PMC:3589482 / 46550-46815 JSONTXT

Annnotations TAB JSON ListView MergeView

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T22225","span":{"begin":264,"end":265},"obj":"."},{"id":"T22224","span":{"begin":248,"end":264},"obj":"NN"},{"id":"T22223","span":{"begin":242,"end":247},"obj":"NN"},{"id":"T22222","span":{"begin":238,"end":241},"obj":"DT"},{"id":"T22221","span":{"begin":235,"end":237},"obj":"IN"},{"id":"T22220","span":{"begin":229,"end":234},"obj":"NNS"},{"id":"T22219","span":{"begin":222,"end":228},"obj":"JJ"},{"id":"T22218","span":{"begin":209,"end":221},"obj":"VBG"},{"id":"T22217","span":{"begin":206,"end":208},"obj":"IN"},{"id":"T22216","span":{"begin":196,"end":205},"obj":"NN"},{"id":"T22215","span":{"begin":183,"end":195},"obj":"JJ"},{"id":"T22214","span":{"begin":179,"end":182},"obj":"DT"},{"id":"T22213","span":{"begin":175,"end":178},"obj":"IN"},{"id":"T22212","span":{"begin":162,"end":174},"obj":"NNS"},{"id":"T22211","span":{"begin":157,"end":161},"obj":"VB"},{"id":"T22210","span":{"begin":153,"end":156},"obj":"MD"},{"id":"T22209","span":{"begin":147,"end":152},"obj":"WDT"},{"id":"T22208","span":{"begin":145,"end":146},"obj":","},{"id":"T22207","span":{"begin":141,"end":145},"obj":"NN"},{"id":"T22206","span":{"begin":132,"end":140},"obj":"NNP"},{"id":"T22205","span":{"begin":128,"end":131},"obj":"DT"},{"id":"T22204","span":{"begin":125,"end":127},"obj":"IN"},{"id":"T22203","span":{"begin":111,"end":124},"obj":"NN"},{"id":"T22202","span":{"begin":99,"end":110},"obj":"JJ"},{"id":"T22201","span":{"begin":95,"end":98},"obj":"CC"},{"id":"T22200","span":{"begin":82,"end":94},"obj":"JJ"},{"id":"T22199","span":{"begin":77,"end":81},"obj":"DT"},{"id":"T22198","span":{"begin":67,"end":76},"obj":"VBG"},{"id":"T22197","span":{"begin":64,"end":66},"obj":"IN"},{"id":"T22196","span":{"begin":59,"end":63},"obj":"NN"},{"id":"T22195","span":{"begin":49,"end":58},"obj":"JJ"},{"id":"T22194","span":{"begin":46,"end":48},"obj":"DT"},{"id":"T22193","span":{"begin":40,"end":45},"obj":"VBZ"},{"id":"T22192","span":{"begin":38,"end":39},"obj":"NN"},{"id":"T22191","span":{"begin":37,"end":38},"obj":":"},{"id":"T22190","span":{"begin":32,"end":37},"obj":"NNP"},{"id":"T22189","span":{"begin":27,"end":31},"obj":"IN"},{"id":"T22188","span":{"begin":14,"end":26},"obj":"VBN"},{"id":"T22187","span":{"begin":10,"end":13},"obj":"VBZ"},{"id":"T22186","span":{"begin":4,"end":9},"obj":"NN"},{"id":"T22185","span":{"begin":0,"end":3},"obj":"PRP$"}],"relations":[{"id":"R16019","pred":"poss","subj":"T22185","obj":"T22186"},{"id":"R16021","pred":"nsubj","subj":"T22186","obj":"T22188"},{"id":"R16022","pred":"aux","subj":"T22187","obj":"T22188"},{"id":"R16023","pred":"ROOT","subj":"T22188","obj":"T22188"},{"id":"R16025","pred":"mark","subj":"T22189","obj":"T22193"},{"id":"R16026","pred":"compound","subj":"T22190","obj":"T22192"},{"id":"R16028","pred":"punct","subj":"T22191","obj":"T22192"},{"id":"R16029","pred":"nsubj","subj":"T22192","obj":"T22193"},{"id":"R16030","pred":"ccomp","subj":"T22193","obj":"T22188"},{"id":"R16032","pred":"det","subj":"T22194","obj":"T22196"},{"id":"R16033","pred":"amod","subj":"T22195","obj":"T22196"},{"id":"R16034","pred":"dobj","subj":"T22196","obj":"T22193"},{"id":"R16036","pred":"prep","subj":"T22197","obj":"T22196"},{"id":"R16037","pred":"pcomp","subj":"T22198","obj":"T22197"},{"id":"R16039","pred":"preconj","subj":"T22199","obj":"T22200"},{"id":"R16040","pred":"nmod","subj":"T22200