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PMC:3589482 / 535-816 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 82-90 NN denotes promoter
T855 73-81 CD denotes SerpinB2
T854 59-72 JJ denotes LPS-regulated
T853 55-58 DT denotes the
T852 51-54 VB denotes map
T851 48-50 TO denotes To
T850 46-47 . denotes .
T849 35-46 NNS denotes macrophages
T848 28-34 JJ denotes murine
T847 25-27 IN denotes in
T846 21-24 NNS denotes hrs
T845 18-20 CD denotes 24
T844 15-17 IN denotes of
T843 8-14 NN denotes period
T842 6-7 DT denotes a
T841 1-5 IN denotes over
T891 272-280 VBD denotes compared
T890 269-271 PRP denotes we
T889 267-268 , denotes ,
T888 259-267 NN denotes addition
T887 256-258 IN denotes In
T886 254-255 . denotes .
T885 243-254 NNS denotes macrophages
T884 236-242 JJ denotes murine
T883 231-235 IN denotes into
T882 223-230 NNS denotes mutants
T881 214-222 NN denotes deletion
T880 206-213 JJ denotes several
T879 202-205 CC denotes and
T878 197-201 NN denotes gene
T877 188-196 NNP denotes SerpinB2
T876 181-187 NN denotes murine
T875 177-180 DT denotes the
T874 174-176 IN denotes of
T873 167-173 NN denotes region
T872 158-166 VBG denotes flanking
T871 157-158 : denotes -
T870 156-157 '' denotes '
T869 155-156 CD denotes 5
T868 152-154 NN denotes kb
T867 150-151 CD denotes 5
T866 149-150 NN denotes ∼
T865 145-148 DT denotes the
T864 142-144 IN denotes by
T863 135-141 VBN denotes driven
T862 124-134 NNS denotes constructs
T861 115-123 NN denotes reporter
T860 103-114 VBD denotes transfected
T859 100-102 PRP denotes we
T858 98-99 , denotes ,
T857 91-98 NNS denotes regions
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected
R448 T861 T862 compound reporter,constructs
R449 T862 T860 dobj constructs,transfected
R450 T863 T862 acl driven,constructs
R451 T864 T863 agent by,driven
R452 T865 T873 det the,region
R453 T866 T868 nmod ∼,kb
R454 T867 T866 nummod 5,∼
R455 T868 T872 meta kb,flanking
R456 T869 T868 nummod 5,kb
R457 T870 T869 punct ',5
R458 T871 T872 punct -,flanking
R459 T872 T873 amod flanking,region
R460 T873 T864 pobj region,by
R461 T874 T873 prep of,region
R462 T875 T878 det the,gene
R463 T876 T878 compound murine,gene
R464 T877 T878 compound SerpinB2,gene
R465 T878 T874 pobj gene,of
R466 T879 T878 cc and,gene
R467 T880 T882 amod several,mutants
R468 T881 T882 compound deletion,mutants
R469 T882 T878 conj mutants,gene
R470 T883 T863 prep into,driven
R471 T884 T885 amod murine,macrophages
R472 T885 T883 pobj macrophages,into
R473 T886 T860 punct .,transfected
R474 T887 T891 prep In,compared
R475 T888 T887 pobj addition,In
R476 T889 T891 punct ",",compared
R477 T890 T891 nsubj we,compared
R478 T891 T891 ROOT compared,compared

