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PMC:3589482 / 464-616 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T855 144-152 CD denotes SerpinB2
T854 130-143 JJ denotes LPS-regulated
T853 126-129 DT denotes the
T852 122-125 VB denotes map
T851 119-121 TO denotes To
T850 117-118 . denotes .
T849 106-117 NNS denotes macrophages
T848 99-105 JJ denotes murine
T847 96-98 IN denotes in
T846 92-95 NNS denotes hrs
T845 89-91 CD denotes 24
T844 86-88 IN denotes of
T843 79-85 NN denotes period
T842 77-78 DT denotes a
T841 72-76 IN denotes over
T840 62-71 JJ denotes 1000-fold
T839 61-62 CD denotes
T838 58-60 IN denotes by
T837 56-57 -RRB- denotes )
T836 52-56 CD denotes TLR4
T835 51-52 -LRB- denotes (
T834 49-50 CD denotes 4
T833 40-48 NN denotes receptor
T832 30-39 JJ denotes toll-like
T831 26-29 DT denotes the
T830 22-25 IN denotes via
T829 11-21 NN denotes expression
T828 2-10 NNP denotes SerpinB2
R415 T828 T829 compound SerpinB2,expression
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R426 T839 T838 pobj ∼,by
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R438 T851 T852 aux To,map

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 89-91 CD denotes 24
T306 86-88 IN denotes of
T305 79-85 NN denotes period
T304 77-78 DT denotes a
T303 72-76 IN denotes over
T302 61-71 RB denotes ∼1000-fold
T301 58-60 IN denotes by
T300 56-57 -RRB- denotes )
T299 52-56 NN denotes TLR4
T298 51-52 -LRB- denotes (
T297 49-50 CD denotes 4
T296 40-48 NN denotes receptor
T295 30-39 JJ denotes toll-like
T294 26-29 DT denotes the
T293 22-25 IN denotes via
T292 11-21 NN denotes expression
T291 2-10 NN denotes SerpinB2
T316 144-152 NN denotes SerpinB2
T315 130-143 JJ denotes LPS-regulated
T314 126-129 DT denotes the
T313 122-125 VB denotes map
T312 119-121 TO denotes To
T311 106-117 NN denotes macrophages
T310 99-105 JJ denotes murine
T309 96-98 IN denotes in
T308 92-95 NN denotes hrs
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T162 2-10 Protein denotes SerpinB2
T163 30-50 Protein denotes toll-like receptor 4
T164 52-56 Protein denotes TLR4
T165 144-152 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 52-56 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 2-10 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T532 144-152 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

simple1

Id Subject Object Predicate Lexical cue
T215 2-10 Protein denotes SerpinB2
T216 30-50 Protein denotes toll-like receptor 4
T217 52-56 Protein denotes TLR4
T218 144-152 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T513 11-21 Gene_expression denotes expression
T500 144-152 Protein denotes SerpinB2
T498 52-56 Protein denotes TLR4
T496 2-10 Protein denotes SerpinB2
T497 30-50 Protein denotes toll-like receptor 4
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T606 2-10 Protein denotes SerpinB2
T607 30-50 Protein denotes toll-like receptor 4
T608 52-56 Protein denotes TLR4
T610 144-152 Protein denotes SerpinB2
T623 11-21 Gene_expression denotes expression
R718 T606 T623 themeOf SerpinB2,expression

DLUT931

Id Subject Object Predicate Lexical cue
T572 2-10 Protein denotes SerpinB2
T573 30-50 Protein denotes toll-like receptor 4
T574 52-56 Protein denotes TLR4
T576 144-152 Protein denotes SerpinB2
T590 11-21 Gene_expression denotes expression
R685 T572 T590 themeOf SerpinB2,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 89-117 Localization denotes 24 hrs in murine macrophages
T759 2-21 Gene_expression denotes SerpinB2 expression
T748 2-10 Protein denotes SerpinB2
T714 26-57 Protein denotes the toll-like receptor 4 (TLR4)
T715 52-56 Protein denotes TLR4
T719 89-117 Protein denotes 24 hrs in murine macrophages
T720 144-152 Protein denotes SerpinB2
T724 99-117 Entity denotes murine macrophages
T741 130-143 Entity denotes LPS-regulated
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T646 11-21 Gene_expression denotes expression
T645 2-10 Protein denotes SerpinB2
R324 T645 T646 themeOf SerpinB2,expression

testone

Id Subject Object Predicate Lexical cue
T40 11-21 Gene_expression denotes expression
T28 144-152 Protein denotes SerpinB2
T27 52-56 Protein denotes TLR4
T26 30-50 Protein denotes toll-like receptor 4
T25 2-10 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T79 144-152 Protein denotes SerpinB2
T78 52-56 Protein denotes TLR4
T77 30-50 Protein denotes toll-like receptor 4
T76 11-21 Gene_expression denotes expression
T75 2-10 Protein denotes SerpinB2
T57 144-152 Protein denotes SerpinB2
T56 52-56 Protein denotes TLR4
T55 30-50 Protein denotes toll-like receptor 4
T54 2-10 Protein denotes SerpinB2
R17 T75 T76 themeOf SerpinB2,expression
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4