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PMC:3589482 / 45157-45369 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21962 211-212 . denotes .
T21961 203-211 NN denotes activity
T21960 194-202 NN denotes promoter
T21959 185-193 CD denotes SerpinB2
T21958 173-184 JJ denotes LPS-induced
T21957 163-172 VBZ denotes regulates
T21956 152-162 RB denotes negatively
T21955 148-151 CD denotes S64
T21954 145-147 IN denotes at
T21953 143-144 NN denotes β
T21952 142-143 : denotes -
T21951 137-142 NNP denotes C/EBP
T21950 134-136 IN denotes of
T21949 118-133 NN denotes phosphorylation
T21948 113-117 IN denotes that
T21947 102-112 VBG denotes indicating
T21946 100-101 , denotes ,
T21945 92-100 NN denotes activity
T21944 83-91 NN denotes promoter
T21943 74-82 NN denotes SerpinB2
T21942 62-73 JJ denotes LPS-induced
T21941 53-61 JJ denotes enhanced
T21940 39-52 RB denotes significantly
T21939 33-38 JJ denotes βS64A
T21938 32-33 : denotes -
T21937 27-32 NNP denotes C/EBP
T21936 24-26 IN denotes of
T21935 13-23 NN denotes expression
T21934 11-12 , denotes ,
T21933 3-11 NN denotes contrast
T21932 0-2 IN denotes In
R15793 T21932 T21947 prep In,indicating
R15794 T21933 T21932 pobj contrast,In
R15795 T21934 T21945 punct ",",activity
R15796 T21935 T21945 nmod expression,activity
R15797 T21949 T21957 nsubj phosphorylation,regulates
R15798 T21936 T21935 prep of,expression
R15799 T21937 T21936 pobj C/EBP,of
R15800 T21938 T21939 punct -,βS64A
R15801 T21939 T21945 amod βS64A,activity
R15802 T21950 T21949 prep of,phosphorylation
R15803 T21940 T21941 advmod significantly,enhanced
R15804 T21941 T21945 amod enhanced,activity
R15805 T21942 T21945 amod LPS-induced,activity
R15806 T21943 T21945 compound SerpinB2,activity
R15807 T21951 T21950 pobj C/EBP,of
R15808 T21944 T21945 compound promoter,activity
R15809 T21945 T21947 nsubj activity,indicating
R15810 T21952 T21953 punct -,β
R15811 T21946 T21947 punct ",",indicating
R15812 T21947 T21947 ROOT indicating,indicating
R15813 T21948 T21957 mark that,regulates
R15814 T21953 T21949 conj β,phosphorylation
R15815 T21954 T21949 prep at,phosphorylation
R15816 T21955 T21954 pobj S64,at
R15819 T21956 T21957 advmod negatively,regulates
R15822 T21957 T21947 ccomp regulates,indicating
R15825 T21958 T21961 amod LPS-induced,activity
R15829 T21959 T21961 nummod SerpinB2,activity
R15832 T21960 T21961 compound promoter,activity
R15836 T21961 T21957 dobj activity,regulates
R15839 T21962 T21947 punct .,indicating

