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PMC:3589482 / 5398-6702 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3561 1303-1304 . denotes .
T3560 1298-1303 NNP denotes Sigma
T3559 1293-1297 IN denotes from
T3558 1284-1292 VBN denotes obtained
T3557 1280-1283 VBD denotes was
T3556 1278-1279 -RRB- denotes )
T3555 1273-1278 NNP denotes Re595
T3554 1266-1272 NNP denotes Strain
T3553 1256-1265 NN denotes minnesota
T3552 1245-1255 NN denotes Salmonella
T3551 1244-1245 -LRB- denotes (
T3550 1242-1243 -RRB- denotes )
T3549 1239-1242 NNP denotes LPS
T3548 1238-1239 -LRB- denotes (
T3547 1219-1237 NN denotes lipopolysaccharide
T3546 1209-1218 JJ denotes Bacterial
T3545 1207-1208 . denotes .
T3544 1206-1207 -RRB- denotes )
T3543 1201-1206 NNP denotes Lonza
T3542 1200-1201 -LRB- denotes (
T3541 1196-1199 NNP denotes Kit
T3540 1186-1195 NNP denotes Detection
T3539 1176-1185 NNP denotes MycoAlert
T3538 1172-1175 DT denotes the
T3537 1168-1171 CC denotes and
T3536 1166-1167 -RRB- denotes )
T3535 1161-1166 NNP denotes Sigma
T3534 1160-1161 -LRB- denotes (
T3533 1154-1159 CD denotes 33258
T3532 1148-1153 VB denotes stain
T3531 1140-1147 NNP denotes Hoechst
T3530 1134-1139 VBG denotes using
T3529 1125-1133 NN denotes staining
T3528 1117-1124 JJ denotes nuclear
T3527 1114-1116 IN denotes by
T3526 1104-1113 NN denotes infection
T3525 1093-1103 NNP denotes Mycoplasma
T3524 1085-1092 VB denotes exclude
T3523 1082-1084 TO denotes to
T3522 1074-1081 VBN denotes checked
T3521 1064-1073 RB denotes routinely
T3520 1059-1063 VBD denotes were
T3519 1050-1058 NNS denotes cultures
T3518 1046-1049 DT denotes All
T3517 1044-1045 . denotes .
T3516 1038-1044 NN denotes method
T3515 1028-1037 NN denotes exclusion
T3514 1024-1027 NN denotes dye
T3513 1022-1023 -RRB- denotes )
T3512 1017-1022 NNP denotes Sigma
T3511 1016-1017 -LRB- denotes (
T3477 800-805 NNS denotes media
T3476 791-799 CD denotes DMEM/F12
T3475 789-790 NN denotes %
T3474 787-789 CD denotes 50
T3473 784-786 IN denotes in
T3472 773-783 VBD denotes maintained
T3471 769-772 CC denotes and
T3470 767-768 , denotes ,
T3469 762-767 RB denotes later
T3468 757-761 NNS denotes days
T3467 755-756 CD denotes 5
T3466 753-754 CD denotes 3
T3465 746-752 NN denotes lavage
T3464 735-745 JJ denotes peritoneal
T3463 732-734 IN denotes by
T3462 723-731 VBN denotes followed
T3461 717-722 NN denotes broth
T3460 702-716 NN denotes thioglycollate
T3459 700-701 NN denotes %
T3458 699-700 CD denotes 3
T3457 694-698 IN denotes with
T3456 689-693 NNS denotes mice
T3455 681-688 NNP denotes C57BL/6
T3454 671-680 VBG denotes injecting
T3453 668-670 IN denotes by
T3452 659-667 VBN denotes obtained
T3451 654-658 VBD denotes were
T3450 642-653 NNS denotes macrophages
T3449 631-641 JJ denotes peritoneal
T3448 623-630 JJ denotes Primary
T3447 621-622 . denotes .
T3446 620-621 -RRB- denotes )
T3445 613-620 NNP denotes Cellgro
T3444 612-613 -LRB- denotes (
T3443 603-611 NN denotes solution
T3442 569-602 JJ denotes penicillin/streptomycin/glutamate
T3441 567-568 NN denotes %
T3440 566-567 CD denotes 1
T3439 562-565 CC denotes and
T3438 556-561 NN denotes serum
T3437 549-555 JJ denotes bovine
T3436 543-548 JJ denotes fetal
T3435 541-542 NN denotes %
T3434 539-541 CD denotes 10
T3433 534-538 IN denotes with
T3432 521-533 VBN denotes supplemented
T3431 519-520 -RRB- denotes )
T3430 509-519 NNP denotes Invitrogen
T3429 508-509 -LRB- denotes (
