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PMC:3589482 / 4758-5000 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3064 241-242 . denotes .
T3063 238-241 CD denotes 195
T3062 237-238 NN denotes −
T3061 236-237 NN denotes /
T3060 233-236 CD denotes 203
T3059 232-233 CD denotes −
T3058 229-231 IN denotes at
T3057 224-228 NN denotes site
T3056 216-223 JJ denotes binding
T3055 210-215 NNP denotes C/EBP
T3054 208-209 DT denotes a
T3053 203-207 IN denotes upon
T3052 193-202 JJ denotes dependent
T3051 182-192 RB denotes critically
T3050 179-181 VBZ denotes is
T3049 175-178 CC denotes and
T3048 173-174 , denotes ,
T3047 165-173 NN denotes promoter
T3046 156-164 NNP denotes SerpinB2
T3045 149-155 NN denotes murine
T3044 145-148 DT denotes the
T3043 142-144 IN denotes of
T3042 138-141 CD denotes 539
T3041 137-138 CD denotes −
T3040 133-136 CC denotes and
T3039 129-132 CD denotes 189
T3038 128-129 VBP denotes −
T3037 116-127 NNS denotes nucleotides
T3036 108-115 IN denotes between
T3035 101-107 NN denotes region
T3034 97-100 DT denotes the
T3033 94-96 IN denotes in
T3032 84-93 NNS denotes sequences
T3031 73-83 JJ denotes regulatory
T3030 62-72 JJ denotes cis-acting
T3029 57-61 IN denotes upon
T3028 47-56 JJ denotes dependent
T3027 44-46 VBZ denotes is
T3026 35-43 NNP denotes SerpinB2
T3025 32-34 IN denotes of
T3024 22-31 NN denotes induction
T3023 18-21 NNP denotes LPS
T3022 13-17 IN denotes that
T3021 8-12 VBP denotes show
T3020 5-7 PRP denotes we
T3019 0-4 RB denotes Here
R2122 T3024 T3027 nsubj induction,is
R2127 T3025 T3024 prep of,induction
R2131 T3026 T3025 pobj SerpinB2,of
R2135 T3027 T3021 ccomp is,show
R2140 T3028 T3027 acomp dependent,is
R2144 T3029 T3028 prep upon,dependent
R2147 T3030 T3032 amod cis-acting,sequences
R2151 T3031 T3032 amod regulatory,sequences
R2155 T3032 T3029 pobj sequences,upon
R2162 T3033 T3032 prep in,sequences
R2167 T3034 T3035 det the,region
R2172 T3035 T3033 pobj region,in
R2173 T3019 T3021 advmod Here,show
R2174 T3020 T3021 nsubj we,show
R2175 T3021 T3021 ROOT show,show
R2176 T3036 T3027 prep between,is
R2177 T3022 T3027 mark that,is
R2178 T3023 T3024 compound LPS,induction
R2179 T3037 T3036 pobj nucleotides,between
R2180 T3038 T3021 conj −,show
R2181 T3039 T3038 dobj 189,−
R2182 T3040 T3039 cc and,189
R2184 T3041 T3039 conj −,189
R2185 T3042 T3039 conj 539,189
R2186 T3043 T3042 prep of,539
R2187 T3044 T3047 det the,promoter
R2188 T3045 T3047 compound murine,promoter
R2189 T3046 T3047 compound SerpinB2,promoter
R2190 T3047 T3043 pobj promoter,of
R2191 T3048 T3021 punct ",",show
R2192 T3049 T3021 cc and,show
R2193 T3050 T3021 conj is,show
R2194 T3051 T3052 advmod critically,dependent
R2195 T3052 T3050 acomp dependent,is
R2196 T3053 T3052 prep upon,dependent
R2197 T3054 T3057 det a,site
R2198 T3055 T3057 nmod C/EBP,site
R2199 T3056 T3057 amod binding,site
R2200 T3057 T3053 pobj site,upon
R2201 T3058 T3050 prep at,is
R2202 T3059 T3063 nummod −,195
R2203 T3060 T3062 nummod 203,−
R2204 T3061 T3062 compound /,−
R2205 T3062 T3063 nummod −,195
R2206 T3063 T3058 pobj 195,at
R2207 T3064 T3021 punct .,show

