinB2 gene 5′ flanking region was determined using the ABI PRISM dye terminator cycle sequencing ready reaction kit (Perkin-Elmer) and a PE 373A sequencer (Perkin-Elmer).
T3814 763-846 Sentence denotes Subcloned inserts were verified by restriction enzyme digestion and DNA sequencing.
T3813 285-762 Sentence denotes Plasmids pDB9406, pDB9402-41 and pDB9402-42 containing genomic DNA isolated from a λFIXII (Stratagene) genomic library prepared from a 129 mouse strain, were kindly provided by Dr. Dominique Belin, University of Geneva. pDB9406 contains a 4.4 kb EcoRI/SpeI genomic fragment spanning the transcription initiation site; pDB9402-41 and pDB9402-42 contain a 1.2 kb EcoRI genomic fragment, located immediately upstream of the pDB9406 EcoRI fragment, cloned in opposite orientations.
T3812 22-284 Sentence denotes The DNA sequence of the murine SerpinB2 promoter was determined by sequencing the pUC-based plasmids pDB9406, pDB9402-41 and pDB9402-42, in addition to plasmids prepared from pDB9402-41 and pDB9402-42 containing deletions introduced by exonuclease III digestion.
T3811 0-21 Sentence denotes DNA Sequence Analysis
T45 0-21 Sentence denotes DNA Sequence Analysis
T46 22-284 Sentence denotes The DNA sequence of the murine SerpinB2 promoter was determined by sequencing the pUC-based plasmids pDB9406, pDB9402-41 and pDB9402-42, in addition to plasmids prepared from pDB9402-41 and pDB9402-42 containing deletions introduced by exonuclease III digestion.
T47 285-762 Sentence denotes Plasmids pDB9406, pDB9402-41 and pDB9402-42 containing genomic DNA isolated from a λFIXII (Stratagene) genomic library prepared from a 129 mouse strain, were kindly provided by Dr. Dominique Belin, University of Geneva. pDB9406 contains a 4.4 kb EcoRI/SpeI genomic fragment spanning the transcription initiation site; pDB9402-41 and pDB9402-42 contain a 1.2 kb EcoRI genomic fragment, located immediately upstream of the pDB9406 EcoRI fragment, cloned in opposite orientations.
T48 763-846 Sentence denotes Subcloned inserts were verified by restriction enzyme digestion and DNA sequencing.
T49 847-1066 Sentence denotes The nucleotide sequence of the 4480 bp murine SerpinB2 gene 5′ flanking region was determined using the ABI PRISM dye terminator cycle sequencing ready reaction kit (Perkin-Elmer) and a PE 373A sequencer (Perkin-Elmer).
T50 1067-1144 Sentence denotes This sequence was deposited in GenBank/EMBL/DDBJ Data Bank with Accession No.
T51 1145-1154 Sentence denotes AF339731.

simple1

Id Subject Object Predicate Lexical cue
T3834 893-901 Protein denotes SerpinB2
T3833 258-273 Protein denotes exonuclease III
T3832 53-61 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4011 893-901 Protein denotes SerpinB2
T4010 258-273 Protein denotes exonuclease III
T4009 53-61 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4022 893-901 Protein denotes SerpinB2
T4021 258-273 Protein denotes exonuclease III
T4020 53-61 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T4016 893-901 Protein denotes SerpinB2
T4015 258-273 Protein denotes exonuclease III
T4014 53-61 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4057 893-901 Protein denotes SerpinB2
T4056 0-3 Entity denotes DNA
T4055 1098-1140 Protein denotes GenBank/EMBL/DDBJ Data Bank with Accession
T4054 340-436 Entity denotes genomic DNA isolated from a λFIXII (Stratagene) genomic library prepared from a 129 mouse strain
T4053 714-729 Entity denotes EcoRI fragment,
T4052 1101-1105 Protein denotes Bank
T4051 851-861 Entity denotes nucleotide
T4050 847-909 Protein denotes The nucleotide sequence of the 4480 bp murine SerpinB2 gene 5′
T4049 123-126 Entity denotes pDB
T4048 26-29 Entity denotes DNA
T4047 798-826 Protein denotes restriction enzyme digestion
T4046 947-960 Protein denotes the ABI PRISM
T4045 1098-1140 Protein denotes GenBank/EMBL/DDBJ Data Bank with Accession
T4044 53-61 Protein denotes SerpinB2
T4043 568-601 Entity denotes the transcription initiation site
T4042 1031-1035 Protein denotes a PE
T4041 646-649 Protein denotes Eco
T4040 531-536 Entity denotes EcoRI
T4039 39-70 Entity denotes of the murine SerpinB2 promoter
T4038 100-105 Entity denotes the p
T4037 258-283 Protein denotes exonuclease III digestion
R2951 T4039 T4044 partOf of the murine SerpinB2 promoter,SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T4029 951-960 Protein denotes ABI PRISM
T4028 706-728 Protein denotes pDB9406 EcoRI fragment
T4027 646-651 Protein denotes EcoRI
T4026 537-541 Protein denotes SpeI
T4025 531-536 Protein denotes EcoRI
T4024 258-273 Protein denotes exonuclease III
T4023 46-70 Protein denotes murine SerpinB2 promoter

testone

Id Subject Object Predicate Lexical cue
T3803 258-273 Protein denotes exonuclease III
T3802 53-61 Protein denotes SerpinB2
T3804 893-901 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T3810 893-901 Protein denotes SerpinB2
T3809 258-273 Protein denotes exonuclease III
T3808 53-61 Protein denotes SerpinB2
T3807 893-901 Protein denotes SerpinB2
T3806 258-273 Protein denotes exonuclease III
T3805 53-61 Protein denotes SerpinB2