T3428 501-507 NN denotes medium
T3427 498-500 POS denotes 's
T3426 493-498 NNP denotes Eagle
T3425 484-492 VBN denotes modified
T3424 481-483 POS denotes 's
T3423 473-481 NNP denotes Dulbecco
T3422 470-472 IN denotes in
T3421 464-469 VBN denotes grown
T3420 459-463 VBD denotes were
T3419 457-458 NNP denotes ]
T3418 455-457 CD denotes 34
T3417 454-455 NNP denotes [
T3416 452-453 -RRB- denotes )
T3415 448-452 NNS denotes MEFs
T3414 447-448 -LRB- denotes (
T3413 435-446 NNS denotes fibroblasts
T3412 425-434 JJ denotes embryonic
T3411 419-424 NN denotes mouse
T3410 417-418 -RRB- denotes )
T3409 416-417 NN denotes
T3408 415-416 CD denotes /
T3407 414-415 VBD denotes
T3406 409-414 NNP denotes Cebpb
T3405 408-409 -LRB- denotes (
T3404 399-407 NN denotes knockout
T3403 395-398 CC denotes and
T3402 393-394 -RRB- denotes )
T3401 392-393 NNP denotes +
T3400 391-392 NNP denotes /
T3399 390-391 NNP denotes +
T3398 385-390 NNP denotes Cebpb
T3397 384-385 -LRB- denotes (
T3396 374-383 NNP denotes Wild-type
T3395 371-373 NNP denotes C.
T3394 370-371 NN denotes °
T3393 368-370 CD denotes 37
T3392 365-367 IN denotes at
T3391 354-364 NN denotes atmosphere
T3390 350-353 NN denotes air
T3389 339-349 JJ denotes humidified
T3388 337-338 NN denotes %
T3387 335-337 CD denotes 95
T3386 331-334 CC denotes and
T3385 327-330 CD denotes CO2
T3384 325-326 NN denotes %
T3383 324-325 CD denotes 5
T3382 321-323 IN denotes in
T3381 319-320 , denotes ,
T3380 308-319 NN denotes bicarbonate
T3379 301-307 NN denotes sodium
T3378 298-300 NN denotes mM
T3377 295-297 CD denotes 25
T3376 291-294 CC denotes and
T3375 289-290 -RRB- denotes )
T3374 284-289 NNS denotes HEPES
T3373 283-284 -LRB- denotes (
T3372 278-282 NN denotes acid
T3371 268-277 JJ denotes sulphonic
T3370 230-267 NNP denotes N-2-hydroxyethylpiperazine-N-2-ethane
T3369 227-229 NNP denotes mM
T3368 224-226 CD denotes 25
T3367 222-223 , denotes ,
T3366 210-222 NN denotes streptomycin
T3365 207-209 NN denotes ml
T3364 206-207 NN denotes /
T3363 204-206 NN denotes µg
T3362 200-203 CD denotes 100
T3361 198-199 , denotes ,
T3360 188-198 NN denotes penicillin
T3359 185-187 NN denotes ml
T3358 184-185 NN denotes /
T3357 182-184 NN denotes µg
T3356 178-181 CD denotes 200
T3355 176-177 , denotes ,
T3354 175-176 -RRB- denotes )
T3353 163-175 NNP denotes BioWhittaker
T3352 162-163 -LRB- denotes (
T3351 154-161 NN denotes supreme
T3350 148-153 NN denotes serum
T3349 146-147 NN denotes %
T3348 144-146 CD denotes 10
T3347 142-143 , denotes ,
T3346 141-142 -RRB- denotes )
T3345 138-141 NNP denotes BRL
T3344 132-137 NNP denotes Gibco
T3343 131-132 -LRB- denotes (
T3342 119-130 NNP denotes L-glutamine
T3341 116-118 NNP denotes mM
T3340 114-115 CD denotes 2
T3339 109-113 IN denotes with
T3338 96-108 VBN denotes supplemented
T3337 94-95 , denotes ,
T3336 93-94 -RRB- denotes )
T3335 90-93 NNP denotes BRL
T3334 84-89 NNP denotes Gibco
T3333 83-84 -LRB- denotes (
T3332 77-82 NNS denotes media
T3331 72-76 CD denotes 1640
T3330 67-71 NNP denotes RPMI
T3329 64-66 IN denotes in
T3328 53-63 VBN denotes maintained
T3327 48-52 VBD denotes were
T3326 46-47 -RRB- denotes )
T3325 40-46 CD denotes TIB-71
T3324 35-39 NNP denotes ATCC
T3323 34-35 -LRB- denotes (
T3322 28-33 NNS denotes cells
T3321 22-27 CD denotes 264.7
T3320 18-21 NNP denotes RAW
T3319 7-17 NN denotes macrophage
T3318 0-6 NNP denotes Murine
T3510 1011-1015 NN denotes blue
