PMC:3589482 / 5398-6702
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3561 | 1303-1304 | . | denotes | . |
| T3560 | 1298-1303 | NNP | denotes | Sigma |
| T3559 | 1293-1297 | IN | denotes | from |
| T3558 | 1284-1292 | VBN | denotes | obtained |
| T3557 | 1280-1283 | VBD | denotes | was |
| T3556 | 1278-1279 | -RRB- | denotes | ) |
| T3555 | 1273-1278 | NNP | denotes | Re595 |
| T3554 | 1266-1272 | NNP | denotes | Strain |
| T3553 | 1256-1265 | NN | denotes | minnesota |
| T3552 | 1245-1255 | NN | denotes | Salmonella |
| T3551 | 1244-1245 | -LRB- | denotes | ( |
| T3550 | 1242-1243 | -RRB- | denotes | ) |
| T3549 | 1239-1242 | NNP | denotes | LPS |
| T3548 | 1238-1239 | -LRB- | denotes | ( |
| T3547 | 1219-1237 | NN | denotes | lipopolysaccharide |
| T3546 | 1209-1218 | JJ | denotes | Bacterial |
| T3545 | 1207-1208 | . | denotes | . |
| T3544 | 1206-1207 | -RRB- | denotes | ) |
| T3543 | 1201-1206 | NNP | denotes | Lonza |
| T3542 | 1200-1201 | -LRB- | denotes | ( |
| T3541 | 1196-1199 | NNP | denotes | Kit |
| T3540 | 1186-1195 | NNP | denotes | Detection |
| T3539 | 1176-1185 | NNP | denotes | MycoAlert |
| T3538 | 1172-1175 | DT | denotes | the |
| T3537 | 1168-1171 | CC | denotes | and |
| T3536 | 1166-1167 | -RRB- | denotes | ) |
| T3535 | 1161-1166 | NNP | denotes | Sigma |
| T3534 | 1160-1161 | -LRB- | denotes | ( |
| T3533 | 1154-1159 | CD | denotes | 33258 |
| T3532 | 1148-1153 | VB | denotes | stain |
| T3531 | 1140-1147 | NNP | denotes | Hoechst |
| T3530 | 1134-1139 | VBG | denotes | using |
| T3529 | 1125-1133 | NN | denotes | staining |
| T3528 | 1117-1124 | JJ | denotes | nuclear |
| T3527 | 1114-1116 | IN | denotes | by |
| T3526 | 1104-1113 | NN | denotes | infection |
| T3525 | 1093-1103 | NNP | denotes | Mycoplasma |
| T3524 | 1085-1092 | VB | denotes | exclude |
| T3523 | 1082-1084 | TO | denotes | to |
| T3522 | 1074-1081 | VBN | denotes | checked |
| T3521 | 1064-1073 | RB | denotes | routinely |
| T3520 | 1059-1063 | VBD | denotes | were |
| T3519 | 1050-1058 | NNS | denotes | cultures |
| T3518 | 1046-1049 | DT | denotes | All |
| T3517 | 1044-1045 | . | denotes | . |
| T3516 | 1038-1044 | NN | denotes | method |
| T3515 | 1028-1037 | NN | denotes | exclusion |
| T3514 | 1024-1027 | NN | denotes | dye |
| T3513 | 1022-1023 | -RRB- | denotes | ) |
| T3512 | 1017-1022 | NNP | denotes | Sigma |
| T3511 | 1016-1017 | -LRB- | denotes | ( |
| T3477 | 800-805 | NNS | denotes | media |
| T3476 | 791-799 | CD | denotes | DMEM/F12 |
| T3475 | 789-790 | NN | denotes | % |
| T3474 | 787-789 | CD | denotes | 50 |
| T3473 | 784-786 | IN | denotes | in |
| T3472 | 773-783 | VBD | denotes | maintained |
| T3471 | 769-772 | CC | denotes | and |
| T3470 | 767-768 | , | denotes | , |
| T3469 | 762-767 | RB | denotes | later |
| T3468 | 757-761 | NNS | denotes | days |
| T3467 | 755-756 | CD | denotes | 5 |
| T3466 | 753-754 | CD | denotes | 3 |
| T3465 | 746-752 | NN | denotes | lavage |
| T3464 | 735-745 | JJ | denotes | peritoneal |
| T3463 | 732-734 | IN | denotes | by |
| T3462 | 723-731 | VBN | denotes | followed |
| T3461 | 717-722 | NN | denotes | broth |
| T3460 | 702-716 | NN | denotes | thioglycollate |
| T3459 | 700-701 | NN | denotes | % |
| T3458 | 699-700 | CD | denotes | 3 |
| T3457 | 694-698 | IN | denotes | with |
| T3456 | 689-693 | NNS | denotes | mice |
| T3455 | 681-688 | NNP | denotes | C57BL/6 |
| T3454 | 671-680 | VBG | denotes | injecting |
| T3453 | 668-670 | IN | denotes | by |
| T3452 | 659-667 | VBN | denotes | obtained |
| T3451 | 654-658 | VBD | denotes | were |
| T3450 | 642-653 | NNS | denotes | macrophages |
| T3449 | 631-641 | JJ | denotes | peritoneal |
| T3448 | 623-630 | JJ | denotes | Primary |
| T3447 | 621-622 | . | denotes | . |
| T3446 | 620-621 | -RRB- | denotes | ) |
| T3445 | 613-620 | NNP | denotes | Cellgro |
| T3444 | 612-613 | -LRB- | denotes | ( |
| T3443 | 603-611 | NN | denotes | solution |
| T3442 | 569-602 | JJ | denotes | penicillin/streptomycin/glutamate |
| T3441 | 567-568 | NN | denotes | % |
| T3440 | 566-567 | CD | denotes | 1 |
| T3439 | 562-565 | CC | denotes | and |
| T3438 | 556-561 | NN | denotes | serum |
| T3437 | 549-555 | JJ | denotes | bovine |
| T3436 | 543-548 | JJ | denotes | fetal |
| T3435 | 541-542 | NN | denotes | % |
| T3434 | 539-541 | CD | denotes | 10 |
| T3433 | 534-538 | IN | denotes | with |
| T3432 | 521-533 | VBN | denotes | supplemented |
| T3431 | 519-520 | -RRB- | denotes | ) |
| T3430 | 509-519 | NNP | denotes | Invitrogen |
| T3429 | 508-509 | -LRB- | denotes | ( |
| T3428 | 501-507 | NN | denotes | medium |
| T3427 | 498-500 | POS | denotes | 's |
| T3426 | 493-498 | NNP | denotes | Eagle |
| T3425 | 484-492 | VBN | denotes | modified |
| T3424 | 481-483 | POS | denotes | 's |
| T3423 | 473-481 | NNP | denotes | Dulbecco |
| T3422 | 470-472 | IN | denotes | in |
| T3421 | 464-469 | VBN | denotes | grown |
| T3420 | 459-463 | VBD | denotes | were |
