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PMC:3589482 / 4773-5014 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3067 234-235 NN denotes β
T3066 233-234 : denotes -
T3065 228-233 SYM denotes C/EBP
T3064 226-227 . denotes .
T3063 223-226 CD denotes 195
T3062 222-223 NN denotes −
T3061 221-222 NN denotes /
T3060 218-221 CD denotes 203
T3059 217-218 CD denotes −
T3058 214-216 IN denotes at
T3057 209-213 NN denotes site
T3056 201-208 JJ denotes binding
T3055 195-200 NNP denotes C/EBP
T3054 193-194 DT denotes a
T3053 188-192 IN denotes upon
T3052 178-187 JJ denotes dependent
T3051 167-177 RB denotes critically
T3050 164-166 VBZ denotes is
T3049 160-163 CC denotes and
T3048 158-159 , denotes ,
T3047 150-158 NN denotes promoter
T3046 141-149 NNP denotes SerpinB2
T3045 134-140 NN denotes murine
T3044 130-133 DT denotes the
T3043 127-129 IN denotes of
T3042 123-126 CD denotes 539
T3041 122-123 CD denotes −
T3040 118-121 CC denotes and
T3039 114-117 CD denotes 189
T3038 113-114 VBP denotes −
T3037 101-112 NNS denotes nucleotides
T3036 93-100 IN denotes between
T3035 86-92 NN denotes region
T3034 82-85 DT denotes the
T3033 79-81 IN denotes in
T3032 69-78 NNS denotes sequences
T3031 58-68 JJ denotes regulatory
T3030 47-57 JJ denotes cis-acting
T3029 42-46 IN denotes upon
T3028 32-41 JJ denotes dependent
T3027 29-31 VBZ denotes is
T3026 20-28 NNP denotes SerpinB2
T3025 17-19 IN denotes of
T3024 7-16 NN denotes induction
T3023 3-6 NNP denotes LPS
R2122 T3024 T3027 nsubj induction,is
R2127 T3025 T3024 prep of,induction
R2131 T3026 T3025 pobj SerpinB2,of
R2140 T3028 T3027 acomp dependent,is
R2144 T3029 T3028 prep upon,dependent
R2147 T3030 T3032 amod cis-acting,sequences
R2151 T3031 T3032 amod regulatory,sequences
R2155 T3032 T3029 pobj sequences,upon
R2162 T3033 T3032 prep in,sequences
R2167 T3034 T3035 det the,region
R2172 T3035 T3033 pobj region,in
R2176 T3036 T3027 prep between,is
R2178 T3023 T3024 compound LPS,induction
R2179 T3037 T3036 pobj nucleotides,between
R2181 T3039 T3038 dobj 189,−
R2182 T3040 T3039 cc and,189
R2184 T3041 T3039 conj −,189
R2185 T3042 T3039 conj 539,189
R2186 T3043 T3042 prep of,539
R2187 T3044 T3047 det the,promoter
R2188 T3045 T3047 compound murine,promoter
R2189 T3046 T3047 compound SerpinB2,promoter
R2190 T3047 T3043 pobj promoter,of
R2194 T3051 T3052 advmod critically,dependent
R2195 T3052 T3050 acomp dependent,is
R2196 T3053 T3052 prep upon,dependent
R2197 T3054 T3057 det a,site
R2198 T3055 T3057 nmod C/EBP,site
R2199 T3056 T3057 amod binding,site
R2200 T3057 T3053 pobj site,upon
R2201 T3058 T3050 prep at,is
R2202 T3059 T3063 nummod −,195
R2203 T3060 T3062 nummod 203,−
R2204 T3061 T3062 compound /,−
R2205 T3062 T3063 nummod −,195
R2206 T3063 T3058 pobj 195,at
R2208 T3065 T3067 punct C/EBP,β
R2209 T3066 T3067 punct -,β