T3509 1004-1010 NN denotes trypan
T3508 1000-1003 DT denotes the
T3507 994-999 VBG denotes using
T3506 983-993 VBN denotes determined
T3505 979-982 VBD denotes was
T3504 969-978 NN denotes viability
T3503 964-968 NNP denotes Cell
T3502 962-963 . denotes .
T3501 957-962 NN denotes serum
T3500 948-956 JJ denotes LPS-free
T3499 938-947 VBN denotes certified
T3498 935-937 IN denotes of
T3497 931-934 NN denotes use
T3496 927-930 DT denotes the
T3495 919-926 IN denotes through
T3494 910-918 NNS denotes cultures
T3493 905-909 NN denotes cell
T3492 901-904 DT denotes all
T3491 896-900 IN denotes from
T3490 882-895 NN denotes contamination
T3489 863-881 NN denotes lipopolysaccharide
T3488 853-862 JJ denotes bacterial
T3487 845-852 VB denotes exclude
T3486 842-844 TO denotes to
T3481 816-817 -RRB- denotes )
T3480 813-816 NNP denotes BRL
T3479 807-812 NNP denotes Gibco
T3478 806-807 -LRB- denotes (
T3485 836-841 VBN denotes taken
T3484 831-835 VBD denotes were
T3483 819-830 NNS denotes Precautions
T3482 817-818 . denotes .
R2378 T3318 T3320 compound Murine,RAW
R2379 T3319 T3320 compound macrophage,RAW
R2380 T3320 T3328 nsubjpass RAW,maintained
R2381 T3321 T3322 nummod 264.7,cells
R2382 T3322 T3320 appos cells,RAW
R2383 T3323 T3320 punct (,RAW
R2384 T3324 T3320 appos ATCC,RAW
R2385 T3325 T3324 nummod TIB-71,ATCC
R2386 T3326 T3320 punct ),RAW
R2387 T3327 T3328 auxpass were,maintained
R2388 T3328 T3328 ROOT maintained,maintained
R2389 T3329 T3328 prep in,maintained
R2390 T3330 T3332 nmod RPMI,media
R2391 T3331 T3332 compound 1640,media
R2392 T3332 T3329 pobj media,in
R2393 T3333 T3335 punct (,BRL
R2394 T3334 T3335 compound Gibco,BRL
R2395 T3335 T3332 appos BRL,media
R2396 T3336 T3332 punct ),media
R2397 T3337 T3328 punct ",",maintained
R2398 T3338 T3328 conj supplemented,maintained
R2399 T3339 T3338 prep with,supplemented
R2400 T3340 T3342 nummod 2,L-glutamine
R2401 T3341 T3342 compound mM,L-glutamine
R2402 T3342 T3339 pobj L-glutamine,with
R2403 T3343 T3342 punct (,L-glutamine
R2404 T3344 T3345 compound Gibco,BRL
R2405 T3345 T3342 appos BRL,L-glutamine
R2406 T3346 T3342 punct ),L-glutamine
R2407 T3347 T3342 punct ",",L-glutamine
R2408 T3348 T3349 nummod 10,%
R2409 T3349 T3351 compound %,supreme
R2410 T3350 T3351 compound serum,supreme
R2411 T3351 T3342 appos supreme,L-glutamine
R2412 T3352 T3353 punct (,BioWhittaker
R2413 T3353 T3351 appos BioWhittaker,supreme
R2414 T3354 T3353 punct ),BioWhittaker
R2415 T3355 T3351 punct ",",supreme
R2416 T3356 T3360 nummod 200,penicillin
R2417 T3357 T3360 compound µg,penicillin
R2418 T3358 T3360 compound /,penicillin
R2419 T3359 T3360 compound ml,penicillin
R2420 T3360 T3351 conj penicillin,supreme
R2421 T3361 T3360 punct ",",penicillin
R2422 T3362 T3363 nummod 100,µg
R2423 T3363 T3366 nmod µg,streptomycin
R2424 T3364 T3366 nmod /,streptomycin
R2425 T3365 T3366 compound ml,streptomycin
R2426 T3366 T3360 conj streptomycin,penicillin
R2427 T3367 T3366 punct ",",streptomycin
R2428 T3368 T3372 nummod 25,acid
R2429 T3369 T3372 nmod mM,acid
R2430 T3370 T3372 nmod N-2-hydroxyethylpiperazine-N-2-ethane,acid
R2431 T3371 T3372 amod sulphonic,acid
R2432 T3372 T3380 nmod acid,bicarbonate
R2433 T3373 T3374 punct (,HEPES
R2434 T3374 T3372 appos HEPES,acid
R2435 T3375 T3374 punct ),HEPES
R2436 T3376 T3374 cc and,HEPES
R2437 T3377 T3380 nummod 25,bicarbonate
R2438 T3378 T3380 compound mM,bicarbonate
R2439 T3379 T3380 compound sodium,bicarbonate
