PMC:3589482 / 464-616
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T855 | 144-152 | CD | denotes | SerpinB2 |
| T854 | 130-143 | JJ | denotes | LPS-regulated |
| T853 | 126-129 | DT | denotes | the |
| T852 | 122-125 | VB | denotes | map |
| T851 | 119-121 | TO | denotes | To |
| T850 | 117-118 | . | denotes | . |
| T849 | 106-117 | NNS | denotes | macrophages |
| T848 | 99-105 | JJ | denotes | murine |
| T847 | 96-98 | IN | denotes | in |
| T846 | 92-95 | NNS | denotes | hrs |
| T845 | 89-91 | CD | denotes | 24 |
| T844 | 86-88 | IN | denotes | of |
| T843 | 79-85 | NN | denotes | period |
| T842 | 77-78 | DT | denotes | a |
| T841 | 72-76 | IN | denotes | over |
| T840 | 62-71 | JJ | denotes | 1000-fold |
| T839 | 61-62 | CD | denotes | ∼ |
| T838 | 58-60 | IN | denotes | by |
| T837 | 56-57 | -RRB- | denotes | ) |
| T836 | 52-56 | CD | denotes | TLR4 |
| T835 | 51-52 | -LRB- | denotes | ( |
| T834 | 49-50 | CD | denotes | 4 |
| T833 | 40-48 | NN | denotes | receptor |
| T832 | 30-39 | JJ | denotes | toll-like |
| T831 | 26-29 | DT | denotes | the |
| T830 | 22-25 | IN | denotes | via |
| T829 | 11-21 | NN | denotes | expression |
| T828 | 2-10 | NNP | denotes | SerpinB2 |
| R415 | T828 | T829 | compound | SerpinB2,expression |
| R418 | T831 | T833 | det | the,receptor |
| R419 | T832 | T833 | amod | toll-like,receptor |
| R420 | T833 | T830 | pobj | receptor,via |
| R421 | T834 | T833 | nummod | 4,receptor |
| R422 | T835 | T833 | punct | (,receptor |
| R423 | T836 | T833 | appos | TLR4,receptor |
| R424 | T837 | T833 | punct | ),receptor |
| R426 | T839 | T838 | pobj | ∼,by |
| R428 | T841 | T840 | prep | over,1000-fold |
| R429 | T842 | T843 | det | a,period |
| R430 | T843 | T841 | pobj | period,over |
| R431 | T844 | T843 | prep | of,period |
| R432 | T845 | T846 | nummod | 24,hrs |
| R433 | T846 | T844 | pobj | hrs,of |
| R434 | T847 | T846 | prep | in,hrs |
| R435 | T848 | T849 | amod | murine,macrophages |
| R436 | T849 | T847 | pobj | macrophages,in |
| R438 | T851 | T852 | aux | To,map |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T307 | 89-91 | CD | denotes | 24 |
| T306 | 86-88 | IN | denotes | of |
| T305 | 79-85 | NN | denotes | period |
| T304 | 77-78 | DT | denotes | a |
| T303 | 72-76 | IN | denotes | over |
| T302 | 61-71 | RB | denotes | ∼1000-fold |
| T301 | 58-60 | IN | denotes | by |
| T300 | 56-57 | -RRB- | denotes | ) |
| T299 | 52-56 | NN | denotes | TLR4 |
| T298 | 51-52 | -LRB- | denotes | ( |
| T297 | 49-50 | CD | denotes | 4 |
| T296 | 40-48 | NN | denotes | receptor |
| T295 | 30-39 | JJ | denotes | toll-like |
| T294 | 26-29 | DT | denotes | the |
| T293 | 22-25 | IN | denotes | via |
| T292 | 11-21 | NN | denotes | expression |
| T291 | 2-10 | NN | denotes | SerpinB2 |
| T316 | 144-152 | NN | denotes | SerpinB2 |
| T315 | 130-143 | JJ | denotes | LPS-regulated |
| T314 | 126-129 | DT | denotes | the |
| T313 | 122-125 | VB | denotes | map |
| T312 | 119-121 | TO | denotes | To |
| T311 | 106-117 | NN | denotes | macrophages |
| T310 | 99-105 | JJ | denotes | murine |
| T309 | 96-98 | IN | denotes | in |
| T308 | 92-95 | NN | denotes | hrs |
| R106 | T292 | T291 | arg1Of | expression,SerpinB2 |
| R107 | T296 | T293 | arg2Of | receptor,via |
| R108 | T296 | T294 | arg1Of | receptor,the |
| R109 | T296 | T295 | arg1Of | receptor,toll-like |
| R110 | T296 | T297 | arg1Of | receptor,4 |
| R111 | T296 | T298 | arg1Of | receptor,( |
| R112 | T299 | T298 | arg2Of | TLR4,( |
| R113 | T300 | T298 | arg3Of | ),( |
| R114 | T302 | T301 | arg2Of | ∼1000-fold,by |
| R115 | T305 | T303 | arg2Of | period,over |
| R116 | T305 | T304 | arg1Of | period,a |
| R117 | T305 | T306 | arg1Of | period,of |
| R118 | T305 | T309 | arg1Of | period,in |
| R119 | T308 | T306 | arg2Of | hrs,of |
| R120 | T308 | T307 | arg1Of | hrs,24 |
| R121 | T311 | T309 | arg2Of | macrophages,in |
| R122 | T311 | T310 | arg1Of | macrophages,murine |