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19679 203-211 NN denotes activity
T19678 194-202 NN denotes promoter
T19677 185-193 NN denotes SerpinB2
T19676 173-184 JJ denotes LPS-induced
T19675 163-172 VB denotes regulates
T19674 152-162 RB denotes negatively
T19673 148-151 NN denotes S64
T19672 145-147 IN denotes at
T19671 137-144 NN denotes C/EBP-β
T19670 134-136 IN denotes of
T19669 118-133 NN denotes phosphorylation
T19668 113-117 IN denotes that
T19667 102-112 VB denotes indicating
T19666 100-101 -COMMA- denotes ,
T19665 92-100 NN denotes activity
T19664 83-91 NN denotes promoter
T19663 74-82 NN denotes SerpinB2
T19662 62-73 JJ denotes LPS-induced
T19661 53-61 VB denotes enhanced
T19660 39-52 RB denotes significantly
T19659 27-38 NN denotes C/EBP-βS64A
T19658 24-26 IN denotes of
T19657 13-23 NN denotes expression
T19656 11-12 -COMMA- denotes ,
T19655 3-11 NN denotes contrast
T19654 0-2 IN denotes In
R14146 T19655 T19654 arg2Of contrast,In
R14147 T19657 T19658 arg1Of expression,of
R14148 T19657 T19661 arg1Of expression,enhanced
R14149 T19659 T19658 arg2Of C/EBP-βS64A,of
R14150 T19661 T19654 arg1Of enhanced,In
R14151 T19661 T19656 arg1Of enhanced,","
R14152 T19661 T19660 arg1Of enhanced,significantly
R14153 T19661 T19666 arg1Of enhanced,","
R14154 T19665 T19661 arg2Of activity,enhanced
R14155 T19665 T19662 arg1Of activity,LPS-induced
R14156 T19665 T19663 arg1Of activity,SerpinB2
R14157 T19665 T19664 arg1Of activity,promoter
R14158 T19667 T19661 arg3Of indicating,enhanced
R14159 T19669 T19670 arg1Of phosphorylation,of
R14160 T19669 T19672 arg1Of phosphorylation,at
R14161 T19669 T19675 arg1Of phosphorylation,regulates
R14162 T19671 T19670 arg2Of C/EBP-β,of
R14163 T19673 T19672 arg2Of S64,at
R14164 T19675 T19667 arg2Of regulates,indicating
R14165 T19675 T19668 arg1Of regulates,that
R14166 T19675 T19674 arg1Of regulates,negatively
R14167 T19679 T19675 arg2Of activity,regulates
R14168 T19679 T19676 arg1Of activity,LPS-induced
R14169 T19679 T19677 arg1Of activity,SerpinB2
R14170 T19679 T19678 arg1Of activity,promoter

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18771 185-193 Protein denotes SerpinB2
T18770 137-144 Protein denotes C/EBP-β
T18769 74-82 Protein denotes SerpinB2
T18768 27-38 Protein denotes C/EBP-βS64A

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20264 137-144 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T20234 185-193 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20233 74-82 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T18831 118-133 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T18504 0-212 Sentence denotes In contrast, expression of C/EBP-βS64A significantly enhanced LPS-induced SerpinB2 promoter activity, indicating that phosphorylation of C/EBP-β at S64 negatively regulates LPS-induced SerpinB2 promoter activity.
T269 0-212 Sentence denotes In contrast, expression of C/EBP-βS64A significantly enhanced LPS-induced SerpinB2 promoter activity, indicating that phosphorylation of C/EBP-β at S64 negatively regulates LPS-induced SerpinB2 promoter activity.

simple1

Id Subject Object Predicate Lexical cue
T18908 185-193 Protein denotes SerpinB2
T18907 137-144 Protein denotes C/EBP-β
T18906 74-82 Protein denotes SerpinB2
T18905 27-38 Protein denotes C/EBP-βS64A