R2440 T3380 T3366 conj bicarbonate,streptomycin
R2441 T3381 T3342 punct ",",L-glutamine
R2442 T3382 T3338 prep in,supplemented
R2443 T3383 T3384 nummod 5,%
R2444 T3384 T3382 pobj %,in
R2445 T3385 T3391 nummod CO2,atmosphere
R2446 T3386 T3385 cc and,CO2
R2447 T3387 T3388 nummod 95,%
R2448 T3388 T3391 nmod %,atmosphere
R2449 T3389 T3391 amod humidified,atmosphere
R2450 T3390 T3391 compound air,atmosphere
R2451 T3391 T3391 ROOT atmosphere,atmosphere
R2452 T3392 T3391 prep at,atmosphere
R2453 T3393 T3394 nummod 37,°
R2454 T3394 T3396 compound °,Wild-type
R2455 T3395 T3396 compound C.,Wild-type
R2456 T3396 T3392 pobj Wild-type,at
R2457 T3397 T3396 punct (,Wild-type
R2458 T3398 T3401 compound Cebpb,+
R2459 T3399 T3401 compound +,+
R2460 T3400 T3401 compound /,+
R2461 T3401 T3396 appos +,Wild-type
R2462 T3402 T3396 punct ),Wild-type
R2463 T3403 T3391 cc and,atmosphere
R2464 T3404 T3391 conj knockout,atmosphere
R2465 T3405 T3391 punct (,atmosphere
R2466 T3406 T3407 nsubj Cebpb,−
R2467 T3407 T3391 appos −,atmosphere
R2468 T3408 T3409 nummod /,−
R2469 T3409 T3407 appos −,−
R2470 T3410 T3407 punct ),−
R2471 T3411 T3413 nmod mouse,fibroblasts
R2472 T3412 T3413 amod embryonic,fibroblasts
R2473 T3413 T3391 appos fibroblasts,atmosphere
R2474 T3414 T3413 punct (,fibroblasts
R2475 T3415 T3413 appos MEFs,fibroblasts
R2476 T3416 T3413 punct ),fibroblasts
R2477 T3417 T3419 nmod [,]
R2478 T3418 T3419 nummod 34,]
R2479 T3419 T3421 nsubjpass ],grown
R2480 T3420 T3421 auxpass were,grown
R2481 T3421 T3421 ROOT grown,grown
R2482 T3422 T3421 prep in,grown
R2483 T3423 T3428 poss Dulbecco,medium
R2484 T3424 T3423 case 's,Dulbecco
R2485 T3425 T3428 amod modified,medium
R2486 T3426 T3428 poss Eagle,medium
R2487 T3427 T3426 case 's,Eagle
R2488 T3428 T3422 pobj medium,in
R2489 T3429 T3428 punct (,medium
R2490 T3430 T3428 appos Invitrogen,medium
R2491 T3431 T3428 punct ),medium
R2492 T3432 T3421 conj supplemented,grown
R2493 T3433 T3432 prep with,supplemented
R2494 T3434 T3435 nummod 10,%
R2495 T3435 T3438 nmod %,serum
R2496 T3436 T3438 amod fetal,serum
R2497 T3437 T3438 amod bovine,serum
R2498 T3438 T3433 pobj serum,with
R2499 T3439 T3438 cc and,serum
R2500 T3440 T3441 nummod 1,%
R2501 T3441 T3443 nmod %,solution
R2502 T3442 T3443 amod penicillin/streptomycin/glutamate,solution
R2503 T3443 T3438 conj solution,serum
R2504 T3444 T3445 punct (,Cellgro
R2505 T3445 T3443 appos Cellgro,solution
R2506 T3446 T3445 punct ),Cellgro
R2507 T3447 T3421 punct .,grown
R2508 T3448 T3450 amod Primary,macrophages
R2509 T3449 T3450 amod peritoneal,macrophages
R2510 T3450 T3452 nsubjpass macrophages,obtained
R2511 T3451 T3452 auxpass were,obtained
R2512 T3452 T3452 ROOT obtained,obtained
R2513 T3453 T3452 prep by,obtained
R2514 T3454 T3453 pcomp injecting,by
R2515 T3455 T3456 compound C57BL/6,mice
R2516 T3456 T3454 dobj mice,injecting
R2517 T3457 T3454 prep with,injecting
R2518 T3458 T3459 nummod 3,%
R2519 T3459 T3461 nmod %,broth
R2520 T3460 T3461 compound thioglycollate,broth
R2521 T3461 T3457 pobj broth,with
R2522 T3462 T3461 acl followed,broth
R2523 T3463 T3462 agent by,followed
R2524 T3464 T3465 amod peritoneal,lavage
R2525 T3465 T3463 pobj lavage,by
R2526 T3466 T3465 nummod 3,lavage
R2527 T3467 T3468 nummod 5,days
R2528 T3468 T3469 npadvmod days,later
R2529 T3469 T3462 advmod later,followed
R2530 T3470 T3452 punct ",",obtained
R2531 T3471 T3452 cc and,obtained