| T3419 | 457-458 | NNP | denotes | ] |
| T3418 | 455-457 | CD | denotes | 34 |
| T3417 | 454-455 | NNP | denotes | [ |
| T3416 | 452-453 | -RRB- | denotes | ) |
| T3415 | 448-452 | NNS | denotes | MEFs |
| T3414 | 447-448 | -LRB- | denotes | ( |
| T3413 | 435-446 | NNS | denotes | fibroblasts |
| T3412 | 425-434 | JJ | denotes | embryonic |
| T3411 | 419-424 | NN | denotes | mouse |
| T3410 | 417-418 | -RRB- | denotes | ) |
| T3409 | 416-417 | NN | denotes | − |
| T3408 | 415-416 | CD | denotes | / |
| T3407 | 414-415 | VBD | denotes | − |
| T3406 | 409-414 | NNP | denotes | Cebpb |
| T3405 | 408-409 | -LRB- | denotes | ( |
| T3404 | 399-407 | NN | denotes | knockout |
| T3403 | 395-398 | CC | denotes | and |
| T3402 | 393-394 | -RRB- | denotes | ) |
| T3401 | 392-393 | NNP | denotes | + |
| T3400 | 391-392 | NNP | denotes | / |
| T3399 | 390-391 | NNP | denotes | + |
| T3398 | 385-390 | NNP | denotes | Cebpb |
| T3397 | 384-385 | -LRB- | denotes | ( |
| T3396 | 374-383 | NNP | denotes | Wild-type |
| T3395 | 371-373 | NNP | denotes | C. |
| T3394 | 370-371 | NN | denotes | ° |
| T3393 | 368-370 | CD | denotes | 37 |
| T3392 | 365-367 | IN | denotes | at |
| T3391 | 354-364 | NN | denotes | atmosphere |
| T3390 | 350-353 | NN | denotes | air |
| T3389 | 339-349 | JJ | denotes | humidified |
| T3388 | 337-338 | NN | denotes | % |
| T3387 | 335-337 | CD | denotes | 95 |
| T3386 | 331-334 | CC | denotes | and |
| T3385 | 327-330 | CD | denotes | CO2 |
| T3384 | 325-326 | NN | denotes | % |
| T3383 | 324-325 | CD | denotes | 5 |
| T3382 | 321-323 | IN | denotes | in |
| T3381 | 319-320 | , | denotes | , |
| T3380 | 308-319 | NN | denotes | bicarbonate |
| T3379 | 301-307 | NN | denotes | sodium |
| T3378 | 298-300 | NN | denotes | mM |
| T3377 | 295-297 | CD | denotes | 25 |
| T3376 | 291-294 | CC | denotes | and |
| T3375 | 289-290 | -RRB- | denotes | ) |
| T3374 | 284-289 | NNS | denotes | HEPES |
| T3373 | 283-284 | -LRB- | denotes | ( |
| T3372 | 278-282 | NN | denotes | acid |
| T3371 | 268-277 | JJ | denotes | sulphonic |
| T3370 | 230-267 | NNP | denotes | N-2-hydroxyethylpiperazine-N-2-ethane |
| T3369 | 227-229 | NNP | denotes | mM |
| T3368 | 224-226 | CD | denotes | 25 |
| T3367 | 222-223 | , | denotes | , |
| T3366 | 210-222 | NN | denotes | streptomycin |
| T3365 | 207-209 | NN | denotes | ml |
| T3364 | 206-207 | NN | denotes | / |
| T3363 | 204-206 | NN | denotes | µg |
| T3362 | 200-203 | CD | denotes | 100 |
| T3361 | 198-199 | , | denotes | , |
| T3360 | 188-198 | NN | denotes | penicillin |
| T3359 | 185-187 | NN | denotes | ml |
| T3358 | 184-185 | NN | denotes | / |
| T3357 | 182-184 | NN | denotes | µg |
| T3356 | 178-181 | CD | denotes | 200 |
| T3355 | 176-177 | , | denotes | , |
| T3354 | 175-176 | -RRB- | denotes | ) |
| T3353 | 163-175 | NNP | denotes | BioWhittaker |
| T3352 | 162-163 | -LRB- | denotes | ( |
| T3351 | 154-161 | NN | denotes | supreme |
| T3350 | 148-153 | NN | denotes | serum |
| T3349 | 146-147 | NN | denotes | % |
| T3348 | 144-146 | CD | denotes | 10 |
| T3347 | 142-143 | , | denotes | , |
| T3346 | 141-142 | -RRB- | denotes | ) |
| T3345 | 138-141 | NNP | denotes | BRL |
| T3344 | 132-137 | NNP | denotes | Gibco |
| T3343 | 131-132 | -LRB- | denotes | ( |
| T3342 | 119-130 | NNP | denotes | L-glutamine |
| T3341 | 116-118 | NNP | denotes | mM |
| T3340 | 114-115 | CD | denotes | 2 |
| T3339 | 109-113 | IN | denotes | with |
| T3338 | 96-108 | VBN | denotes | supplemented |
| T3337 | 94-95 | , | denotes | , |
| T3336 | 93-94 | -RRB- | denotes | ) |
| T3335 | 90-93 | NNP | denotes | BRL |
| T3334 | 84-89 | NNP | denotes | Gibco |
| T3333 | 83-84 | -LRB- | denotes | ( |
| T3332 | 77-82 | NNS | denotes | media |
| T3331 | 72-76 | CD | denotes | 1640 |
| T3330 | 67-71 | NNP | denotes | RPMI |
| T3329 | 64-66 | IN | denotes | in |
| T3328 | 53-63 | VBN | denotes | maintained |
| T3327 | 48-52 | VBD | denotes | were |
| T3326 | 46-47 | -RRB- | denotes | ) |
| T3325 | 40-46 | CD | denotes | TIB-71 |
| T3324 | 35-39 | NNP | denotes | ATCC |
| T3323 | 34-35 | -LRB- | denotes | ( |
| T3322 | 28-33 | NNS | denotes | cells |
| T3321 | 22-27 | CD | denotes | 264.7 |
| T3320 | 18-21 | NNP | denotes | RAW |
| T3319 | 7-17 | NN | denotes | macrophage |
| T3318 | 0-6 | NNP | denotes | Murine |
| T3510 | 1011-1015 | NN | denotes | blue |
| T3509 | 1004-1010 | NN | denotes | trypan |
| T3508 | 1000-1003 | DT | denotes | the |
| T3507 | 994-999 | VBG | denotes | using |
| T3506 | 983-993 | VBN | denotes | determined |
| T3505 | 979-982 | VBD | denotes | was |
| T3504 | 969-978 | NN | denotes | viability |
| T3503 | 964-968 | NNP | denotes | Cell |
| T3502 | 962-963 | . | denotes | . |
| T3501 | 957-962 | NN | denotes | serum |
| T3500 | 948-956 | JJ | denotes | LPS-free |
| T3499 | 938-947 | VBN | denotes | certified |
| T3498 | 935-937 | IN | denotes | of |
| T3497 | 931-934 | NN | denotes | use |