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1978 232-241 CD denotes −203/−195
T1977 229-231 IN denotes at
T1976 224-228 NN denotes site
T1975 216-223 NN denotes binding
T1974 210-215 NN denotes C/EBP
T1973 208-209 DT denotes a
T1972 203-207 IN denotes upon
T1971 193-202 JJ denotes dependent
T1970 182-192 RB denotes critically
T1969 179-181 VB denotes is
T1968 175-178 CC denotes and
T1967 173-174 -COMMA- denotes ,
T1966 165-173 NN denotes promoter
T1965 156-164 NN denotes SerpinB2
T1964 149-155 JJ denotes murine
T1963 145-148 DT denotes the
T1962 142-144 IN denotes of
T1961 137-141 CD denotes −539
T1960 133-136 CC denotes and
T1959 128-132 CD denotes −189
T1958 116-127 NN denotes nucleotides
T1957 108-115 IN denotes between
T1956 101-107 NN denotes region
T1955 97-100 DT denotes the
T1954 94-96 IN denotes in
T1953 84-93 NN denotes sequences
T1952 73-83 JJ denotes regulatory
T1951 62-72 JJ denotes cis-acting
T1950 57-61 IN denotes upon
T1949 47-56 JJ denotes dependent
T1948 44-46 VB denotes is
T1947 35-43 NN denotes SerpinB2
T1946 32-34 IN denotes of
T1945 22-31 NN denotes induction
T1944 18-21 NN denotes LPS
T1943 13-17 IN denotes that
T1942 8-12 VB denotes show
T1941 5-7 PRP denotes we
T1940 0-4 RB denotes Here
R1349 T1941 T1942 arg1Of we,show
R1350 T1942 T1940 arg1Of show,Here
R1351 T1945 T1944 arg1Of induction,LPS
R1352 T1945 T1946 arg1Of induction,of
R1353 T1945 T1948 arg1Of induction,is
R1354 T1945 T1949 arg1Of induction,dependent
R1355 T1945 T1969 arg1Of induction,is
R1356 T1945 T1971 arg1Of induction,dependent
R1357 T1947 T1946 arg2Of SerpinB2,of
R1358 T1948 T1968 arg1Of is,and
R1359 T1949 T1948 arg2Of dependent,is
R1360 T1949 T1950 arg1Of dependent,upon
R1361 T1953 T1950 arg2Of sequences,upon
R1362 T1953 T1951 arg1Of sequences,cis-acting
R1363 T1953 T1952 arg1Of sequences,regulatory
R1364 T1953 T1954 arg1Of sequences,in
R1365 T1956 T1954 arg2Of region,in
R1366 T1956 T1955 arg1Of region,the
R1367 T1956 T1957 arg1Of region,between
R1368 T1959 T1960 arg1Of −189,and
R1369 T1960 T1957 arg2Of and,between
R1370 T1960 T1958 arg1Of and,nucleotides
R1371 T1960 T1962 arg1Of and,of
R1372 T1961 T1960 arg2Of −539,and
R1373 T1966 T1962 arg2Of promoter,of
R1374 T1966 T1963 arg1Of promoter,the
R1375 T1966 T1964 arg1Of promoter,murine
R1376 T1966 T1965 arg1Of promoter,SerpinB2
R1377 T1968 T1942 arg2Of and,show
R1378 T1968 T1943 arg1Of and,that
R1379 T1968 T1967 arg1Of and,","
R1380 T1969 T1968 arg2Of is,and
R1381 T1969 T1970 arg1Of is,critically
R1382 T1971 T1969 arg2Of dependent,is
R1383 T1971 T1972 arg1Of dependent,upon
R1384 T1976 T1972 arg2Of site,upon
R1385 T1976 T1973 arg1Of site,a
R1386 T1976 T1974 arg1Of site,C/EBP
R1387 T1976 T1975 arg1Of site,binding
R1388 T1976 T1977 arg1Of site,at
R1389 T1978 T1977 arg2Of −203/−195,at

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T1296 210-228 Antecedent denotes C/EBP binding site

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1318 156-164 Protein denotes SerpinB2
T1317 35-43 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2116 156-164 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T2115 35-43 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-MF

Id Subject Object Predicate Lexical cue
T1380 216-223 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T1219 0-242 Sentence denotes Here we show that LPS induction of SerpinB2 is dependent upon cis-acting regulatory sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195.
T29 0-242 Sentence denotes Here we show that LPS induction of SerpinB2 is dependent upon cis-acting regulatory sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195.