R2532 T3472 T3452 conj maintained,obtained
R2533 T3473 T3472 prep in,maintained
R2534 T3474 T3475 nummod 50,%
R2535 T3475 T3473 pobj %,in
R2536 T3476 T3477 nummod DMEM/F12,media
R2537 T3477 T3473 pobj media,in
R2538 T3478 T3480 punct (,BRL
R2539 T3479 T3480 compound Gibco,BRL
R2540 T3480 T3472 appos BRL,maintained
R2541 T3481 T3480 punct ),BRL
R2542 T3482 T3452 punct .,obtained
R2543 T3483 T3485 nsubjpass Precautions,taken
R2544 T3484 T3485 auxpass were,taken
R2545 T3485 T3485 ROOT taken,taken
R2546 T3486 T3487 aux to,exclude
R2547 T3487 T3485 advcl exclude,taken
R2548 T3488 T3490 amod bacterial,contamination
R2549 T3489 T3490 compound lipopolysaccharide,contamination
R2550 T3490 T3487 dobj contamination,exclude
R2551 T3491 T3490 prep from,contamination
R2552 T3492 T3494 det all,cultures
R2553 T3493 T3494 compound cell,cultures
R2554 T3494 T3491 pobj cultures,from
R2555 T3495 T3487 prep through,exclude
R2556 T3496 T3497 det the,use
R2557 T3497 T3495 pobj use,through
R2558 T3498 T3497 prep of,use
R2559 T3499 T3501 amod certified,serum
R2560 T3500 T3501 amod LPS-free,serum
R2561 T3501 T3498 pobj serum,of
R2562 T3502 T3485 punct .,taken
R2563 T3503 T3504 compound Cell,viability
R2564 T3504 T3506 nsubjpass viability,determined
R2565 T3505 T3506 auxpass was,determined
R2566 T3506 T3506 ROOT determined,determined
R2567 T3507 T3506 advcl using,determined
R2568 T3508 T3510 det the,blue
R2569 T3509 T3510 compound trypan,blue
R2570 T3510 T3516 nmod blue,method
R2571 T3511 T3510 punct (,blue
R2572 T3512 T3510 appos Sigma,blue
R2573 T3513 T3510 punct ),blue
R2574 T3514 T3515 compound dye,exclusion
R2575 T3515 T3516 compound exclusion,method
R2576 T3516 T3507 dobj method,using
R2577 T3517 T3506 punct .,determined
R2578 T3518 T3519 det All,cultures
R2579 T3519 T3522 nsubjpass cultures,checked
R2580 T3520 T3522 auxpass were,checked
R2581 T3521 T3522 advmod routinely,checked
R2582 T3522 T3522 ROOT checked,checked
R2583 T3523 T3524 aux to,exclude
R2584 T3524 T3522 xcomp exclude,checked
R2585 T3525 T3526 compound Mycoplasma,infection
R2586 T3526 T3524 dobj infection,exclude
R2587 T3527 T3526 prep by,infection
R2588 T3528 T3529 amod nuclear,staining
R2589 T3529 T3527 pobj staining,by
R2590 T3530 T3524 advcl using,exclude
R2591 T3531 T3532 nsubj Hoechst,stain
R2592 T3532 T3530 xcomp stain,using
R2593 T3533 T3535 nummod 33258,Sigma
R2594 T3534 T3535 punct (,Sigma
R2595 T3535 T3524 npadvmod Sigma,exclude
R2596 T3536 T3535 punct ),Sigma
R2597 T3537 T3535 cc and,Sigma
R2598 T3538 T3541 det the,Kit
R2599 T3539 T3541 compound MycoAlert,Kit
R2600 T3540 T3541 compound Detection,Kit
R2601 T3541 T3535 conj Kit,Sigma
R2602 T3542 T3541 punct (,Kit
R2603 T3543 T3541 appos Lonza,Kit
R2604 T3544 T3541 punct ),Kit
R2605 T3545 T3522 punct .,checked
R2606 T3546 T3547 amod Bacterial,lipopolysaccharide
R2607 T3547 T3558 nsubjpass lipopolysaccharide,obtained
R2608 T3548 T3549 punct (,LPS
R2609 T3549 T3547 appos LPS,lipopolysaccharide
R2610 T3550 T3547 punct ),lipopolysaccharide
R2611 T3551 T3555 punct (,Re595
R2612 T3552 T3555 compound Salmonella,Re595
R2613 T3553 T3555 compound minnesota,Re595
R2614 T3554 T3555 compound Strain,Re595
R2615 T3555 T3547 appos Re595,lipopolysaccharide
R2616 T3556 T3555 punct ),Re595
R2617 T3557 T3558 auxpass was,obtained
R2618 T3558 T3558 ROOT obtained,obtained
R2619 T3559 T3558 prep from,obtained
R2620 T3560 T3559 pobj Sigma,from
R2621 T3561 T3558 punct .,obtained