| T3496 | 927-930 | DT | denotes | the |
| T3495 | 919-926 | IN | denotes | through |
| T3494 | 910-918 | NNS | denotes | cultures |
| T3493 | 905-909 | NN | denotes | cell |
| T3492 | 901-904 | DT | denotes | all |
| T3491 | 896-900 | IN | denotes | from |
| T3490 | 882-895 | NN | denotes | contamination |
| T3489 | 863-881 | NN | denotes | lipopolysaccharide |
| T3488 | 853-862 | JJ | denotes | bacterial |
| T3487 | 845-852 | VB | denotes | exclude |
| T3486 | 842-844 | TO | denotes | to |
| T3481 | 816-817 | -RRB- | denotes | ) |
| T3480 | 813-816 | NNP | denotes | BRL |
| T3479 | 807-812 | NNP | denotes | Gibco |
| T3478 | 806-807 | -LRB- | denotes | ( |
| T3485 | 836-841 | VBN | denotes | taken |
| T3484 | 831-835 | VBD | denotes | were |
| T3483 | 819-830 | NNS | denotes | Precautions |
| T3482 | 817-818 | . | denotes | . |
| R2378 | T3318 | T3320 | compound | Murine,RAW |
| R2379 | T3319 | T3320 | compound | macrophage,RAW |
| R2380 | T3320 | T3328 | nsubjpass | RAW,maintained |
| R2381 | T3321 | T3322 | nummod | 264.7,cells |
| R2382 | T3322 | T3320 | appos | cells,RAW |
| R2383 | T3323 | T3320 | punct | (,RAW |
| R2384 | T3324 | T3320 | appos | ATCC,RAW |
| R2385 | T3325 | T3324 | nummod | TIB-71,ATCC |
| R2386 | T3326 | T3320 | punct | ),RAW |
| R2387 | T3327 | T3328 | auxpass | were,maintained |
| R2388 | T3328 | T3328 | ROOT | maintained,maintained |
| R2389 | T3329 | T3328 | prep | in,maintained |
| R2390 | T3330 | T3332 | nmod | RPMI,media |
| R2391 | T3331 | T3332 | compound | 1640,media |
| R2392 | T3332 | T3329 | pobj | media,in |
| R2393 | T3333 | T3335 | punct | (,BRL |
| R2394 | T3334 | T3335 | compound | Gibco,BRL |
| R2395 | T3335 | T3332 | appos | BRL,media |
| R2396 | T3336 | T3332 | punct | ),media |
| R2397 | T3337 | T3328 | punct | ",",maintained |
| R2398 | T3338 | T3328 | conj | supplemented,maintained |
| R2399 | T3339 | T3338 | prep | with,supplemented |
| R2400 | T3340 | T3342 | nummod | 2,L-glutamine |
| R2401 | T3341 | T3342 | compound | mM,L-glutamine |
| R2402 | T3342 | T3339 | pobj | L-glutamine,with |
| R2403 | T3343 | T3342 | punct | (,L-glutamine |
| R2404 | T3344 | T3345 | compound | Gibco,BRL |
| R2405 | T3345 | T3342 | appos | BRL,L-glutamine |
| R2406 | T3346 | T3342 | punct | ),L-glutamine |
| R2407 | T3347 | T3342 | punct | ",",L-glutamine |
| R2408 | T3348 | T3349 | nummod | 10,% |
| R2409 | T3349 | T3351 | compound | %,supreme |
| R2410 | T3350 | T3351 | compound | serum,supreme |
| R2411 | T3351 | T3342 | appos | supreme,L-glutamine |
| R2412 | T3352 | T3353 | punct | (,BioWhittaker |
| R2413 | T3353 | T3351 | appos | BioWhittaker,supreme |
| R2414 | T3354 | T3353 | punct | ),BioWhittaker |
| R2415 | T3355 | T3351 | punct | ",",supreme |
| R2416 | T3356 | T3360 | nummod | 200,penicillin |
| R2417 | T3357 | T3360 | compound | µg,penicillin |
| R2418 | T3358 | T3360 | compound | /,penicillin |
| R2419 | T3359 | T3360 | compound | ml,penicillin |
| R2420 | T3360 | T3351 | conj | penicillin,supreme |
| R2421 | T3361 | T3360 | punct | ",",penicillin |
| R2422 | T3362 | T3363 | nummod | 100,µg |
| R2423 | T3363 | T3366 | nmod | µg,streptomycin |
| R2424 | T3364 | T3366 | nmod | /,streptomycin |
| R2425 | T3365 | T3366 | compound | ml,streptomycin |
| R2426 | T3366 | T3360 | conj | streptomycin,penicillin |
| R2427 | T3367 | T3366 | punct | ",",streptomycin |
| R2428 | T3368 | T3372 | nummod | 25,acid |
| R2429 | T3369 | T3372 | nmod | mM,acid |
| R2430 | T3370 | T3372 | nmod | N-2-hydroxyethylpiperazine-N-2-ethane,acid |
| R2431 | T3371 | T3372 | amod | sulphonic,acid |
| R2432 | T3372 | T3380 | nmod | acid,bicarbonate |
| R2433 | T3373 | T3374 | punct | (,HEPES |
| R2434 | T3374 | T3372 | appos | HEPES,acid |
| R2435 | T3375 | T3374 | punct | ),HEPES |
| R2436 | T3376 | T3374 | cc | and,HEPES |
| R2437 | T3377 | T3380 | nummod | 25,bicarbonate |
| R2438 | T3378 | T3380 | compound | mM,bicarbonate |
| R2439 | T3379 | T3380 | compound | sodium,bicarbonate |
| R2440 | T3380 | T3366 | conj | bicarbonate,streptomycin |
| R2441 | T3381 | T3342 | punct | ",",L-glutamine |
| R2442 | T3382 | T3338 | prep | in,supplemented |
| R2443 | T3383 | T3384 | nummod | 5,% |
| R2444 | T3384 | T3382 | pobj | %,in |
| R2445 | T3385 | T3391 | nummod | CO2,atmosphere |
| R2446 | T3386 | T3385 | cc | and,CO2 |
| R2447 | T3387 | T3388 | nummod | 95,% |
| R2448 | T3388 | T3391 | nmod | %,atmosphere |
| R2449 | T3389 | T3391 | amod | humidified,atmosphere |
| R2450 | T3390 | T3391 | compound | air,atmosphere |
| R2451 | T3391 | T3391 | ROOT | atmosphere,atmosphere |
| R2452 | T3392 | T3391 | prep | at,atmosphere |
| R2453 | T3393 | T3394 | nummod | 37,° |
| R2454 | T3394 | T3396 | compound | °,Wild-type |
| R2455 | T3395 | T3396 | compound | C.,Wild-type |
| R2456 | T3396 | T3392 | pobj | Wild-type,at |
| R2457 | T3397 | T3396 | punct | (,Wild-type |
| R2458 | T3398 | T3401 | compound | Cebpb,+ |
| R2459 | T3399 | T3401 | compound | +,+ |