| R123 | T313 | T312 | arg1Of | map,To |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T162 | 2-10 | Protein | denotes | SerpinB2 |
| T163 | 30-50 | Protein | denotes | toll-like receptor 4 |
| T164 | 52-56 | Protein | denotes | TLR4 |
| T165 | 144-152 | Protein | denotes | SerpinB2 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T539 | 52-56 | http://www.uniprot.org/uniprot/O00206 | denotes | TLR4 |
| T531 | 2-10 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T532 | 144-152 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T215 | 2-10 | Protein | denotes | SerpinB2 |
| T216 | 30-50 | Protein | denotes | toll-like receptor 4 |
| T217 | 52-56 | Protein | denotes | TLR4 |
| T218 | 144-152 | Protein | denotes | SerpinB2 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T513 | 11-21 | Gene_expression | denotes | expression |
| T500 | 144-152 | Protein | denotes | SerpinB2 |
| T498 | 52-56 | Protein | denotes | TLR4 |
| T496 | 2-10 | Protein | denotes | SerpinB2 |
| T497 | 30-50 | Protein | denotes | toll-like receptor 4 |
| R680 | T496 | T513 | themeOf | SerpinB2,expression |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T606 | 2-10 | Protein | denotes | SerpinB2 |
| T607 | 30-50 | Protein | denotes | toll-like receptor 4 |
| T608 | 52-56 | Protein | denotes | TLR4 |
| T610 | 144-152 | Protein | denotes | SerpinB2 |
| T623 | 11-21 | Gene_expression | denotes | expression |
| R718 | T606 | T623 | themeOf | SerpinB2,expression |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T572 | 2-10 | Protein | denotes | SerpinB2 |
| T573 | 30-50 | Protein | denotes | toll-like receptor 4 |
| T574 | 52-56 | Protein | denotes | TLR4 |
| T576 | 144-152 | Protein | denotes | SerpinB2 |
| T590 | 11-21 | Gene_expression | denotes | expression |
| R685 | T572 | T590 | themeOf | SerpinB2,expression |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T760 | 89-117 | Localization | denotes | 24 hrs in murine macrophages |
| T759 | 2-21 | Gene_expression | denotes | SerpinB2 expression |
| T748 | 2-10 | Protein | denotes | SerpinB2 |
| T714 | 26-57 | Protein | denotes | the toll-like receptor 4 (TLR4) |
| T715 | 52-56 | Protein | denotes | TLR4 |
| T719 | 89-117 | Protein | denotes | 24 hrs in murine macrophages |
| T720 | 144-152 | Protein | denotes | SerpinB2 |
| T724 | 99-117 | Entity | denotes | murine macrophages |
| T741 | 130-143 | Entity | denotes | LPS-regulated |
| R348 | T748 | T759 | themeOf | SerpinB2,SerpinB2 expression |
| R721 | T719 | T760 | themeOf | 24 hrs in murine macrophages,24 hrs in murine macrophages |
| R723 | T724 | T760 | locationOf | murine macrophages,24 hrs in murine macrophages |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T646 | 11-21 | Gene_expression | denotes | expression |
| T645 | 2-10 | Protein | denotes | SerpinB2 |
| R324 | T645 | T646 | themeOf | SerpinB2,expression |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T40 | 11-21 | Gene_expression | denotes | expression |
| T28 | 144-152 | Protein | denotes | SerpinB2 |
| T27 | 52-56 | Protein | denotes | TLR4 |
| T26 | 30-50 | Protein | denotes | toll-like receptor 4 |
| T25 | 2-10 | Protein | denotes | SerpinB2 |
| R3 | T27 | T26 | equivalentTo | TLR4,toll-like receptor 4 |
| R2 | T25 | T40 | themeOf | SerpinB2,expression |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T79 | 144-152 | Protein | denotes | SerpinB2 |
| T78 | 52-56 | Protein | denotes | TLR4 |
| T77 | 30-50 | Protein | denotes | toll-like receptor 4 |
| T76 | 11-21 | Gene_expression | denotes | expression |
| T75 | 2-10 | Protein | denotes | SerpinB2 |
| T57 | 144-152 | Protein | denotes | SerpinB2 |
| T56 | 52-56 | Protein | denotes | TLR4 |
| T55 | 30-50 | Protein | denotes | toll-like receptor 4 |
| T54 | 2-10 | Protein | denotes | SerpinB2 |
| R17 | T75 | T76 | themeOf | SerpinB2,expression |
| R19 | T78 | T77 | equivalentTo | TLR4,toll-like receptor 4 |