> top > docs > PMC:3589482 > spans > 462-775 > annotations

PMC:3589482 / 462-775 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 155-163 NN denotes promoter
T855 146-154 CD denotes SerpinB2
T854 132-145 JJ denotes LPS-regulated
T853 128-131 DT denotes the
T852 124-127 VB denotes map
T851 121-123 TO denotes To
T850 119-120 . denotes .
T849 108-119 NNS denotes macrophages
T848 101-107 JJ denotes murine
T847 98-100 IN denotes in
T846 94-97 NNS denotes hrs
T845 91-93 CD denotes 24
T844 88-90 IN denotes of
T843 81-87 NN denotes period
T842 79-80 DT denotes a
T841 74-78 IN denotes over
T840 64-73 JJ denotes 1000-fold
T839 63-64 CD denotes ∼
T838 60-62 IN denotes by
T837 58-59 -RRB- denotes )
T836 54-58 CD denotes TLR4
T835 53-54 -LRB- denotes (
T834 51-52 CD denotes 4
T833 42-50 NN denotes receptor
T832 32-41 JJ denotes toll-like
T831 28-31 DT denotes the
T830 24-27 IN denotes via
T829 13-23 NN denotes expression
T828 4-12 NNP denotes SerpinB2
T883 304-308 IN denotes into
T882 296-303 NNS denotes mutants
T881 287-295 NN denotes deletion
T880 279-286 JJ denotes several
T879 275-278 CC denotes and
T878 270-274 NN denotes gene
T877 261-269 NNP denotes SerpinB2
T876 254-260 NN denotes murine
T875 250-253 DT denotes the
T874 247-249 IN denotes of
T873 240-246 NN denotes region
T872 231-239 VBG denotes flanking
T871 230-231 : denotes -
T870 229-230 '' denotes '
T869 228-229 CD denotes 5
T868 225-227 NN denotes kb
T867 223-224 CD denotes 5
T866 222-223 NN denotes ∼
T865 218-221 DT denotes the
T864 215-217 IN denotes by
T863 208-214 VBN denotes driven
T862 197-207 NNS denotes constructs
T861 188-196 NN denotes reporter
T860 176-187 VBD denotes transfected
T859 173-175 PRP denotes we
T858 171-172 , denotes ,
T857 164-171 NNS denotes regions
R415 T828 T829 compound SerpinB2,expression
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R426 T839 T838 pobj ∼,by
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected
R448 T861 T862 compound reporter,constructs
R449 T862 T860 dobj constructs,transfected
R450 T863 T862 acl driven,constructs
R451 T864 T863 agent by,driven
R452 T865 T873 det the,region
R453 T866 T868 nmod ∼,kb
R454 T867 T866 nummod 5,∼
R455 T868 T872 meta kb,flanking
R456 T869 T868 nummod 5,kb
R457 T870 T869 punct ',5
R458 T871 T872 punct -,flanking
R459 T872 T873 amod flanking,region
R460 T873 T864 pobj region,by
R461 T874 T873 prep of,region
R462 T875 T878 det the,gene
R463 T876 T878 compound murine,gene
R464 T877 T878 compound SerpinB2,gene
R465 T878 T874 pobj gene,of
R466 T879 T878 cc and,gene
R467 T880 T882 amod several,mutants
R468 T881 T882 compound deletion,mutants
R469 T882 T878 conj mutants,gene
R470 T883 T863 prep into,driven

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 91-93 CD denotes 24
T306 88-90 IN denotes of
T305 81-87 NN denotes period
T304 79-80 DT denotes a
T303 74-78 IN denotes over
T302 63-73 RB denotes ∼1000-fold
T301 60-62 IN denotes by
T300 58-59 -RRB- denotes )
T299 54-58 NN denotes TLR4
T298 53-54 -LRB- denotes (
T297 51-52 CD denotes 4
T296 42-50 NN denotes receptor
T295 32-41 JJ denotes toll-like
T294 28-31 DT denotes the
T293 24-27 IN denotes via
T292 13-23 NN denotes expression
T291 4-12 NN denotes SerpinB2
T340 304-308 IN denotes into
T339 296-303 NN denotes mutants
T338 287-295 NN denotes deletion
T337 279-286 JJ denotes several
T336 275-278 CC denotes and
T335 270-274 NN denotes gene
T334 261-269 NN denotes SerpinB2
T333 254-260 JJ denotes murine
T332 250-253 DT denotes the
T331 247-249 IN denotes of
T330 240-246 NN denotes region
T329 228-239 JJ denotes 5'-flanking
T328 225-227 NN denotes kb
T327 222-224 CD denotes ∼5
T326 218-221 DT denotes the
T325 215-217 IN denotes by
T324 208-214 VB denotes driven
T323 197-207 NN denotes constructs
T322 188-196 NN denotes reporter
T321 176-187 VB denotes transfected
T320 173-175 PRP denotes we
T319 171-172 -COMMA- denotes ,
T318 164-171 NN denotes regions
T317 155-163 NN denotes promoter
T316 146-154 NN denotes SerpinB2
T315 132-145 JJ denotes LPS-regulated
T314 128-131 DT denotes the
T313 124-127 VB denotes map
T312 121-123 TO denotes To
T311 108-119 NN denotes macrophages
T310 101-107 JJ denotes murine
T309 98-100 IN denotes in
T308 94-97 NN denotes hrs
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","
R133 T323 T321 arg2Of constructs,transfected
R134 T323 T322 arg1Of constructs,reporter
R135 T323 T324 arg2Of constructs,driven
R136 T330 T324 arg1Of region,driven
R137 T330 T325 arg2Of region,by
R138 T330 T326 arg1Of region,the
R139 T330 T327 arg1Of region,∼5
R140 T330 T328 arg1Of region,kb
R141 T330 T329 arg1Of region,5'-flanking
R142 T330 T331 arg1Of region,of
R143 T330 T340 arg1Of region,into
R144 T335 T332 arg1Of gene,the
R145 T335 T333 arg1Of gene,murine
R146 T335 T334 arg1Of gene,SerpinB2
R147 T335 T336 arg1Of gene,and
R148 T336 T331 arg2Of and,of
R149 T339 T336 arg2Of mutants,and
R150 T339 T337 arg1Of mutants,several
R151 T339 T338 arg1Of mutants,deletion