| R2460 | T3400 | T3401 | compound | /,+ |
| R2461 | T3401 | T3396 | appos | +,Wild-type |
| R2462 | T3402 | T3396 | punct | ),Wild-type |
| R2463 | T3403 | T3391 | cc | and,atmosphere |
| R2464 | T3404 | T3391 | conj | knockout,atmosphere |
| R2465 | T3405 | T3391 | punct | (,atmosphere |
| R2466 | T3406 | T3407 | nsubj | Cebpb,− |
| R2467 | T3407 | T3391 | appos | −,atmosphere |
| R2468 | T3408 | T3409 | nummod | /,− |
| R2469 | T3409 | T3407 | appos | −,− |
| R2470 | T3410 | T3407 | punct | ),− |
| R2471 | T3411 | T3413 | nmod | mouse,fibroblasts |
| R2472 | T3412 | T3413 | amod | embryonic,fibroblasts |
| R2473 | T3413 | T3391 | appos | fibroblasts,atmosphere |
| R2474 | T3414 | T3413 | punct | (,fibroblasts |
| R2475 | T3415 | T3413 | appos | MEFs,fibroblasts |
| R2476 | T3416 | T3413 | punct | ),fibroblasts |
| R2477 | T3417 | T3419 | nmod | [,] |
| R2478 | T3418 | T3419 | nummod | 34,] |
| R2479 | T3419 | T3421 | nsubjpass | ],grown |
| R2480 | T3420 | T3421 | auxpass | were,grown |
| R2481 | T3421 | T3421 | ROOT | grown,grown |
| R2482 | T3422 | T3421 | prep | in,grown |
| R2483 | T3423 | T3428 | poss | Dulbecco,medium |
| R2484 | T3424 | T3423 | case | 's,Dulbecco |
| R2485 | T3425 | T3428 | amod | modified,medium |
| R2486 | T3426 | T3428 | poss | Eagle,medium |
| R2487 | T3427 | T3426 | case | 's,Eagle |
| R2488 | T3428 | T3422 | pobj | medium,in |
| R2489 | T3429 | T3428 | punct | (,medium |
| R2490 | T3430 | T3428 | appos | Invitrogen,medium |
| R2491 | T3431 | T3428 | punct | ),medium |
| R2492 | T3432 | T3421 | conj | supplemented,grown |
| R2493 | T3433 | T3432 | prep | with,supplemented |
| R2494 | T3434 | T3435 | nummod | 10,% |
| R2495 | T3435 | T3438 | nmod | %,serum |
| R2496 | T3436 | T3438 | amod | fetal,serum |
| R2497 | T3437 | T3438 | amod | bovine,serum |
| R2498 | T3438 | T3433 | pobj | serum,with |
| R2499 | T3439 | T3438 | cc | and,serum |
| R2500 | T3440 | T3441 | nummod | 1,% |
| R2501 | T3441 | T3443 | nmod | %,solution |
| R2502 | T3442 | T3443 | amod | penicillin/streptomycin/glutamate,solution |
| R2503 | T3443 | T3438 | conj | solution,serum |
| R2504 | T3444 | T3445 | punct | (,Cellgro |
| R2505 | T3445 | T3443 | appos | Cellgro,solution |
| R2506 | T3446 | T3445 | punct | ),Cellgro |
| R2507 | T3447 | T3421 | punct | .,grown |
| R2508 | T3448 | T3450 | amod | Primary,macrophages |
| R2509 | T3449 | T3450 | amod | peritoneal,macrophages |
| R2510 | T3450 | T3452 | nsubjpass | macrophages,obtained |
| R2511 | T3451 | T3452 | auxpass | were,obtained |
| R2512 | T3452 | T3452 | ROOT | obtained,obtained |
| R2513 | T3453 | T3452 | prep | by,obtained |
| R2514 | T3454 | T3453 | pcomp | injecting,by |
| R2515 | T3455 | T3456 | compound | C57BL/6,mice |
| R2516 | T3456 | T3454 | dobj | mice,injecting |
| R2517 | T3457 | T3454 | prep | with,injecting |
| R2518 | T3458 | T3459 | nummod | 3,% |
| R2519 | T3459 | T3461 | nmod | %,broth |
| R2520 | T3460 | T3461 | compound | thioglycollate,broth |
| R2521 | T3461 | T3457 | pobj | broth,with |
| R2522 | T3462 | T3461 | acl | followed,broth |
| R2523 | T3463 | T3462 | agent | by,followed |
| R2524 | T3464 | T3465 | amod | peritoneal,lavage |
| R2525 | T3465 | T3463 | pobj | lavage,by |
| R2526 | T3466 | T3465 | nummod | 3,lavage |
| R2527 | T3467 | T3468 | nummod | 5,days |
| R2528 | T3468 | T3469 | npadvmod | days,later |
| R2529 | T3469 | T3462 | advmod | later,followed |
| R2530 | T3470 | T3452 | punct | ",",obtained |
| R2531 | T3471 | T3452 | cc | and,obtained |
| R2532 | T3472 | T3452 | conj | maintained,obtained |
| R2533 | T3473 | T3472 | prep | in,maintained |
| R2534 | T3474 | T3475 | nummod | 50,% |
| R2535 | T3475 | T3473 | pobj | %,in |
| R2536 | T3476 | T3477 | nummod | DMEM/F12,media |
| R2537 | T3477 | T3473 | pobj | media,in |
| R2538 | T3478 | T3480 | punct | (,BRL |
| R2539 | T3479 | T3480 | compound | Gibco,BRL |
| R2540 | T3480 | T3472 | appos | BRL,maintained |
| R2541 | T3481 | T3480 | punct | ),BRL |
| R2542 | T3482 | T3452 | punct | .,obtained |
| R2543 | T3483 | T3485 | nsubjpass | Precautions,taken |
| R2544 | T3484 | T3485 | auxpass | were,taken |
| R2545 | T3485 | T3485 | ROOT | taken,taken |
| R2546 | T3486 | T3487 | aux | to,exclude |
| R2547 | T3487 | T3485 | advcl | exclude,taken |
| R2548 | T3488 | T3490 | amod | bacterial,contamination |
| R2549 | T3489 | T3490 | compound | lipopolysaccharide,contamination |
| R2550 | T3490 | T3487 | dobj | contamination,exclude |
| R2551 | T3491 | T3490 | prep | from,contamination |
| R2552 | T3492 | T3494 | det | all,cultures |
| R2553 | T3493 | T3494 | compound | cell,cultures |
| R2554 | T3494 | T3491 | pobj | cultures,from |
| R2555 | T3495 | T3487 | prep | through,exclude |
| R2556 | T3496 | T3497 | det | the,use |
| R2557 | T3497 | T3495 | pobj | use,through |
| R2558 | T3498 | T3497 | prep | of,use |
| R2559 | T3499 | T3501 | amod | certified,serum |
| R2560 | T3500 | T3501 | amod | LPS-free,serum |
