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PMC:3589482 / 543-796 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 74-82 NN denotes promoter
T855 65-73 CD denotes SerpinB2
T854 51-64 JJ denotes LPS-regulated
T853 47-50 DT denotes the
T852 43-46 VB denotes map
T851 40-42 TO denotes To
T850 38-39 . denotes .
T849 27-38 NNS denotes macrophages
T848 20-26 JJ denotes murine
T847 17-19 IN denotes in
T846 13-16 NNS denotes hrs
T845 10-12 CD denotes 24
T844 7-9 IN denotes of
T843 0-6 NN denotes period
T887 248-250 IN denotes In
T886 246-247 . denotes .
T885 235-246 NNS denotes macrophages
T884 228-234 JJ denotes murine
T883 223-227 IN denotes into
T882 215-222 NNS denotes mutants
T881 206-214 NN denotes deletion
T880 198-205 JJ denotes several
T879 194-197 CC denotes and
T878 189-193 NN denotes gene
T877 180-188 NNP denotes SerpinB2
T876 173-179 NN denotes murine
T875 169-172 DT denotes the
T874 166-168 IN denotes of
T873 159-165 NN denotes region
T872 150-158 VBG denotes flanking
T871 149-150 : denotes -
T870 148-149 '' denotes '
T869 147-148 CD denotes 5
T868 144-146 NN denotes kb
T867 142-143 CD denotes 5
T866 141-142 NN denotes ∼
T865 137-140 DT denotes the
T864 134-136 IN denotes by
T863 127-133 VBN denotes driven
T862 116-126 NNS denotes constructs
T861 107-115 NN denotes reporter
T860 95-106 VBD denotes transfected
T859 92-94 PRP denotes we
T858 90-91 , denotes ,
T857 83-90 NNS denotes regions
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected
R448 T861 T862 compound reporter,constructs
R449 T862 T860 dobj constructs,transfected
R450 T863 T862 acl driven,constructs
R451 T864 T863 agent by,driven
R452 T865 T873 det the,region
R453 T866 T868 nmod ∼,kb
R454 T867 T866 nummod 5,∼
R455 T868 T872 meta kb,flanking
R456 T869 T868 nummod 5,kb
R457 T870 T869 punct ',5
R458 T871 T872 punct -,flanking
R459 T872 T873 amod flanking,region
R460 T873 T864 pobj region,by
R461 T874 T873 prep of,region
R462 T875 T878 det the,gene
R463 T876 T878 compound murine,gene
R464 T877 T878 compound SerpinB2,gene
R465 T878 T874 pobj gene,of
R466 T879 T878 cc and,gene
R467 T880 T882 amod several,mutants
R468 T881 T882 compound deletion,mutants
R469 T882 T878 conj mutants,gene
R470 T883 T863 prep into,driven
R471 T884 T885 amod murine,macrophages
R472 T885 T883 pobj macrophages,into
R473 T886 T860 punct .,transfected

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 10-12 CD denotes 24
T306 7-9 IN denotes of
T305 0-6 NN denotes period
T343 248-250 IN denotes In
T342 235-246 NN denotes macrophages
T341 228-234 JJ denotes murine
T340 223-227 IN denotes into
T339 215-222 NN denotes mutants
T338 206-214 NN denotes deletion
T337 198-205 JJ denotes several
T336 194-197 CC denotes and
T335 189-193 NN denotes gene
T334 180-188 NN denotes SerpinB2
T333 173-179 JJ denotes murine
T332 169-172 DT denotes the
T331 166-168 IN denotes of
T330 159-165 NN denotes region
T329 147-158 JJ denotes 5'-flanking
T328 144-146 NN denotes kb
T327 141-143 CD denotes ∼5
T326 137-140 DT denotes the
T325 134-136 IN denotes by
T324 127-133 VB denotes driven
T323 116-126 NN denotes constructs
T322 107-115 NN denotes reporter
T321 95-106 VB denotes transfected
T320 92-94 PRP denotes we
T319 90-91 -COMMA- denotes ,
T318 83-90 NN denotes regions
T317 74-82 NN denotes promoter
T316 65-73 NN denotes SerpinB2
T315 51-64 JJ denotes LPS-regulated
T314 47-50 DT denotes the
T313 43-46 VB denotes map
T312 40-42 TO denotes To
T311 27-38 NN denotes macrophages
T310 20-26 JJ denotes murine
T309 17-19 IN denotes in
T308 13-16 NN denotes hrs
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","
R133 T323 T321 arg2Of constructs,transfected
R134 T323 T322 arg1Of constructs,reporter
R135 T323 T324 arg2Of constructs,driven
R136 T330 T324 arg1Of region,driven
R137 T330 T325 arg2Of region,by
R138 T330 T326 arg1Of region,the
R139 T330 T327 arg1Of region,∼5
R140 T330 T328 arg1Of region,kb
R141 T330 T329 arg1Of region,5'-flanking
R142 T330 T331 arg1Of region,of
R143 T330 T340 arg1Of region,into
R144 T335 T332 arg1Of gene,the
R145 T335 T333 arg1Of gene,murine
R146 T335 T334 arg1Of gene,SerpinB2
R147 T335 T336 arg1Of gene,and
R148 T336 T331 arg2Of and,of
R149 T339 T336 arg2Of mutants,and
R150 T339 T337 arg1Of mutants,several
R151 T339 T338 arg1Of mutants,deletion
R152 T342 T340 arg2Of macrophages,into
R153 T342 T341 arg1Of macrophages,murine

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T165 65-73 Protein denotes SerpinB2
T166 180-188 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T532 65-73 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T533 180-188 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T102 40-247 Sentence denotes To map the LPS-regulated SerpinB2 promoter regions, we transfected reporter constructs driven by the ∼5 kb 5'-flanking region of the murine SerpinB2 gene and several deletion mutants into murine macrophages.
T6 40-247 Sentence denotes To map the LPS-regulated SerpinB2 promoter regions, we transfected reporter constructs driven by the ∼5 kb 5'-flanking region of the murine SerpinB2 gene and several deletion mutants into murine macrophages.

simple1

Id Subject Object Predicate Lexical cue
T218 65-73 Protein denotes SerpinB2
T219 180-188 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T500 65-73 Protein denotes SerpinB2
T499 180-188 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T609 180-188 Protein denotes SerpinB2
T610 65-73 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T575 180-188 Protein denotes SerpinB2
T576 65-73 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 10-38 Localization denotes 24 hrs in murine macrophages
T753 180-188 Protein denotes SerpinB2
T719 10-38 Protein denotes 24 hrs in murine macrophages
T720 65-73 Protein denotes SerpinB2
T724 20-38 Entity denotes murine macrophages
T726 228-246 Entity denotes murine macrophages
T729 47-91 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T741 51-64 Entity denotes LPS-regulated
T743 166-193 Protein denotes of the murine SerpinB2 gene
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T649 173-193 Protein denotes murine SerpinB2 gene
T648 65-82 Protein denotes SerpinB2 promoter

testone

Id Subject Object Predicate Lexical cue
T29 180-188 Protein denotes SerpinB2
T28 65-73 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T80 180-188 Protein denotes SerpinB2
T79 65-73 Protein denotes SerpinB2
T58 180-188 Protein denotes SerpinB2
T57 65-73 Protein denotes SerpinB2