2_test

Id Subject Object Predicate Lexical cue
23472114-12048245-87899172 455-457 12048245 denotes 34
T60199 455-457 12048245 denotes 34

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3287 1298-1303 NNP denotes Sigma
T3286 1293-1297 IN denotes from
T3285 1284-1292 VB denotes obtained
T3284 1280-1283 VB denotes was
T3283 1278-1279 -RRB- denotes )
T3282 1273-1278 NN denotes Re595
T3281 1266-1272 NN denotes Strain
T3280 1256-1265 NN denotes minnesota
T3279 1245-1255 NN denotes Salmonella
T3278 1244-1245 -LRB- denotes (
T3277 1242-1243 -RRB- denotes )
T3276 1239-1242 NN denotes LPS
T3275 1238-1239 -LRB- denotes (
T3274 1219-1237 NN denotes lipopolysaccharide
T3273 1209-1218 JJ denotes Bacterial
T3272 1206-1207 -RRB- denotes )
T3271 1201-1206 NN denotes Lonza
T3270 1200-1201 -LRB- denotes (
T3269 1196-1199 NN denotes Kit
T3268 1186-1195 NNP denotes Detection
T3267 1176-1185 NNP denotes MycoAlert
T3266 1172-1175 DT denotes the
T3265 1168-1171 CC denotes and
T3264 1166-1167 -RRB- denotes )
T3263 1161-1166 NN denotes Sigma
T3262 1160-1161 -LRB- denotes (
T3261 1154-1159 CD denotes 33258
T3260 1148-1153 NN denotes stain
T3259 1140-1147 NNP denotes Hoechst
T3258 1134-1139 VB denotes using
T3257 1125-1133 NN denotes staining
T3256 1117-1124 JJ denotes nuclear
T3255 1114-1116 IN denotes by
T3254 1104-1113 NN denotes infection
T3253 1093-1103 NN denotes Mycoplasma
T3252 1085-1092 VB denotes exclude
T3251 1082-1084 TO denotes to
T3250 1074-1081 VB denotes checked
T3249 1064-1073 RB denotes routinely
T3248 1059-1063 VB denotes were
T3247 1050-1058 NN denotes cultures
T3246 1046-1049 DT denotes All
T3245 1038-1044 NN denotes method
T3244 1028-1037 NN denotes exclusion
T3243 1024-1027 NN denotes dye
T3242 1022-1023 -RRB- denotes )
T3241 1017-1022 NN denotes Sigma
T3240 1016-1017 -LRB- denotes (
T3239 1011-1015 JJ denotes blue
T3238 1004-1010 NN denotes trypan
T3237 1000-1003 DT denotes the
T3236 994-999 VB denotes using
T3235 983-993 VB denotes determined
T3234 979-982 VB denotes was
T3233 969-978 NN denotes viability
T3232 964-968 NN denotes Cell
T3231 957-962 NN denotes serum
T3230 948-956 JJ denotes LPS-free
T3229 938-947 VB denotes certified
T3228 935-937 IN denotes of
T3227 931-934 NN denotes use
T3226 927-930 DT denotes the
T3225 919-926 IN denotes through
T3224 910-918 NN denotes cultures
T3223 905-909 NN denotes cell
T3222 901-904 DT denotes all
T3221 896-900 IN denotes from
T3220 882-895 NN denotes contamination
T3219 863-881 NN denotes lipopolysaccharide
T3218 853-862 JJ denotes bacterial
T3217 845-852 VB denotes exclude
T3216 842-844 TO denotes to
T3215 836-841 VB denotes taken
T3214 831-835 VB denotes were
T3213 819-830 NN denotes Precautions
T3212 816-817 -RRB- denotes )
T3211 813-816 NNP denotes BRL
T3210 807-812 NNP denotes Gibco
T3209 806-807 -LRB- denotes (
T3208 800-805 NN denotes media
T3207 791-799 NN denotes DMEM/F12
T3206 789-790 NN denotes %
T3205 787-789 CD denotes 50
T3204 784-786 IN denotes in
T3203 773-783 VB denotes maintained
T3202 769-772 CC denotes and
T3201 767-768 -COMMA- denotes ,
T3200 762-767 RB denotes later
T3199 757-761 NN denotes days
T3198 753-756 CD denotes 3–5
T3197 746-752 NN denotes lavage
T3196 735-745 JJ denotes peritoneal
T3195 732-734 IN denotes by
T3194 723-731 VB denotes followed
T3193 717-722 NN denotes broth
T3192 702-716 NN denotes thioglycollate
T3191 700-701 NN denotes %
T3190 699-700 CD denotes 3
T3189 694-698 IN denotes with
T3188 689-693 NN denotes mice
T3187 681-688 NN denotes C57BL/6
T3186 671-680 VB denotes injecting
T3185 668-670 IN denotes by
T3184 659-667 VB denotes obtained
T3183 654-658 VB denotes were
T3182 642-653 NN denotes macrophages
T3181 631-641 JJ denotes peritoneal
T3180 623-630 JJ denotes Primary
R2266 T3182 T3180 arg1Of macrophages,Primary
R2267 T3182 T3181 arg1Of macrophages,peritoneal
R2268 T3182 T3183 arg1Of macrophages,were
R2269 T3182 T3184 arg2Of macrophages,obtained
R2270 T3182 T3203 arg1Of macrophages,maintained
R2271 T3184 T3183 arg2Of obtained,were