| R2561 | T3501 | T3498 | pobj | serum,of |
| R2562 | T3502 | T3485 | punct | .,taken |
| R2563 | T3503 | T3504 | compound | Cell,viability |
| R2564 | T3504 | T3506 | nsubjpass | viability,determined |
| R2565 | T3505 | T3506 | auxpass | was,determined |
| R2566 | T3506 | T3506 | ROOT | determined,determined |
| R2567 | T3507 | T3506 | advcl | using,determined |
| R2568 | T3508 | T3510 | det | the,blue |
| R2569 | T3509 | T3510 | compound | trypan,blue |
| R2570 | T3510 | T3516 | nmod | blue,method |
| R2571 | T3511 | T3510 | punct | (,blue |
| R2572 | T3512 | T3510 | appos | Sigma,blue |
| R2573 | T3513 | T3510 | punct | ),blue |
| R2574 | T3514 | T3515 | compound | dye,exclusion |
| R2575 | T3515 | T3516 | compound | exclusion,method |
| R2576 | T3516 | T3507 | dobj | method,using |
| R2577 | T3517 | T3506 | punct | .,determined |
| R2578 | T3518 | T3519 | det | All,cultures |
| R2579 | T3519 | T3522 | nsubjpass | cultures,checked |
| R2580 | T3520 | T3522 | auxpass | were,checked |
| R2581 | T3521 | T3522 | advmod | routinely,checked |
| R2582 | T3522 | T3522 | ROOT | checked,checked |
| R2583 | T3523 | T3524 | aux | to,exclude |
| R2584 | T3524 | T3522 | xcomp | exclude,checked |
| R2585 | T3525 | T3526 | compound | Mycoplasma,infection |
| R2586 | T3526 | T3524 | dobj | infection,exclude |
| R2587 | T3527 | T3526 | prep | by,infection |
| R2588 | T3528 | T3529 | amod | nuclear,staining |
| R2589 | T3529 | T3527 | pobj | staining,by |
| R2590 | T3530 | T3524 | advcl | using,exclude |
| R2591 | T3531 | T3532 | nsubj | Hoechst,stain |
| R2592 | T3532 | T3530 | xcomp | stain,using |
| R2593 | T3533 | T3535 | nummod | 33258,Sigma |
| R2594 | T3534 | T3535 | punct | (,Sigma |
| R2595 | T3535 | T3524 | npadvmod | Sigma,exclude |
| R2596 | T3536 | T3535 | punct | ),Sigma |
| R2597 | T3537 | T3535 | cc | and,Sigma |
| R2598 | T3538 | T3541 | det | the,Kit |
| R2599 | T3539 | T3541 | compound | MycoAlert,Kit |
| R2600 | T3540 | T3541 | compound | Detection,Kit |
| R2601 | T3541 | T3535 | conj | Kit,Sigma |
| R2602 | T3542 | T3541 | punct | (,Kit |
| R2603 | T3543 | T3541 | appos | Lonza,Kit |
| R2604 | T3544 | T3541 | punct | ),Kit |
| R2605 | T3545 | T3522 | punct | .,checked |
| R2606 | T3546 | T3547 | amod | Bacterial,lipopolysaccharide |
| R2607 | T3547 | T3558 | nsubjpass | lipopolysaccharide,obtained |
| R2608 | T3548 | T3549 | punct | (,LPS |
| R2609 | T3549 | T3547 | appos | LPS,lipopolysaccharide |
| R2610 | T3550 | T3547 | punct | ),lipopolysaccharide |
| R2611 | T3551 | T3555 | punct | (,Re595 |
| R2612 | T3552 | T3555 | compound | Salmonella,Re595 |
| R2613 | T3553 | T3555 | compound | minnesota,Re595 |
| R2614 | T3554 | T3555 | compound | Strain,Re595 |
| R2615 | T3555 | T3547 | appos | Re595,lipopolysaccharide |
| R2616 | T3556 | T3555 | punct | ),Re595 |
| R2617 | T3557 | T3558 | auxpass | was,obtained |
| R2618 | T3558 | T3558 | ROOT | obtained,obtained |
| R2619 | T3559 | T3558 | prep | from,obtained |
| R2620 | T3560 | T3559 | pobj | Sigma,from |
| R2621 | T3561 | T3558 | punct | .,obtained |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 23472114-12048245-87899172 | 455-457 | 12048245 | denotes | 34 |
| T60199 | 455-457 | 12048245 | denotes | 34 |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3287 | 1298-1303 | NNP | denotes | Sigma |
| T3286 | 1293-1297 | IN | denotes | from |
| T3285 | 1284-1292 | VB | denotes | obtained |
| T3284 | 1280-1283 | VB | denotes | was |
| T3283 | 1278-1279 | -RRB- | denotes | ) |
| T3282 | 1273-1278 | NN | denotes | Re595 |
| T3281 | 1266-1272 | NN | denotes | Strain |
| T3280 | 1256-1265 | NN | denotes | minnesota |
| T3279 | 1245-1255 | NN | denotes | Salmonella |
| T3278 | 1244-1245 | -LRB- | denotes | ( |
| T3277 | 1242-1243 | -RRB- | denotes | ) |
| T3276 | 1239-1242 | NN | denotes | LPS |
| T3275 | 1238-1239 | -LRB- | denotes | ( |
| T3274 | 1219-1237 | NN | denotes | lipopolysaccharide |
| T3273 | 1209-1218 | JJ | denotes | Bacterial |
| T3272 | 1206-1207 | -RRB- | denotes | ) |
| T3271 | 1201-1206 | NN | denotes | Lonza |
| T3270 | 1200-1201 | -LRB- | denotes | ( |
| T3269 | 1196-1199 | NN | denotes | Kit |
| T3268 | 1186-1195 | NNP | denotes | Detection |
| T3267 | 1176-1185 | NNP | denotes | MycoAlert |
| T3266 | 1172-1175 | DT | denotes | the |
| T3265 | 1168-1171 | CC | denotes | and |
| T3264 | 1166-1167 | -RRB- | denotes | ) |
| T3263 | 1161-1166 | NN | denotes | Sigma |
| T3262 | 1160-1161 | -LRB- | denotes | ( |
| T3261 | 1154-1159 | CD | denotes | 33258 |
| T3260 | 1148-1153 | NN | denotes | stain |
| T3259 | 1140-1147 | NNP | denotes | Hoechst |
| T3258 | 1134-1139 | VB | denotes | using |
| T3257 | 1125-1133 | NN | denotes | staining |
| T3256 | 1117-1124 | JJ | denotes | nuclear |
| T3255 | 1114-1116 | IN | denotes | by |
| T3254 | 1104-1113 | NN | denotes | infection |
| T3253 | 1093-1103 | NN | denotes | Mycoplasma |
| T3252 | 1085-1092 | VB | denotes | exclude |