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1979 228-235 NN denotes C/EBP-β
T1978 217-226 CD denotes −203/−195
T1977 214-216 IN denotes at
T1976 209-213 NN denotes site
T1975 201-208 NN denotes binding
T1974 195-200 NN denotes C/EBP
T1973 193-194 DT denotes a
T1972 188-192 IN denotes upon
T1971 178-187 JJ denotes dependent
T1970 167-177 RB denotes critically
T1969 164-166 VB denotes is
T1968 160-163 CC denotes and
T1967 158-159 -COMMA- denotes ,
T1966 150-158 NN denotes promoter
T1965 141-149 NN denotes SerpinB2
T1964 134-140 JJ denotes murine
T1963 130-133 DT denotes the
T1962 127-129 IN denotes of
T1961 122-126 CD denotes −539
T1960 118-121 CC denotes and
T1959 113-117 CD denotes −189
T1958 101-112 NN denotes nucleotides
T1957 93-100 IN denotes between
T1956 86-92 NN denotes region
T1955 82-85 DT denotes the
T1954 79-81 IN denotes in
T1953 69-78 NN denotes sequences
T1952 58-68 JJ denotes regulatory
T1951 47-57 JJ denotes cis-acting
T1950 42-46 IN denotes upon
T1949 32-41 JJ denotes dependent
T1948 29-31 VB denotes is
T1947 20-28 NN denotes SerpinB2
T1946 17-19 IN denotes of
T1945 7-16 NN denotes induction
T1944 3-6 NN denotes LPS
R1351 T1945 T1944 arg1Of induction,LPS
R1352 T1945 T1946 arg1Of induction,of
R1353 T1945 T1948 arg1Of induction,is
R1354 T1945 T1949 arg1Of induction,dependent
R1355 T1945 T1969 arg1Of induction,is
R1356 T1945 T1971 arg1Of induction,dependent
R1357 T1947 T1946 arg2Of SerpinB2,of
R1358 T1948 T1968 arg1Of is,and
R1359 T1949 T1948 arg2Of dependent,is
R1360 T1949 T1950 arg1Of dependent,upon
R1361 T1953 T1950 arg2Of sequences,upon
R1362 T1953 T1951 arg1Of sequences,cis-acting
R1363 T1953 T1952 arg1Of sequences,regulatory
R1364 T1953 T1954 arg1Of sequences,in
R1365 T1956 T1954 arg2Of region,in
R1366 T1956 T1955 arg1Of region,the
R1367 T1956 T1957 arg1Of region,between
R1368 T1959 T1960 arg1Of −189,and
R1369 T1960 T1957 arg2Of and,between
R1370 T1960 T1958 arg1Of and,nucleotides
R1371 T1960 T1962 arg1Of and,of
R1372 T1961 T1960 arg2Of −539,and
R1373 T1966 T1962 arg2Of promoter,of
R1374 T1966 T1963 arg1Of promoter,the
R1375 T1966 T1964 arg1Of promoter,murine
R1376 T1966 T1965 arg1Of promoter,SerpinB2
R1379 T1968 T1967 arg1Of and,","
R1380 T1969 T1968 arg2Of is,and
R1381 T1969 T1970 arg1Of is,critically
R1382 T1971 T1969 arg2Of dependent,is
R1383 T1971 T1972 arg1Of dependent,upon
R1384 T1976 T1972 arg2Of site,upon
R1385 T1976 T1973 arg1Of site,a
R1386 T1976 T1974 arg1Of site,C/EBP
R1387 T1976 T1975 arg1Of site,binding
R1388 T1976 T1977 arg1Of site,at
R1389 T1978 T1977 arg2Of −203/−195,at

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T1296 195-213 Antecedent denotes C/EBP binding site

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1319 228-235 Protein denotes C/EBP-β
T1318 141-149 Protein denotes SerpinB2
T1317 20-28 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2116 141-149 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T2115 20-28 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T2131 228-235 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-MF

Id Subject Object Predicate Lexical cue
T1380 201-208 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

simple1

Id Subject Object Predicate Lexical cue
T1417 228-235 Protein denotes C/EBP-β
T1416 141-149 Protein denotes SerpinB2
T1415 20-28 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2075 228-235 Protein denotes C/EBP-β
T2074 141-149 Protein denotes SerpinB2
T2073 20-28 Protein denotes SerpinB2
T2095 7-16 Positive_regulation denotes induction
T2094 32-41 Positive_regulation denotes dependent
T2093 178-187 Positive_regulation denotes dependent
R1460 T2073 T2095 themeOf SerpinB2,induction
R1470 T2095 T2094 themeOf induction,dependent
R1471 T2095 T2093 themeOf induction,dependent

