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PMC:3589482 / 551-752 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 66-74 NN denotes promoter
T855 57-65 CD denotes SerpinB2
T854 43-56 JJ denotes LPS-regulated
T853 39-42 DT denotes the
T852 35-38 VB denotes map
T851 32-34 TO denotes To
T850 30-31 . denotes .
T849 19-30 NNS denotes macrophages
T848 12-18 JJ denotes murine
T847 9-11 IN denotes in
T846 5-8 NNS denotes hrs
T845 2-4 CD denotes 24
T880 190-197 JJ denotes several
T879 186-189 CC denotes and
T878 181-185 NN denotes gene
T877 172-180 NNP denotes SerpinB2
T876 165-171 NN denotes murine
T875 161-164 DT denotes the
T874 158-160 IN denotes of
T873 151-157 NN denotes region
T872 142-150 VBG denotes flanking
T871 141-142 : denotes -
T870 140-141 '' denotes '
T869 139-140 CD denotes 5
T868 136-138 NN denotes kb
T867 134-135 CD denotes 5
T866 133-134 NN denotes ∼
T865 129-132 DT denotes the
T864 126-128 IN denotes by
T863 119-125 VBN denotes driven
T862 108-118 NNS denotes constructs
T861 99-107 NN denotes reporter
T860 87-98 VBD denotes transfected
T859 84-86 PRP denotes we
T858 82-83 , denotes ,
T857 75-82 NNS denotes regions
R432 T845 T846 nummod 24,hrs
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected
R448 T861 T862 compound reporter,constructs
R449 T862 T860 dobj constructs,transfected
R450 T863 T862 acl driven,constructs
R451 T864 T863 agent by,driven
R452 T865 T873 det the,region
R453 T866 T868 nmod ∼,kb
R454 T867 T866 nummod 5,∼
R455 T868 T872 meta kb,flanking
R456 T869 T868 nummod 5,kb
R457 T870 T869 punct ',5
R458 T871 T872 punct -,flanking
R459 T872 T873 amod flanking,region
R460 T873 T864 pobj region,by
R461 T874 T873 prep of,region
R462 T875 T878 det the,gene
R463 T876 T878 compound murine,gene
R464 T877 T878 compound SerpinB2,gene
R465 T878 T874 pobj gene,of
R466 T879 T878 cc and,gene

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 2-4 CD denotes 24
T337 190-197 JJ denotes several
T336 186-189 CC denotes and
T335 181-185 NN denotes gene
T334 172-180 NN denotes SerpinB2
T333 165-171 JJ denotes murine
T332 161-164 DT denotes the
T331 158-160 IN denotes of
T330 151-157 NN denotes region
T329 139-150 JJ denotes 5'-flanking
T328 136-138 NN denotes kb
T327 133-135 CD denotes ∼5
T326 129-132 DT denotes the
T325 126-128 IN denotes by
T324 119-125 VB denotes driven
T323 108-118 NN denotes constructs
T322 99-107 NN denotes reporter
T321 87-98 VB denotes transfected
T320 84-86 PRP denotes we
T319 82-83 -COMMA- denotes ,
T318 75-82 NN denotes regions
T317 66-74 NN denotes promoter
T316 57-65 NN denotes SerpinB2
T315 43-56 JJ denotes LPS-regulated
T314 39-42 DT denotes the
T313 35-38 VB denotes map
T312 32-34 TO denotes To
T311 19-30 NN denotes macrophages
T310 12-18 JJ denotes murine
T309 9-11 IN denotes in
T308 5-8 NN denotes hrs
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","
R133 T323 T321 arg2Of constructs,transfected
R134 T323 T322 arg1Of constructs,reporter
R135 T323 T324 arg2Of constructs,driven
R136 T330 T324 arg1Of region,driven
R137 T330 T325 arg2Of region,by
R138 T330 T326 arg1Of region,the
R139 T330 T327 arg1Of region,∼5
R140 T330 T328 arg1Of region,kb
R141 T330 T329 arg1Of region,5'-flanking
R142 T330 T331 arg1Of region,of
R144 T335 T332 arg1Of gene,the
R145 T335 T333 arg1Of gene,murine
R146 T335 T334 arg1Of gene,SerpinB2
R147 T335 T336 arg1Of gene,and
R148 T336 T331 arg2Of and,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T165 57-65 Protein denotes SerpinB2
T166 172-180 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T532 57-65 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T533 172-180 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

simple1

Id Subject Object Predicate Lexical cue
T218 57-65 Protein denotes SerpinB2
T219 172-180 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T500 57-65 Protein denotes SerpinB2
T499 172-180 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T609 172-180 Protein denotes SerpinB2
T610 57-65 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T575 172-180 Protein denotes SerpinB2
T576 57-65 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 2-30 Localization denotes 24 hrs in murine macrophages
T753 172-180 Protein denotes SerpinB2
T719 2-30 Protein denotes 24 hrs in murine macrophages
T720 57-65 Protein denotes SerpinB2
T724 12-30 Entity denotes murine macrophages
T729 39-83 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T741 43-56 Entity denotes LPS-regulated
T743 158-185 Protein denotes of the murine SerpinB2 gene
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T649 165-185 Protein denotes murine SerpinB2 gene
T648 57-74 Protein denotes SerpinB2 promoter

testone

Id Subject Object Predicate Lexical cue
T29 172-180 Protein denotes SerpinB2
T28 57-65 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T80 172-180 Protein denotes SerpinB2
T79 57-65 Protein denotes SerpinB2
T58 172-180 Protein denotes SerpinB2
T57 57-65 Protein denotes SerpinB2