| T3251 | 1082-1084 | TO | denotes | to |
| T3250 | 1074-1081 | VB | denotes | checked |
| T3249 | 1064-1073 | RB | denotes | routinely |
| T3248 | 1059-1063 | VB | denotes | were |
| T3247 | 1050-1058 | NN | denotes | cultures |
| T3246 | 1046-1049 | DT | denotes | All |
| T3245 | 1038-1044 | NN | denotes | method |
| T3244 | 1028-1037 | NN | denotes | exclusion |
| T3243 | 1024-1027 | NN | denotes | dye |
| T3242 | 1022-1023 | -RRB- | denotes | ) |
| T3241 | 1017-1022 | NN | denotes | Sigma |
| T3240 | 1016-1017 | -LRB- | denotes | ( |
| T3239 | 1011-1015 | JJ | denotes | blue |
| T3238 | 1004-1010 | NN | denotes | trypan |
| T3237 | 1000-1003 | DT | denotes | the |
| T3236 | 994-999 | VB | denotes | using |
| T3235 | 983-993 | VB | denotes | determined |
| T3234 | 979-982 | VB | denotes | was |
| T3233 | 969-978 | NN | denotes | viability |
| T3232 | 964-968 | NN | denotes | Cell |
| T3231 | 957-962 | NN | denotes | serum |
| T3230 | 948-956 | JJ | denotes | LPS-free |
| T3229 | 938-947 | VB | denotes | certified |
| T3228 | 935-937 | IN | denotes | of |
| T3227 | 931-934 | NN | denotes | use |
| T3226 | 927-930 | DT | denotes | the |
| T3225 | 919-926 | IN | denotes | through |
| T3224 | 910-918 | NN | denotes | cultures |
| T3223 | 905-909 | NN | denotes | cell |
| T3222 | 901-904 | DT | denotes | all |
| T3221 | 896-900 | IN | denotes | from |
| T3220 | 882-895 | NN | denotes | contamination |
| T3219 | 863-881 | NN | denotes | lipopolysaccharide |
| T3218 | 853-862 | JJ | denotes | bacterial |
| T3217 | 845-852 | VB | denotes | exclude |
| T3216 | 842-844 | TO | denotes | to |
| T3215 | 836-841 | VB | denotes | taken |
| T3214 | 831-835 | VB | denotes | were |
| T3213 | 819-830 | NN | denotes | Precautions |
| T3212 | 816-817 | -RRB- | denotes | ) |
| T3211 | 813-816 | NNP | denotes | BRL |
| T3210 | 807-812 | NNP | denotes | Gibco |
| T3209 | 806-807 | -LRB- | denotes | ( |
| T3208 | 800-805 | NN | denotes | media |
| T3207 | 791-799 | NN | denotes | DMEM/F12 |
| T3206 | 789-790 | NN | denotes | % |
| T3205 | 787-789 | CD | denotes | 50 |
| T3204 | 784-786 | IN | denotes | in |
| T3203 | 773-783 | VB | denotes | maintained |
| T3202 | 769-772 | CC | denotes | and |
| T3201 | 767-768 | -COMMA- | denotes | , |
| T3200 | 762-767 | RB | denotes | later |
| T3199 | 757-761 | NN | denotes | days |
| T3198 | 753-756 | CD | denotes | 3–5 |
| T3197 | 746-752 | NN | denotes | lavage |
| T3196 | 735-745 | JJ | denotes | peritoneal |
| T3195 | 732-734 | IN | denotes | by |
| T3194 | 723-731 | VB | denotes | followed |
| T3193 | 717-722 | NN | denotes | broth |
| T3192 | 702-716 | NN | denotes | thioglycollate |
| T3191 | 700-701 | NN | denotes | % |
| T3190 | 699-700 | CD | denotes | 3 |
| T3189 | 694-698 | IN | denotes | with |
| T3188 | 689-693 | NN | denotes | mice |
| T3187 | 681-688 | NN | denotes | C57BL/6 |
| T3186 | 671-680 | VB | denotes | injecting |
| T3185 | 668-670 | IN | denotes | by |
| T3184 | 659-667 | VB | denotes | obtained |
| T3183 | 654-658 | VB | denotes | were |
| T3182 | 642-653 | NN | denotes | macrophages |
| T3181 | 631-641 | JJ | denotes | peritoneal |
| T3180 | 623-630 | JJ | denotes | Primary |
| R2266 | T3182 | T3180 | arg1Of | macrophages,Primary |
| R2267 | T3182 | T3181 | arg1Of | macrophages,peritoneal |
| R2268 | T3182 | T3183 | arg1Of | macrophages,were |
| R2269 | T3182 | T3184 | arg2Of | macrophages,obtained |
| R2270 | T3182 | T3203 | arg1Of | macrophages,maintained |
| R2271 | T3184 | T3183 | arg2Of | obtained,were |
| R2272 | T3184 | T3185 | arg1Of | obtained,by |
| R2273 | T3184 | T3202 | arg1Of | obtained,and |
| R2274 | T3186 | T3185 | arg2Of | injecting,by |
| R2275 | T3188 | T3186 | arg2Of | mice,injecting |
| R2276 | T3188 | T3187 | arg1Of | mice,C57BL/6 |
| R2277 | T3188 | T3189 | arg1Of | mice,with |
| R2278 | T3190 | T3191 | arg1Of | 3,% |
| R2279 | T3193 | T3189 | arg2Of | broth,with |
| R2280 | T3193 | T3190 | arg1Of | broth,3 |
| R2281 | T3193 | T3192 | arg1Of | broth,thioglycollate |
| R2282 | T3193 | T3194 | arg2Of | broth,followed |
| R2283 | T3194 | T3200 | arg1Of | followed,later |
| R2284 | T3197 | T3194 | arg1Of | lavage,followed |
| R2285 | T3197 | T3195 | arg2Of | lavage,by |
| R2286 | T3197 | T3196 | arg1Of | lavage,peritoneal |
| R2287 | T3199 | T3198 | arg1Of | days,3–5 |
| R2288 | T3200 | T3199 | arg1Of | later,days |
| R2289 | T3202 | T3201 | arg1Of | and,"," |
| R2290 | T3203 | T3202 | arg2Of | maintained,and |
| R2291 | T3203 | T3204 | arg1Of | maintained,in |
| R2292 | T3205 | T3206 | arg1Of | 50,% |
| R2293 | T3208 | T3204 | arg2Of | media,in |
| R2294 | T3208 | T3205 | arg1Of | media,50 |
| R2295 | T3208 | T3207 | arg1Of | media,DMEM/F12 |
| R2296 | T3208 | T3209 | arg1Of | media,( |
| R2297 | T3211 | T3209 | arg2Of | BRL,( |
| R2298 | T3211 | T3210 | arg1Of | BRL,Gibco |
| R2299 | T3212 | T3209 | arg3Of | ),( |
| R2300 | T3213 | T3214 | arg1Of | Precautions,were |
| R2301 | T3213 | T3215 | arg2Of | Precautions,taken |