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2234 228-235 Protein denotes C/EBP-β
T2233 141-149 Protein denotes SerpinB2
T2232 20-28 Protein denotes SerpinB2
T2253 178-187 Positive_regulation denotes dependent
T2252 7-16 Positive_regulation denotes induction
T2251 32-41 Positive_regulation denotes dependent
R1519 T2232 T2252 themeOf SerpinB2,induction
R1526 T2252 T2251 themeOf induction,dependent
R1527 T2252 T2253 themeOf induction,dependent

DLUT931

Id Subject Object Predicate Lexical cue
T2173 201-208 Binding denotes binding
T2172 32-41 Positive_regulation denotes dependent
T2171 7-16 Positive_regulation denotes induction
T2153 228-235 Protein denotes C/EBP-β
T2152 141-149 Protein denotes SerpinB2
T2151 20-28 Protein denotes SerpinB2
R1486 T2151 T2171 themeOf SerpinB2,induction
R1487 T2151 T2173 themeOf SerpinB2,binding
R1496 T2171 T2172 themeOf induction,dependent

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2480 188-213 Binding denotes upon a C/EBP binding site
T2476 3-57 Regulation denotes LPS induction of SerpinB2 is dependent upon cis-acting
T2475 3-57 Regulation denotes LPS induction of SerpinB2 is dependent upon cis-acting
T2471 3-28 Positive_regulation denotes LPS induction of SerpinB2
T2470 3-28 Gene_expression denotes LPS induction of SerpinB2
T2444 17-28 Protein denotes of SerpinB2
T2434 130-159 Entity denotes the murine SerpinB2 promoter,
T2399 195-200 Protein denotes C/EBP
T2390 3-6 Entity denotes LPS
T2384 42-57 Protein denotes upon cis-acting
T2382 228-235 Protein denotes C/EBP-β
T2376 141-149 Protein denotes SerpinB2
T2374 101-112 Entity denotes nucleotides
T2371 188-213 Entity denotes upon a C/EBP binding site
R1600 T2470 T2475 themeOf LPS induction of SerpinB2,LPS induction of SerpinB2 is dependent upon cis-acting
R1601 T2371 T2480 themeOf upon a C/EBP binding site,upon a C/EBP binding site
R1603 T2471 T2476 themeOf LPS induction of SerpinB2,LPS induction of SerpinB2 is dependent upon cis-acting
R1607 T2390 T2471 causeOf LPS,LPS induction of SerpinB2
R1632 T2434 T2376 partOf "the murine SerpinB2 promoter,",SerpinB2
R1640 T2444 T2470 themeOf of SerpinB2,LPS induction of SerpinB2
R1641 T2444 T2471 themeOf of SerpinB2,LPS induction of SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2310 228-235 Protein denotes C/EBP-β
T2309 178-187 Negative_regulation denotes dependent
T2308 101-112 Gene_expression denotes nucleotides
T2307 32-41 Regulation denotes dependent
T2306 7-16 Positive_regulation denotes induction
T2305 195-200 Protein denotes C/EBP
T2304 134-158 Protein denotes murine SerpinB2 promoter
T2303 20-28 Protein denotes SerpinB2
R1573 T2303 T2306 themeOf SerpinB2,induction
R1575 T2304 T2308 themeOf murine SerpinB2 promoter,nucleotides
R1576 T2306 T2307 themeOf induction,dependent
R1581 T2306 T2309 themeOf induction,dependent

testone

Id Subject Object Predicate Lexical cue
T1128 7-16 Positive_regulation denotes induction
T1114 228-235 Protein denotes C/EBP-β
T1113 141-149 Protein denotes SerpinB2
T1112 20-28 Protein denotes SerpinB2
R750 T1112 T1128 themeOf SerpinB2,induction

test3

Id Subject Object Predicate Lexical cue
T1187 228-235 Protein denotes C/EBP-β
T1186 141-149 Protein denotes SerpinB2
T1185 32-41 Regulation denotes dependent
T1184 20-28 Protein denotes SerpinB2
T1183 7-16 Positive_regulation denotes induction
T1155 228-235 Protein denotes C/EBP-β
T1154 141-149 Protein denotes SerpinB2
T1153 20-28 Protein denotes SerpinB2
R761 T1183 T1185 themeOf induction,dependent
R762 T1184 T1183 themeOf SerpinB2,induction