","obj":"T22203"},{"id":"R16041","pred":"cc","subj":"T22201","obj":"T22200"},{"id":"R16043","pred":"conj","subj":"T22202","obj":"T22200"},{"id":"R16044","pred":"dobj","subj":"T22203","obj":"T22198"},{"id":"R16045","pred":"prep","subj":"T22204","obj":"T22203"},{"id":"R16046","pred":"det","subj":"T22205","obj":"T22207"},{"id":"R16047","pred":"compound","subj":"T22206","obj":"T22207"},{"id":"R16049","pred":"pobj","subj":"T22207","obj":"T22204"},{"id":"R16050","pred":"punct","subj":"T22208","obj":"T22207"},{"id":"R16051","pred":"nsubj","subj":"T22209","obj":"T22211"},{"id":"R16052","pred":"aux","subj":"T22210","obj":"T22211"},{"id":"R16054","pred":"relcl","subj":"T22211","obj":"T22207"},{"id":"R16055","pred":"dobj","subj":"T22212","obj":"T22211"},{"id":"R16057","pred":"prep","subj":"T22213","obj":"T22212"},{"id":"R16058","pred":"det","subj":"T22214","obj":"T22216"},{"id":"R16059","pred":"amod","subj":"T22215","obj":"T22216"},{"id":"R16061","pred":"pobj","subj":"T22216","obj":"T22213"},{"id":"R16062","pred":"prep","subj":"T22217","obj":"T22216"},{"id":"R16063","pred":"pcomp","subj":"T22218","obj":"T22217"},{"id":"R16065","pred":"amod","subj":"T22219","obj":"T22220"},{"id":"R16067","pred":"dobj","subj":"T22220","obj":"T22218"},{"id":"R16069","pred":"prep","subj":"T22221","obj":"T22218"},{"id":"R16071","pred":"det","subj":"T22222","obj":"T22224"},{"id":"R16072","pred":"compound","subj":"T22223","obj":"T22224"},{"id":"R16074","pred":"pobj","subj":"T22224","obj":"T22221"},{"id":"R16075","pred":"punct","subj":"T22225","obj":"T22188"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T19926","span":{"begin":248,"end":264},"obj":"NN"},{"id":"T19925","span":{"begin":242,"end":247},"obj":"NN"},{"id":"T19924","span":{"begin":238,"end":241},"obj":"DT"},{"id":"T19923","span":{"begin":235,"end":237},"obj":"IN"},{"id":"T19922","span":{"begin":229,"end":234},"obj":"NN"},{"id":"T19921","span":{"begin":222,"end":228},"obj":"JJ"},{"id":"T19920","span":{"begin":209,"end":221},"obj":"VB"},{"id":"T19919","span":{"begin":206,"end":208},"obj":"IN"},{"id":"T19918","span":{"begin":196,"end":205},"obj":"NN"},{"id":"T19917","span":{"begin":183,"end":195},"obj":"JJ"},{"id":"T19916","span":{"begin":179,"end":182},"obj":"DT"},{"id":"T19915","span":{"begin":175,"end":178},"obj":"IN"},{"id":"T19914","span":{"begin":162,"end":174},"obj":"NN"},{"id":"T19913","span":{"begin":157,"end":161},"obj":"VB"},{"id":"T19912","span":{"begin":153,"end":156},"obj":"MD"},{"id":"T19911","span":{"begin":147,"end":152},"obj":"WDT"},{"id":"T19910","span":{"begin":145,"end":146},"obj":"-COMMA-"},{"id":"T19909","span":{"begin":141,"end":145},"obj":"NN"},{"id":"T19908","span":{"begin":132,"end":140},"obj":"NN"},{"id":"T19907","span":{"begin":128,"end":131},"obj":"DT"},{"id":"T19906","span":{"begin":125,"end":127},"obj":"IN"},{"id":"T19905","span":{"begin":111,"end":124},"obj":"NN"},{"id":"T19904","span":{"begin":99,"end":110},"obj":"JJ"},{"id":"T19903","span":{"begin":95,"end":98},"obj":"CC"},{"id":"T19902","span":{"begin":82,"end":94},"obj":"JJ"},{"id":"T19901","span":{"begin":77,"end":81},"obj":"CC"},{"id":"T19900","span":{"begin":67,"end":76},"obj":"VB"},{"id":"T19899","span":{"begin":64,"end":66},"obj":"IN"},{"id":"T19898","span":{"begin":59,"end":63},"obj":"NN"},{"id":"T19897","span":{"begin":49,"end":58},"obj":"JJ"},{"id":"T19896","span":{"begin":46,"end":48},"obj":"DT"},{"id":"T19895","span":{"begin":40,"end":45},"obj":"VB"},{"id":"T19894","