| R2302 | T3213 | T3217 | arg1Of | Precautions,exclude |
| R2303 | T3215 | T3214 | arg2Of | taken,were |
| R2304 | T3217 | T3215 | arg3Of | exclude,taken |
| R2305 | T3217 | T3216 | arg1Of | exclude,to |
| R2306 | T3217 | T3225 | arg1Of | exclude,through |
| R2307 | T3220 | T3217 | arg2Of | contamination,exclude |
| R2308 | T3220 | T3218 | arg1Of | contamination,bacterial |
| R2309 | T3220 | T3219 | arg1Of | contamination,lipopolysaccharide |
| R2310 | T3220 | T3221 | arg1Of | contamination,from |
| R2311 | T3224 | T3221 | arg2Of | cultures,from |
| R2312 | T3224 | T3222 | arg1Of | cultures,all |
| R2313 | T3224 | T3223 | arg1Of | cultures,cell |
| R2314 | T3227 | T3225 | arg2Of | use,through |
| R2315 | T3227 | T3226 | arg1Of | use,the |
| R2316 | T3227 | T3228 | arg1Of | use,of |
| R2317 | T3231 | T3228 | arg2Of | serum,of |
| R2318 | T3231 | T3229 | arg2Of | serum,certified |
| R2319 | T3231 | T3230 | arg1Of | serum,LPS-free |
| R2320 | T3233 | T3232 | arg1Of | viability,Cell |
| R2321 | T3233 | T3234 | arg1Of | viability,was |
| R2322 | T3233 | T3235 | arg2Of | viability,determined |
| R2323 | T3235 | T3234 | arg2Of | determined,was |
| R2324 | T3236 | T3235 | arg3Of | using,determined |
| R2325 | T3241 | T3240 | arg2Of | Sigma,( |
| R2326 | T3242 | T3240 | arg3Of | ),( |
| R2327 | T3245 | T3236 | arg2Of | method,using |
| R2328 | T3245 | T3237 | arg1Of | method,the |
| R2329 | T3245 | T3238 | arg1Of | method,trypan |
| R2330 | T3245 | T3239 | arg1Of | method,blue |
| R2331 | T3245 | T3240 | arg1Of | method,( |
| R2332 | T3245 | T3243 | arg1Of | method,dye |
| R2333 | T3245 | T3244 | arg1Of | method,exclusion |
| R2334 | T3247 | T3246 | arg1Of | cultures,All |
| R2335 | T3247 | T3248 | arg1Of | cultures,were |
| R2336 | T3247 | T3250 | arg2Of | cultures,checked |
| R2337 | T3250 | T3248 | arg2Of | checked,were |
| R2338 | T3250 | T3249 | arg1Of | checked,routinely |
| R2339 | T3250 | T3251 | modOf | checked,to |
| R2340 | T3252 | T3251 | arg1Of | exclude,to |
| R2341 | T3254 | T3252 | arg2Of | infection,exclude |
| R2342 | T3254 | T3253 | arg1Of | infection,Mycoplasma |
| R2343 | T3254 | T3255 | arg1Of | infection,by |
| R2344 | T3257 | T3256 | arg1Of | staining,nuclear |
| R2345 | T3257 | T3258 | arg1Of | staining,using |
| R2346 | T3257 | T3265 | arg1Of | staining,and |
| R2347 | T3260 | T3258 | arg2Of | stain,using |
| R2348 | T3260 | T3259 | arg1Of | stain,Hoechst |
| R2349 | T3260 | T3261 | arg1Of | stain,33258 |
| R2350 | T3260 | T3262 | arg1Of | stain,( |
| R2351 | T3263 | T3262 | arg2Of | Sigma,( |
| R2352 | T3264 | T3262 | arg3Of | ),( |
| R2353 | T3265 | T3255 | arg2Of | and,by |
| R2354 | T3268 | T3267 | arg1Of | Detection,MycoAlert |
| R2355 | T3269 | T3265 | arg2Of | Kit,and |
| R2356 | T3269 | T3266 | arg1Of | Kit,the |
| R2357 | T3269 | T3268 | arg1Of | Kit,Detection |
| R2358 | T3269 | T3270 | arg1Of | Kit,( |
| R2359 | T3271 | T3270 | arg2Of | Lonza,( |
| R2360 | T3272 | T3270 | arg3Of | ),( |
| R2361 | T3274 | T3273 | arg1Of | lipopolysaccharide,Bacterial |
| R2362 | T3274 | T3275 | arg1Of | lipopolysaccharide,( |
| R2363 | T3274 | T3278 | arg1Of | lipopolysaccharide,( |
| R2364 | T3274 | T3284 | arg1Of | lipopolysaccharide,was |
| R2365 | T3274 | T3285 | arg2Of | lipopolysaccharide,obtained |
| R2366 | T3276 | T3275 | arg2Of | LPS,( |
| R2367 | T3277 | T3275 | arg3Of | ),( |
| R2368 | T3282 | T3278 | arg2Of | Re595,( |
| R2369 | T3282 | T3279 | arg1Of | Re595,Salmonella |
| R2370 | T3282 | T3280 | arg1Of | Re595,minnesota |
| R2371 | T3282 | T3281 | arg1Of | Re595,Strain |
| R2372 | T3283 | T3278 | arg3Of | ),( |
| R2373 | T3285 | T3284 | arg2Of | obtained,was |
| R2374 | T3285 | T3286 | arg1Of | obtained,from |
| R2375 | T3287 | T3286 | arg2Of | Sigma,from |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3170 | 409-414 | Protein | denotes | Cebpb |
| T3169 | 385-390 | Protein | denotes | Cebpb |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3158 | 957-962 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| T3157 | 556-561 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| T3156 | 148-153 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3173 | 964-968 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3165 | 1209-1304 | Sentence | denotes | Bacterial lipopolysaccharide (LPS) (Salmonella minnesota Strain Re595) was obtained from Sigma. |
| T3164 | 1046-1208 | Sentence | denotes | All cultures were routinely checked to exclude Mycoplasma infection by nuclear staining using Hoechst stain 33258 (Sigma) and the MycoAlert Detection Kit (Lonza). |
| T3163 | 964-1045 | Sentence | denotes | Cell viability was determined using the trypan blue (Sigma) dye exclusion method. |
| T3162 | 819-963 | Sentence | denotes | Precautions were taken to exclude bacterial lipopolysaccharide contamination from all cell cultures through the use of certified LPS-free serum. |
