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PMC:3589482 / 463-703 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 154-162 NN denotes promoter
T855 145-153 CD denotes SerpinB2
T854 131-144 JJ denotes LPS-regulated
T853 127-130 DT denotes the
T852 123-126 VB denotes map
T851 120-122 TO denotes To
T850 118-119 . denotes .
T849 107-118 NNS denotes macrophages
T848 100-106 JJ denotes murine
T847 97-99 IN denotes in
T846 93-96 NNS denotes hrs
T845 90-92 CD denotes 24
T844 87-89 IN denotes of
T843 80-86 NN denotes period
T842 78-79 DT denotes a
T841 73-77 IN denotes over
T840 63-72 JJ denotes 1000-fold
T839 62-63 CD denotes ∼
T838 59-61 IN denotes by
T837 57-58 -RRB- denotes )
T836 53-57 CD denotes TLR4
T835 52-53 -LRB- denotes (
T834 50-51 CD denotes 4
T833 41-49 NN denotes receptor
T832 31-40 JJ denotes toll-like
T831 27-30 DT denotes the
T830 23-26 IN denotes via
T829 12-22 NN denotes expression
T828 3-11 NNP denotes SerpinB2
T872 230-238 VBG denotes flanking
T871 229-230 : denotes -
T870 228-229 '' denotes '
T869 227-228 CD denotes 5
T868 224-226 NN denotes kb
T867 222-223 CD denotes 5
T866 221-222 NN denotes ∼
T865 217-220 DT denotes the
T864 214-216 IN denotes by
T863 207-213 VBN denotes driven
T862 196-206 NNS denotes constructs
T861 187-195 NN denotes reporter
T860 175-186 VBD denotes transfected
T859 172-174 PRP denotes we
T858 170-171 , denotes ,
T857 163-170 NNS denotes regions
R415 T828 T829 compound SerpinB2,expression
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R426 T839 T838 pobj ∼,by
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected
R448 T861 T862 compound reporter,constructs
R449 T862 T860 dobj constructs,transfected
R450 T863 T862 acl driven,constructs
R451 T864 T863 agent by,driven
R453 T866 T868 nmod ∼,kb
R454 T867 T866 nummod 5,∼
R455 T868 T872 meta kb,flanking
R456 T869 T868 nummod 5,kb
R457 T870 T869 punct ',5
R458 T871 T872 punct -,flanking

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 90-92 CD denotes 24
T306 87-89 IN denotes of
T305 80-86 NN denotes period
T304 78-79 DT denotes a
T303 73-77 IN denotes over
T302 62-72 RB denotes ∼1000-fold
T301 59-61 IN denotes by
T300 57-58 -RRB- denotes )
T299 53-57 NN denotes TLR4
T298 52-53 -LRB- denotes (
T297 50-51 CD denotes 4
T296 41-49 NN denotes receptor
T295 31-40 JJ denotes toll-like
T294 27-30 DT denotes the
T293 23-26 IN denotes via
T292 12-22 NN denotes expression
T291 3-11 NN denotes SerpinB2
T329 227-238 JJ denotes 5'-flanking
T328 224-226 NN denotes kb
T327 221-223 CD denotes ∼5
T326 217-220 DT denotes the
T325 214-216 IN denotes by
T324 207-213 VB denotes driven
T323 196-206 NN denotes constructs
T322 187-195 NN denotes reporter
T321 175-186 VB denotes transfected
T320 172-174 PRP denotes we
T319 170-171 -COMMA- denotes ,
T318 163-170 NN denotes regions
T317 154-162 NN denotes promoter
T316 145-153 NN denotes SerpinB2
T315 131-144 JJ denotes LPS-regulated
T314 127-130 DT denotes the
T313 123-126 VB denotes map
T312 120-122 TO denotes To
T311 107-118 NN denotes macrophages
T310 100-106 JJ denotes murine
T309 97-99 IN denotes in
T308 93-96 NN denotes hrs
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","
R133 T323 T321 arg2Of constructs,transfected
R134 T323 T322 arg1Of constructs,reporter
R135 T323 T324 arg2Of constructs,driven

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T162 3-11 Protein denotes SerpinB2
T163 31-51 Protein denotes toll-like receptor 4
T164 53-57 Protein denotes TLR4
T165 145-153 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 53-57 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 3-11 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T532 145-153 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

simple1

Id Subject Object Predicate Lexical cue
T215 3-11 Protein denotes SerpinB2
T216 31-51 Protein denotes toll-like receptor 4
T217 53-57 Protein denotes TLR4
T218 145-153 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T513 12-22 Gene_expression denotes expression
T500 145-153 Protein denotes SerpinB2
T498 53-57 Protein denotes TLR4
T496 3-11 Protein denotes SerpinB2
T497 31-51 Protein denotes toll-like receptor 4
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T606 3-11 Protein denotes SerpinB2
T607 31-51 Protein denotes toll-like receptor 4
T608 53-57 Protein denotes TLR4
T610 145-153 Protein denotes SerpinB2
T623 12-22 Gene_expression denotes expression
R718 T606 T623 themeOf SerpinB2,expression

DLUT931

Id Subject Object Predicate Lexical cue
T572 3-11 Protein denotes SerpinB2
T573 31-51 Protein denotes toll-like receptor 4
T574 53-57 Protein denotes TLR4
T576 145-153 Protein denotes SerpinB2
T590 12-22 Gene_expression denotes expression
R685 T572 T590 themeOf SerpinB2,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 90-118 Localization denotes 24 hrs in murine macrophages
T759 3-22 Gene_expression denotes SerpinB2 expression
T748 3-11 Protein denotes SerpinB2
T714 27-58 Protein denotes the toll-like receptor 4 (TLR4)
T715 53-57 Protein denotes TLR4
T719 90-118 Protein denotes 24 hrs in murine macrophages
T720 145-153 Protein denotes SerpinB2
T724 100-118 Entity denotes murine macrophages
T729 127-171 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T741 131-144 Entity denotes LPS-regulated
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T648 145-162 Protein denotes SerpinB2 promoter
T646 12-22 Gene_expression denotes expression
T645 3-11 Protein denotes SerpinB2
R324 T645 T646 themeOf SerpinB2,expression

testone

Id Subject Object Predicate Lexical cue
T40 12-22 Gene_expression denotes expression
T28 145-153 Protein denotes SerpinB2
T27 53-57 Protein denotes TLR4
T26 31-51 Protein denotes toll-like receptor 4
T25 3-11 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T79 145-153 Protein denotes SerpinB2
T78 53-57 Protein denotes TLR4
T77 31-51 Protein denotes toll-like receptor 4
T76 12-22 Gene_expression denotes expression
T75 3-11 Protein denotes SerpinB2
T57 145-153 Protein denotes SerpinB2
T56 53-57 Protein denotes TLR4
T55 31-51 Protein denotes toll-like receptor 4
T54 3-11 Protein denotes SerpinB2
R17 T75 T76 themeOf SerpinB2,expression
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4