R2272 T3184 T3185 arg1Of obtained,by
R2273 T3184 T3202 arg1Of obtained,and
R2274 T3186 T3185 arg2Of injecting,by
R2275 T3188 T3186 arg2Of mice,injecting
R2276 T3188 T3187 arg1Of mice,C57BL/6
R2277 T3188 T3189 arg1Of mice,with
R2278 T3190 T3191 arg1Of 3,%
R2279 T3193 T3189 arg2Of broth,with
R2280 T3193 T3190 arg1Of broth,3
R2281 T3193 T3192 arg1Of broth,thioglycollate
R2282 T3193 T3194 arg2Of broth,followed
R2283 T3194 T3200 arg1Of followed,later
R2284 T3197 T3194 arg1Of lavage,followed
R2285 T3197 T3195 arg2Of lavage,by
R2286 T3197 T3196 arg1Of lavage,peritoneal
R2287 T3199 T3198 arg1Of days,3–5
R2288 T3200 T3199 arg1Of later,days
R2289 T3202 T3201 arg1Of and,","
R2290 T3203 T3202 arg2Of maintained,and
R2291 T3203 T3204 arg1Of maintained,in
R2292 T3205 T3206 arg1Of 50,%
R2293 T3208 T3204 arg2Of media,in
R2294 T3208 T3205 arg1Of media,50
R2295 T3208 T3207 arg1Of media,DMEM/F12
R2296 T3208 T3209 arg1Of media,(
R2297 T3211 T3209 arg2Of BRL,(
R2298 T3211 T3210 arg1Of BRL,Gibco
R2299 T3212 T3209 arg3Of ),(
R2300 T3213 T3214 arg1Of Precautions,were
R2301 T3213 T3215 arg2Of Precautions,taken
R2302 T3213 T3217 arg1Of Precautions,exclude
R2303 T3215 T3214 arg2Of taken,were
R2304 T3217 T3215 arg3Of exclude,taken
R2305 T3217 T3216 arg1Of exclude,to
R2306 T3217 T3225 arg1Of exclude,through
R2307 T3220 T3217 arg2Of contamination,exclude
R2308 T3220 T3218 arg1Of contamination,bacterial
R2309 T3220 T3219 arg1Of contamination,lipopolysaccharide
R2310 T3220 T3221 arg1Of contamination,from
R2311 T3224 T3221 arg2Of cultures,from
R2312 T3224 T3222 arg1Of cultures,all
R2313 T3224 T3223 arg1Of cultures,cell
R2314 T3227 T3225 arg2Of use,through
R2315 T3227 T3226 arg1Of use,the
R2316 T3227 T3228 arg1Of use,of
R2317 T3231 T3228 arg2Of serum,of
R2318 T3231 T3229 arg2Of serum,certified
R2319 T3231 T3230 arg1Of serum,LPS-free
R2320 T3233 T3232 arg1Of viability,Cell
R2321 T3233 T3234 arg1Of viability,was
R2322 T3233 T3235 arg2Of viability,determined
R2323 T3235 T3234 arg2Of determined,was
R2324 T3236 T3235 arg3Of using,determined
R2325 T3241 T3240 arg2Of Sigma,(
R2326 T3242 T3240 arg3Of ),(
R2327 T3245 T3236 arg2Of method,using
R2328 T3245 T3237 arg1Of method,the
R2329 T3245 T3238 arg1Of method,trypan
R2330 T3245 T3239 arg1Of method,blue
R2331 T3245 T3240 arg1Of method,(
R2332 T3245 T3243 arg1Of method,dye
R2333 T3245 T3244 arg1Of method,exclusion
R2334 T3247 T3246 arg1Of cultures,All
R2335 T3247 T3248 arg1Of cultures,were
R2336 T3247 T3250 arg2Of cultures,checked
R2337 T3250 T3248 arg2Of checked,were
R2338 T3250 T3249 arg1Of checked,routinely
R2339 T3250 T3251 modOf checked,to
R2340 T3252 T3251 arg1Of exclude,to
R2341 T3254 T3252 arg2Of infection,exclude
R2342 T3254 T3253 arg1Of infection,Mycoplasma
R2343 T3254 T3255 arg1Of infection,by
R2344 T3257 T3256 arg1Of staining,nuclear
R2345 T3257 T3258 arg1Of staining,using
R2346 T3257 T3265 arg1Of staining,and
R2347 T3260 T3258 arg2Of stain,using
R2348 T3260 T3259 arg1Of stain,Hoechst
R2349 T3260 T3261 arg1Of stain,33258
R2350 T3260 T3262 arg1Of stain,(
R2351 T3263 T3262 arg2Of Sigma,(
R2352 T3264 T3262 arg3Of ),(
R2353 T3265 T3255 arg2Of and,by
R2354 T3268 T3267 arg1Of Detection,MycoAlert
R2355 T3269 T3265 arg2Of Kit,and
R2356 T3269 T3266 arg1Of Kit,the
R2357 T3269 T3268 arg1Of Kit,Detection
R2358 T3269 T3270 arg1Of Kit,(
R2359 T3271 T3270 arg2Of Lonza,(
R2360 T3272 T3270 arg3Of ),(
R2361 T3274 T3273 arg1Of lipopolysaccharide,Bacterial
R2362 T3274 T3275 arg1Of lipopolysaccharide,(
R2363 T3274 T3278 arg1Of lipopolysaccharide,(
R2364 T3274 T3284 arg1Of lipopolysaccharide,was
R2365 T3274 T3285 arg2Of lipopolysaccharide,obtained
R2366 T3276 T3275 arg2Of LPS,(
R2367 T3277 T3275 arg3Of ),(
R2368 T3282 T3278 arg2Of Re595,(
R2369 T3282 T3279 arg1Of Re595,Salmonella
R2370 T3282 T3280 arg1Of Re595,minnesota
R2371 T3282 T3281 arg1Of Re595,Strain
R2372 T3283 T3278 arg3Of ),(
R2373 T3285 T3284 arg2Of obtained,was
R2374 T3285 T3286 arg1Of obtained,from
R2375 T3287 T3286 arg2Of Sigma,from