span":{"begin":32,"end":39},"obj":"NN"},{"id":"T19893","span":{"begin":27,"end":31},"obj":"IN"},{"id":"T19892","span":{"begin":14,"end":26},"obj":"VB"},{"id":"T19891","span":{"begin":10,"end":13},"obj":"VB"},{"id":"T19890","span":{"begin":4,"end":9},"obj":"NN"},{"id":"T19889","span":{"begin":0,"end":3},"obj":"PRP-DOLLAR-"}],"relations":[{"id":"R14397","pred":"arg1Of","subj":"T19890","obj":"T19889"},{"id":"R14398","pred":"arg1Of","subj":"T19890","obj":"T19891"},{"id":"R14399","pred":"arg1Of","subj":"T19890","obj":"T19892"},{"id":"R14400","pred":"arg2Of","subj":"T19892","obj":"T19891"},{"id":"R14401","pred":"arg1Of","subj":"T19894","obj":"T19895"},{"id":"R14402","pred":"arg2Of","subj":"T19895","obj":"T19892"},{"id":"R14403","pred":"arg1Of","subj":"T19895","obj":"T19893"},{"id":"R14404","pred":"arg2Of","subj":"T19898","obj":"T19895"},{"id":"R14405","pred":"arg1Of","subj":"T19898","obj":"T19896"},{"id":"R14406","pred":"arg1Of","subj":"T19898","obj":"T19897"},{"id":"R14407","pred":"arg1Of","subj":"T19898","obj":"T19899"},{"id":"R14408","pred":"arg1Of","subj":"T19898","obj":"T19910"},{"id":"R14409","pred":"arg1Of","subj":"T19898","obj":"T19911"},{"id":"R14410","pred":"arg1Of","subj":"T19898","obj":"T19912"},{"id":"R14411","pred":"arg1Of","subj":"T19898","obj":"T19913"},{"id":"R14412","pred":"arg2Of","subj":"T19900","obj":"T19899"},{"id":"R14413","pred":"arg1Of","subj":"T19902","obj":"T19903"},{"id":"R14414","pred":"arg1Of","subj":"T19903","obj":"T19901"},{"id":"R14415","pred":"arg2Of","subj":"T19904","obj":"T19903"},{"id":"R14416","pred":"arg2Of","subj":"T19905","obj":"T19900"},{"id":"R14417","pred":"arg1Of","subj":"T19905","obj":"T19902"},{"id":"R14418","pred":"arg1Of","subj":"T19905","obj":"T19904"},{"id":"R14419","pred":"arg1Of","subj":"T19905","obj":"T19906"},{"id":"R14420","pred":"arg2Of","subj":"T19909","obj":"T19906"},{"id":"R14421","pred":"arg1Of","subj":"T19909","obj":"T19907"},{"id":"R14422","pred":"arg1Of","subj":"T19909","obj":"T19908"},{"id":"R14423","pred":"arg2Of","subj":"T19913","obj":"T19912"},{"id":"R14424","pred":"arg2Of","subj":"T19914","obj":"T19913"},{"id":"R14425","pred":"arg1Of","subj":"T19914","obj":"T19915"},{"id":"R14426","pred":"arg2Of","subj":"T19918","obj":"T19915"},{"id":"R14427","pred":"arg1Of","subj":"T19918","obj":"T19916"},{"id":"R14428","pred":"arg1Of","subj":"T19918","obj":"T19917"},{"id":"R14429","pred":"arg1Of","subj":"T19918","obj":"T19919"},{"id":"R14430","pred":"arg2Of","subj":"T19920","obj":"T19919"},{"id":"R14431","pred":"arg1Of","subj":"T19920","obj":"T19923"},{"id":"R14432","pred":"arg2Of","subj":"T19922","obj":"T19920"},{"id":"R14433","pred":"arg1Of","subj":"T19922","obj":"T19921"},{"id":"R14434","pred":"arg2Of","subj":"T19926","obj":"T19923"},{"id":"R14435","pred":"arg1Of","subj":"T19926","obj":"T19924"},{"id":"R14436","pred":"arg1Of","subj":"T19926","obj":"T19925"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T18783","span":{"begin":132,"end":140},"obj":"Protein"},{"id":"T18782","span":{"begin":32,"end":39},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T20238","span":{"begin":132,"end":140},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T18843","span":{"begin":222,"end":247},"obj":"http://purl.obolibrary.org/obo/GO_0002418"},{"id":"T18806","span":{"begin":111,"end":124},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T18853","span":{"begin":229,"end":234},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    sentences