simple1

Id Subject Object Predicate Lexical cue
T1416 156-164 Protein denotes SerpinB2
T1415 35-43 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2074 156-164 Protein denotes SerpinB2
T2073 35-43 Protein denotes SerpinB2
T2095 22-31 Positive_regulation denotes induction
T2094 47-56 Positive_regulation denotes dependent
T2093 193-202 Positive_regulation denotes dependent
R1460 T2073 T2095 themeOf SerpinB2,induction
R1470 T2095 T2094 themeOf induction,dependent
R1471 T2095 T2093 themeOf induction,dependent

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2233 156-164 Protein denotes SerpinB2
T2232 35-43 Protein denotes SerpinB2
T2253 193-202 Positive_regulation denotes dependent
T2252 22-31 Positive_regulation denotes induction
T2251 47-56 Positive_regulation denotes dependent
R1519 T2232 T2252 themeOf SerpinB2,induction
R1526 T2252 T2251 themeOf induction,dependent
R1527 T2252 T2253 themeOf induction,dependent

DLUT931

Id Subject Object Predicate Lexical cue
T2173 216-223 Binding denotes binding
T2172 47-56 Positive_regulation denotes dependent
T2171 22-31 Positive_regulation denotes induction
T2152 156-164 Protein denotes SerpinB2
T2151 35-43 Protein denotes SerpinB2
R1486 T2151 T2171 themeOf SerpinB2,induction
R1487 T2151 T2173 themeOf SerpinB2,binding
R1496 T2171 T2172 themeOf induction,dependent

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2480 203-228 Binding denotes upon a C/EBP binding site
T2476 18-72 Regulation denotes LPS induction of SerpinB2 is dependent upon cis-acting
T2475 18-72 Regulation denotes LPS induction of SerpinB2 is dependent upon cis-acting
T2471 18-43 Positive_regulation denotes LPS induction of SerpinB2
T2470 18-43 Gene_expression denotes LPS induction of SerpinB2
T2444 32-43 Protein denotes of SerpinB2
T2434 145-174 Entity denotes the murine SerpinB2 promoter,
T2399 210-215 Protein denotes C/EBP
T2390 18-21 Entity denotes LPS
T2384 57-72 Protein denotes upon cis-acting
T2376 156-164 Protein denotes SerpinB2
T2374 116-127 Entity denotes nucleotides
T2371 203-228 Entity denotes upon a C/EBP binding site
R1600 T2470 T2475 themeOf LPS induction of SerpinB2,LPS induction of SerpinB2 is dependent upon cis-acting
R1601 T2371 T2480 themeOf upon a C/EBP binding site,upon a C/EBP binding site
R1603 T2471 T2476 themeOf LPS induction of SerpinB2,LPS induction of SerpinB2 is dependent upon cis-acting
R1607 T2390 T2471 causeOf LPS,LPS induction of SerpinB2
R1632 T2434 T2376 partOf "the murine SerpinB2 promoter,",SerpinB2
R1640 T2444 T2470 themeOf of SerpinB2,LPS induction of SerpinB2
R1641 T2444 T2471 themeOf of SerpinB2,LPS induction of SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2309 193-202 Negative_regulation denotes dependent
T2308 116-127 Gene_expression denotes nucleotides
T2307 47-56 Regulation denotes dependent
T2306 22-31 Positive_regulation denotes induction
T2305 210-215 Protein denotes C/EBP
T2304 149-173 Protein denotes murine SerpinB2 promoter
T2303 35-43 Protein denotes SerpinB2
R1573 T2303 T2306 themeOf SerpinB2,induction
R1575 T2304 T2308 themeOf murine SerpinB2 promoter,nucleotides
R1576 T2306 T2307 themeOf induction,dependent
R1581 T2306 T2309 themeOf induction,dependent

testone

Id Subject Object Predicate Lexical cue
T1128 22-31 Positive_regulation denotes induction
T1113 156-164 Protein denotes SerpinB2
T1112 35-43 Protein denotes SerpinB2
R750 T1112 T1128 themeOf SerpinB2,induction

test3

Id Subject Object Predicate Lexical cue
T1186 156-164 Protein denotes SerpinB2
T1185 47-56 Regulation denotes dependent
T1184 35-43 Protein denotes SerpinB2
T1183 22-31 Positive_regulation denotes induction
T1154 156-164 Protein denotes SerpinB2
T1153 35-43 Protein denotes SerpinB2
R761 T1183 T1185 themeOf induction,dependent
R762 T1184 T1183 themeOf SerpinB2,induction