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T162 4-12 Protein denotes SerpinB2
T163 32-52 Protein denotes toll-like receptor 4
T164 54-58 Protein denotes TLR4
T165 146-154 Protein denotes SerpinB2
T166 261-269 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 54-58 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 4-12 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T532 146-154 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T533 261-269 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

simple1

Id Subject Object Predicate Lexical cue
T215 4-12 Protein denotes SerpinB2
T216 32-52 Protein denotes toll-like receptor 4
T217 54-58 Protein denotes TLR4
T218 146-154 Protein denotes SerpinB2
T219 261-269 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T513 13-23 Gene_expression denotes expression
T500 146-154 Protein denotes SerpinB2
T499 261-269 Protein denotes SerpinB2
T498 54-58 Protein denotes TLR4
T496 4-12 Protein denotes SerpinB2
T497 32-52 Protein denotes toll-like receptor 4
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T606 4-12 Protein denotes SerpinB2
T607 32-52 Protein denotes toll-like receptor 4
T608 54-58 Protein denotes TLR4
T609 261-269 Protein denotes SerpinB2
T610 146-154 Protein denotes SerpinB2
T623 13-23 Gene_expression denotes expression
R718 T606 T623 themeOf SerpinB2,expression

DLUT931

Id Subject Object Predicate Lexical cue
T572 4-12 Protein denotes SerpinB2
T573 32-52 Protein denotes toll-like receptor 4
T574 54-58 Protein denotes TLR4
T575 261-269 Protein denotes SerpinB2
T576 146-154 Protein denotes SerpinB2
T590 13-23 Gene_expression denotes expression
R685 T572 T590 themeOf SerpinB2,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 91-119 Localization denotes 24 hrs in murine macrophages
T759 4-23 Gene_expression denotes SerpinB2 expression
T753 261-269 Protein denotes SerpinB2
T748 4-12 Protein denotes SerpinB2
T714 28-59 Protein denotes the toll-like receptor 4 (TLR4)
T715 54-58 Protein denotes TLR4
T719 91-119 Protein denotes 24 hrs in murine macrophages
T720 146-154 Protein denotes SerpinB2
T724 101-119 Entity denotes murine macrophages
T729 128-172 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T741 132-145 Entity denotes LPS-regulated
T743 247-274 Protein denotes of the murine SerpinB2 gene
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T649 254-274 Protein denotes murine SerpinB2 gene
T648 146-163 Protein denotes SerpinB2 promoter
T646 13-23 Gene_expression denotes expression
T645 4-12 Protein denotes SerpinB2
R324 T645 T646 themeOf SerpinB2,expression

testone

Id Subject Object Predicate Lexical cue
T40 13-23 Gene_expression denotes expression
T29 261-269 Protein denotes SerpinB2
T28 146-154 Protein denotes SerpinB2
T27 54-58 Protein denotes TLR4
T26 32-52 Protein denotes toll-like receptor 4
T25 4-12 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T80 261-269 Protein denotes SerpinB2
T79 146-154 Protein denotes SerpinB2
T78 54-58 Protein denotes TLR4
T77 32-52 Protein denotes toll-like receptor 4
T76 13-23 Gene_expression denotes expression
T75 4-12 Protein denotes SerpinB2
T58 261-269 Protein denotes SerpinB2
T57 146-154 Protein denotes SerpinB2
T56 54-58 Protein denotes TLR4
T55 32-52 Protein denotes toll-like receptor 4
T54 4-12 Protein denotes SerpinB2
R17 T75 T76 themeOf SerpinB2,expression
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4