    {"project":"sentences","denotations":[{"id":"T18512","span":{"begin":0,"end":265},"obj":"Sentence"},{"id":"T277","span":{"begin":0,"end":265},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    simple1

    {"project":"simple1","denotations":[{"id":"T18920","span":{"begin":132,"end":140},"obj":"Protein"},{"id":"T18919","span":{"begin":32,"end":39},"obj":"Protein"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T20199","span":{"begin":99,"end":110},"obj":"Positive_regulation"},{"id":"T20198","span":{"begin":111,"end":124},"obj":"Transcription"},{"id":"T20128","span":{"begin":132,"end":140},"obj":"Protein"},{"id":"T20127","span":{"begin":32,"end":39},"obj":"Protein"}],"relations":[{"id":"R14568","pred":"themeOf","subj":"T20128","obj":"T20198"},{"id":"R14610","pred":"themeOf","subj":"T20198","obj":"T20199"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T20638","span":{"begin":111,"end":124},"obj":"Transcription"},{"id":"T20637","span":{"begin":99,"end":110},"obj":"Positive_regulation"},{"id":"T20578","span":{"begin":132,"end":140},"obj":"Protein"},{"id":"T20577","span":{"begin":32,"end":39},"obj":"Protein"}],"relations":[{"id":"R14777","pred":"themeOf","subj":"T20578","obj":"T20638"},{"id":"R14800","pred":"themeOf","subj":"T20638","obj":"T20637"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T20418","span":{"begin":99,"end":110},"obj":"Positive_regulation"},{"id":"T20417","span":{"begin":111,"end":124},"obj":"Transcription"},{"id":"T20352","span":{"begin":132,"end":140},"obj":"Protein"},{"id":"T20351","span":{"begin":32,"end":39},"obj":"Protein"}],"relations":[{"id":"R14663","pred":"themeOf","subj":"T20352","obj":"T20417"},{"id":"R14698","pred":"themeOf","subj":"T20417","obj":"T20418"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T21111","span":{"begin":82,"end":145},"obj":"Transcription"},{"id":"T21087","span":{"begin":67,"end":145},"obj":"Regulation"},{"id":"T21018","span":{"begin":132,"end":140},"obj":"Protein"},{"id":"T20929","span":{"begin":32,"end":39},"obj":"Protein"},{"id":"T20916","span":{"begin":99,"end":110},"obj":"Entity"},{"id":"T20954","span":{"begin":125,"end":145},"obj":"Protein"}],"relations":[{"id":"R14945","pred":"themeOf","subj":"T20954","obj":"T21111"},{"id":"R14979","pred":"themeOf","subj":"T21111","obj":"T21087"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T20765","span":{"begin":67,"end":76},"obj":"Positive_regulation"},{"id":"T20764","span":{"begin":111,"end":124},"obj":"Transcription"},{"id":"T20763","span":{"begin":132,"end":145},"obj":"Protein"},{"id":"T20762","span":{"begin":32,"end":39},"obj":"Protein"}],"relations":[{"id":"R14863","pred":"causeOf","subj":"T20762","obj":"T20765"},{"id":"R14864","pred":"themeOf","subj":"T20763","obj":"T20764"},{"id":"R14865","pred":"themeOf","subj":"T20764","obj":"T20765"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    testone

    {"project":"testone","denotations":[{"id":"T18278","span":{"begin":111,"end":124},"obj":"Transcription"},{"id":"T18277","span":{"begin":103,"end":110},"obj":"Positive_regulation"},{"id":"T18231","span":{"begin":132,"end":140},"obj":"Protein"},{"id":"T18230","span":{"begin":32,"end":39},"obj":"Protein"}],"relations":[{"id":"R13142","pred":"themeOf","subj":"T18231","obj":"T18278"},{"id":"R13156","pred":"themeOf","subj":"T18278","obj":"T18277"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}

    test3

    {"project":"test3","denotations":[{"id":"T18472","span":{"begin":132,"end":140},"obj":"Protein"},{"id":"T18471","span":{"begin":111,"end":124},"obj":"Transcription"},{"id":"T18470","span":{"begin":103,"end":110},"obj":"Positive_regulation"},{"id":"T18469","span":{"begin":32,"end":39},"obj":"Protein"},{"id":"T18348","span":{"begin":132,"end":140},"obj":"Protein"},{"id":"T18347","span":{"begin":32,"end":39},"obj":"Protein"}],"relations":[{"id":"R13219","pred":"themeOf","subj":"T18471","obj":"T18470"},{"id":"R13220","pred":"themeOf","subj":"T18472","obj":"T18471"}],"text":"Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment."}