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3170 409-414 Protein denotes Cebpb
T3169 385-390 Protein denotes Cebpb

UBERON-AE

Id Subject Object Predicate Lexical cue
T3158 957-962 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T3157 556-561 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T3156 148-153 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-CC

Id Subject Object Predicate Lexical cue
T3173 964-968 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

sentences

Id Subject Object Predicate Lexical cue
T3165 1209-1304 Sentence denotes Bacterial lipopolysaccharide (LPS) (Salmonella minnesota Strain Re595) was obtained from Sigma.
T3164 1046-1208 Sentence denotes All cultures were routinely checked to exclude Mycoplasma infection by nuclear staining using Hoechst stain 33258 (Sigma) and the MycoAlert Detection Kit (Lonza).
T3163 964-1045 Sentence denotes Cell viability was determined using the trypan blue (Sigma) dye exclusion method.
T3162 819-963 Sentence denotes Precautions were taken to exclude bacterial lipopolysaccharide contamination from all cell cultures through the use of certified LPS-free serum.
T3161 623-818 Sentence denotes Primary peritoneal macrophages were obtained by injecting C57BL/6 mice with 3% thioglycollate broth followed by peritoneal lavage 3–5 days later, and maintained in 50% DMEM/F12 media (Gibco BRL).
T3160 0-622 Sentence denotes Murine macrophage RAW 264.7 cells (ATCC TIB-71) were maintained in RPMI 1640 media (Gibco BRL), supplemented with 2 mM L-glutamine (Gibco BRL), 10% serum supreme (BioWhittaker), 200 µg/ml penicillin, 100 µg/ml streptomycin, 25 mM N-2-hydroxyethylpiperazine-N-2-ethane sulphonic acid (HEPES) and 25 mM sodium bicarbonate, in 5% CO2 and 95% humidified air atmosphere at 37°C. Wild-type (Cebpb+/+) and knockout (Cebpb−/−) mouse embryonic fibroblasts (MEFs) [34] were grown in Dulbecco's modified Eagle's medium (Invitrogen) supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin/glutamate solution (Cellgro).
T35 0-373 Sentence denotes Murine macrophage RAW 264.7 cells (ATCC TIB-71) were maintained in RPMI 1640 media (Gibco BRL), supplemented with 2 mM L-glutamine (Gibco BRL), 10% serum supreme (BioWhittaker), 200 µg/ml penicillin, 100 µg/ml streptomycin, 25 mM N-2-hydroxyethylpiperazine-N-2-ethane sulphonic acid (HEPES) and 25 mM sodium bicarbonate, in 5% CO2 and 95% humidified air atmosphere at 37°C.
T36 374-622 Sentence denotes Wild-type (Cebpb+/+) and knockout (Cebpb−/−) mouse embryonic fibroblasts (MEFs) [34] were grown in Dulbecco's modified Eagle's medium (Invitrogen) supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin/glutamate solution (Cellgro).
T37 623-818 Sentence denotes Primary peritoneal macrophages were obtained by injecting C57BL/6 mice with 3% thioglycollate broth followed by peritoneal lavage 3–5 days later, and maintained in 50% DMEM/F12 media (Gibco BRL).
T38 819-963 Sentence denotes Precautions were taken to exclude bacterial lipopolysaccharide contamination from all cell cultures through the use of certified LPS-free serum.
T39 964-1045 Sentence denotes Cell viability was determined using the trypan blue (Sigma) dye exclusion method.
T40 1046-1208 Sentence denotes All cultures were routinely checked to exclude Mycoplasma infection by nuclear staining using Hoechst stain 33258 (Sigma) and the MycoAlert Detection Kit (Lonza).
T41 1209-1304 Sentence denotes Bacterial lipopolysaccharide (LPS) (Salmonella minnesota Strain Re595) was obtained from Sigma.

ICD10

Id Subject Object Predicate Lexical cue
T3171 1093-1113 http://purl.bioontology.org/ontology/ICD10/A49.3 denotes Mycoplasma infection

simple1

Id Subject Object Predicate Lexical cue
T3175 409-414 Protein denotes Cebpb
T3174 385-390 Protein denotes Cebpb

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T3289 409-414 Protein denotes Cebpb
T3288 385-390 Protein denotes Cebpb

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3295 409-414 Protein denotes Cebpb
T3294 385-390 Protein denotes Cebpb

DLUT931

Id Subject Object Predicate Lexical cue
T3291 409-414 Protein denotes Cebpb
T3290 385-390 Protein denotes Cebpb

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T3315 623-752 Binding denotes Primary peritoneal macrophages were obtained by injecting C57BL/6 mice with 3% thioglycollate broth followed by peritoneal lavage
T3314 1085-1133 Regulation denotes exclude Mycoplasma infection by nuclear staining
T3313 569-579 Entity denotes penicillin
T3312 964-978 Entity denotes Cell viability
T3311 1017-1022 Protein denotes Sigma
T3310 623-653 Entity denotes Primary peritoneal macrophages
T3309 1004-1023 Entity denotes trypan blue (Sigma)
T3308 580-592 Entity denotes streptomycin
T3307 1209-1243 Entity denotes Bacterial lipopolysaccharide (LPS)
T3306 948-956 Entity denotes LPS-free
T3305 796-799 Protein denotes F12
T3304 807-816 Protein denotes Gibco BRL
T3303 569-602 Entity denotes penicillin/streptomycin/glutamate
T3302 1239-1242 Entity denotes LPS
T3301 702-716 Entity denotes thioglycollate
T3300 1186-1207 Protein denotes Detection Kit (Lonza)
T3299 863-881 Entity denotes lipopolysaccharide
T3298 1298-1303 Protein denotes Sigma
T3297 569-602 Entity denotes penicillin/streptomycin/glutamate
T3296 1161-1166 Protein denotes Sigma

testone

Id Subject Object Predicate Lexical cue
T3151 409-414 Protein denotes Cebpb
T3150 385-390 Protein denotes Cebpb

test3

Id Subject Object Predicate Lexical cue
T3155 409-414 Protein denotes Cebpb
T3154 385-390 Protein denotes Cebpb
T3153 409-414 Protein denotes Cebpb
T3152 385-390 Protein denotes Cebpb