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 18-20 CD denotes 24
T306 15-17 IN denotes of
T305 8-14 NN denotes period
T304 6-7 DT denotes a
T303 1-5 IN denotes over
T347 272-280 VB denotes compared
T346 269-271 PRP denotes we
T345 267-268 -COMMA- denotes ,
T344 259-267 NN denotes addition
T343 256-258 IN denotes In
T342 243-254 NN denotes macrophages
T341 236-242 JJ denotes murine
T340 231-235 IN denotes into
T339 223-230 NN denotes mutants
T338 214-222 NN denotes deletion
T337 206-213 JJ denotes several
T336 202-205 CC denotes and
T335 197-201 NN denotes gene
T334 188-196 NN denotes SerpinB2
T333 181-187 JJ denotes murine
T332 177-180 DT denotes the
T331 174-176 IN denotes of
T330 167-173 NN denotes region
T329 155-166 JJ denotes 5'-flanking
T328 152-154 NN denotes kb
T327 149-151 CD denotes ∼5
T326 145-148 DT denotes the
T325 142-144 IN denotes by
T324 135-141 VB denotes driven
T323 124-134 NN denotes constructs
T322 115-123 NN denotes reporter
T321 103-114 VB denotes transfected
T320 100-102 PRP denotes we
T319 98-99 -COMMA- denotes ,
T318 91-98 NN denotes regions
T317 82-90 NN denotes promoter
T316 73-81 NN denotes SerpinB2
T315 59-72 JJ denotes LPS-regulated
T314 55-58 DT denotes the
T313 51-54 VB denotes map
T312 48-50 TO denotes To
T311 35-46 NN denotes macrophages
T310 28-34 JJ denotes murine
T309 25-27 IN denotes in
T308 21-24 NN denotes hrs
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","
R133 T323 T321 arg2Of constructs,transfected
R134 T323 T322 arg1Of constructs,reporter
R135 T323 T324 arg2Of constructs,driven
R136 T330 T324 arg1Of region,driven
R137 T330 T325 arg2Of region,by
R138 T330 T326 arg1Of region,the
R139 T330 T327 arg1Of region,∼5
R140 T330 T328 arg1Of region,kb
R141 T330 T329 arg1Of region,5'-flanking
R142 T330 T331 arg1Of region,of
R143 T330 T340 arg1Of region,into
R144 T335 T332 arg1Of gene,the
R145 T335 T333 arg1Of gene,murine
R146 T335 T334 arg1Of gene,SerpinB2
R147 T335 T336 arg1Of gene,and
R148 T336 T331 arg2Of and,of
R149 T339 T336 arg2Of mutants,and
R150 T339 T337 arg1Of mutants,several
R151 T339 T338 arg1Of mutants,deletion
R152 T342 T340 arg2Of macrophages,into
R153 T342 T341 arg1Of macrophages,murine
R154 T344 T343 arg2Of addition,In
R155 T346 T347 arg1Of we,compared

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T165 73-81 Protein denotes SerpinB2
T166 188-196 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T532 73-81 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T533 188-196 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T102 48-255 Sentence denotes To map the LPS-regulated SerpinB2 promoter regions, we transfected reporter constructs driven by the ∼5 kb 5'-flanking region of the murine SerpinB2 gene and several deletion mutants into murine macrophages.
T6 48-255 Sentence denotes To map the LPS-regulated SerpinB2 promoter regions, we transfected reporter constructs driven by the ∼5 kb 5'-flanking region of the murine SerpinB2 gene and several deletion mutants into murine macrophages.

simple1

Id Subject Object Predicate Lexical cue
T218 73-81 Protein denotes SerpinB2
T219 188-196 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T500 73-81 Protein denotes SerpinB2
T499 188-196 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T609 188-196 Protein denotes SerpinB2
T610 73-81 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T575 188-196 Protein denotes SerpinB2
T576 73-81 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 18-46 Localization denotes 24 hrs in murine macrophages
T753 188-196 Protein denotes SerpinB2
T719 18-46 Protein denotes 24 hrs in murine macrophages
T720 73-81 Protein denotes SerpinB2
T724 28-46 Entity denotes murine macrophages
T726 236-254 Entity denotes murine macrophages
T729 55-99 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T741 59-72 Entity denotes LPS-regulated
T743 174-201 Protein denotes of the murine SerpinB2 gene
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T649 181-201 Protein denotes murine SerpinB2 gene
T648 73-90 Protein denotes SerpinB2 promoter

testone

Id Subject Object Predicate Lexical cue
T29 188-196 Protein denotes SerpinB2
T28 73-81 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T80 188-196 Protein denotes SerpinB2
T79 73-81 Protein denotes SerpinB2
T58 188-196 Protein denotes SerpinB2
T57 73-81 Protein denotes SerpinB2