| T3161 | 623-818 | Sentence | denotes | Primary peritoneal macrophages were obtained by injecting C57BL/6 mice with 3% thioglycollate broth followed by peritoneal lavage 3–5 days later, and maintained in 50% DMEM/F12 media (Gibco BRL). |
| T3160 | 0-622 | Sentence | denotes | Murine macrophage RAW 264.7 cells (ATCC TIB-71) were maintained in RPMI 1640 media (Gibco BRL), supplemented with 2 mM L-glutamine (Gibco BRL), 10% serum supreme (BioWhittaker), 200 µg/ml penicillin, 100 µg/ml streptomycin, 25 mM N-2-hydroxyethylpiperazine-N-2-ethane sulphonic acid (HEPES) and 25 mM sodium bicarbonate, in 5% CO2 and 95% humidified air atmosphere at 37°C. Wild-type (Cebpb+/+) and knockout (Cebpb−/−) mouse embryonic fibroblasts (MEFs) [34] were grown in Dulbecco's modified Eagle's medium (Invitrogen) supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin/glutamate solution (Cellgro). |
| T35 | 0-373 | Sentence | denotes | Murine macrophage RAW 264.7 cells (ATCC TIB-71) were maintained in RPMI 1640 media (Gibco BRL), supplemented with 2 mM L-glutamine (Gibco BRL), 10% serum supreme (BioWhittaker), 200 µg/ml penicillin, 100 µg/ml streptomycin, 25 mM N-2-hydroxyethylpiperazine-N-2-ethane sulphonic acid (HEPES) and 25 mM sodium bicarbonate, in 5% CO2 and 95% humidified air atmosphere at 37°C. |
| T36 | 374-622 | Sentence | denotes | Wild-type (Cebpb+/+) and knockout (Cebpb−/−) mouse embryonic fibroblasts (MEFs) [34] were grown in Dulbecco's modified Eagle's medium (Invitrogen) supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin/glutamate solution (Cellgro). |
| T37 | 623-818 | Sentence | denotes | Primary peritoneal macrophages were obtained by injecting C57BL/6 mice with 3% thioglycollate broth followed by peritoneal lavage 3–5 days later, and maintained in 50% DMEM/F12 media (Gibco BRL). |
| T38 | 819-963 | Sentence | denotes | Precautions were taken to exclude bacterial lipopolysaccharide contamination from all cell cultures through the use of certified LPS-free serum. |
| T39 | 964-1045 | Sentence | denotes | Cell viability was determined using the trypan blue (Sigma) dye exclusion method. |
| T40 | 1046-1208 | Sentence | denotes | All cultures were routinely checked to exclude Mycoplasma infection by nuclear staining using Hoechst stain 33258 (Sigma) and the MycoAlert Detection Kit (Lonza). |
| T41 | 1209-1304 | Sentence | denotes | Bacterial lipopolysaccharide (LPS) (Salmonella minnesota Strain Re595) was obtained from Sigma. |
ICD10
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3171 | 1093-1113 | http://purl.bioontology.org/ontology/ICD10/A49.3 | denotes | Mycoplasma infection |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3175 | 409-414 | Protein | denotes | Cebpb |
| T3174 | 385-390 | Protein | denotes | Cebpb |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3289 | 409-414 | Protein | denotes | Cebpb |
| T3288 | 385-390 | Protein | denotes | Cebpb |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3295 | 409-414 | Protein | denotes | Cebpb |
| T3294 | 385-390 | Protein | denotes | Cebpb |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3291 | 409-414 | Protein | denotes | Cebpb |
| T3290 | 385-390 | Protein | denotes | Cebpb |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3315 | 623-752 | Binding | denotes | Primary peritoneal macrophages were obtained by injecting C57BL/6 mice with 3% thioglycollate broth followed by peritoneal lavage |
| T3314 | 1085-1133 | Regulation | denotes | exclude Mycoplasma infection by nuclear staining |
| T3313 | 569-579 | Entity | denotes | penicillin |
| T3312 | 964-978 | Entity | denotes | Cell viability |
| T3311 | 1017-1022 | Protein | denotes | Sigma |
| T3310 | 623-653 | Entity | denotes | Primary peritoneal macrophages |
| T3309 | 1004-1023 | Entity | denotes | trypan blue (Sigma) |
| T3308 | 580-592 | Entity | denotes | streptomycin |
| T3307 | 1209-1243 | Entity | denotes | Bacterial lipopolysaccharide (LPS) |
| T3306 | 948-956 | Entity | denotes | LPS-free |
| T3305 | 796-799 | Protein | denotes | F12 |
| T3304 | 807-816 | Protein | denotes | Gibco BRL |
| T3303 | 569-602 | Entity | denotes | penicillin/streptomycin/glutamate |
| T3302 | 1239-1242 | Entity | denotes | LPS |
| T3301 | 702-716 | Entity | denotes | thioglycollate |
| T3300 | 1186-1207 | Protein | denotes | Detection Kit (Lonza) |
| T3299 | 863-881 | Entity | denotes | lipopolysaccharide |
| T3298 | 1298-1303 | Protein | denotes | Sigma |
| T3297 | 569-602 | Entity | denotes | penicillin/streptomycin/glutamate |
| T3296 | 1161-1166 | Protein | denotes | Sigma |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3151 | 409-414 | Protein | denotes | Cebpb |
| T3150 | 385-390 | Protein | denotes | Cebpb |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3155 | 409-414 | Protein | denotes | Cebpb |
| T3154 | 385-390 | Protein | denotes | Cebpb |
| T3153 | 409-414 | Protein | denotes | Cebpb |
| T3152 | 385-390 | Protein | denotes | Cebpb |