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20191 163-172 Regulation denotes regulates
T20190 13-23 Gene_expression denotes expression
T20189 118-133 Phosphorylation denotes phosphorylation
T20188 62-73 Positive_regulation denotes LPS-induced
T20187 173-184 Positive_regulation denotes LPS-induced
T20186 53-61 Positive_regulation denotes enhanced
T20116 185-193 Protein denotes SerpinB2
T20115 137-144 Protein denotes C/EBP-β
T20114 74-82 Protein denotes SerpinB2
T20113 27-38 Protein denotes C/EBP-βS64A
R14557 T20113 T20190 themeOf C/EBP-βS64A,expression
R14558 T20114 T20186 themeOf SerpinB2,enhanced
R14559 T20114 T20188 themeOf SerpinB2,LPS-induced
R14560 T20115 T20189 themeOf C/EBP-β,phosphorylation
R14561 T20116 T20191 themeOf SerpinB2,regulates
R14562 T20116 T20187 themeOf SerpinB2,LPS-induced
R14605 T20187 T20191 themeOf LPS-induced,regulates
R14606 T20188 T20186 themeOf LPS-induced,enhanced
R14607 T20190 T20186 causeOf expression,enhanced
R14608 T20190 T20186 causeOf expression,enhanced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20631 13-23 Gene_expression denotes expression
T20630 118-133 Phosphorylation denotes phosphorylation
T20629 173-184 Positive_regulation denotes LPS-induced
T20628 163-172 Regulation denotes regulates
T20627 53-61 Positive_regulation denotes enhanced
T20626 62-73 Positive_regulation denotes LPS-induced
T20566 185-193 Protein denotes SerpinB2
T20565 137-144 Protein denotes C/EBP-β
T20564 74-82 Protein denotes SerpinB2
T20563 27-38 Protein denotes C/EBP-βS64A
R14769 T20563 T20631 themeOf C/EBP-βS64A,expression
R14770 T20564 T20626 themeOf SerpinB2,LPS-induced
R14771 T20565 T20630 themeOf C/EBP-β,phosphorylation
R14772 T20566 T20629 themeOf SerpinB2,LPS-induced
R14796 T20626 T20627 themeOf LPS-induced,enhanced
R14797 T20629 T20628 themeOf LPS-induced,regulates
R14798 T20630 T20628 causeOf phosphorylation,regulates

DLUT931

Id Subject Object Predicate Lexical cue
T20409 173-184 Positive_regulation denotes LPS-induced
T20408 163-172 Regulation denotes regulates
T20407 118-133 Phosphorylation denotes phosphorylation
T20406 62-73 Positive_regulation denotes LPS-induced
T20405 53-61 Positive_regulation denotes enhanced
T20404 13-23 Gene_expression denotes expression
T20340 185-193 Protein denotes SerpinB2
T20339 137-144 Protein denotes C/EBP-β
T20338 74-82 Protein denotes SerpinB2
T20337 27-38 Protein denotes C/EBP-βS64A
R14651 T20337 T20404 themeOf C/EBP-βS64A,expression
R14652 T20338 T20406 themeOf SerpinB2,LPS-induced
R14653 T20339 T20407 themeOf C/EBP-β,phosphorylation
R14654 T20340 T20408 themeOf SerpinB2,regulates
R14655 T20340 T20409 themeOf SerpinB2,LPS-induced
R14691 T20404 T20405 themeOf expression,enhanced
R14692 T20406 T20405 themeOf LPS-induced,enhanced
R14693 T20407 T20408 causeOf phosphorylation,regulates
R14694 T20407 T20408 causeOf phosphorylation,regulates
R14695 T20409 T20408 themeOf LPS-induced,regulates

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21112 13-38 Gene_expression denotes expression of C/EBP-βS64A
T21106 0-100 Positive_regulation denotes In contrast, expression of C/EBP-βS64A significantly enhanced LPS-induced SerpinB2 promoter activity
T21105 102-211 Regulation denotes indicating that phosphorylation of C/EBP-β at S64 negatively regulates LPS-induced SerpinB2 promoter activity
T21099 118-151 Phosphorylation denotes phosphorylation of C/EBP-β at S64
T21051 173-184 Entity denotes LPS-induced
T21031 74-91 Entity denotes SerpinB2 promoter
T20997 24-38 Protein denotes of C/EBP-βS64A
T20974 185-193 Protein denotes SerpinB2
T20939 148-151 Entity denotes S64
T20931 74-82 Protein denotes SerpinB2
T20924 185-202 Entity denotes SerpinB2 promoter
T20915 134-144 Protein denotes of C/EBP-β
T20909 62-73 Entity denotes LPS-induced
R14935 T20915 T21099 themeOf of C/EBP-β,phosphorylation of C/EBP-β at S64
R14939 T20939 T20915 partOf S64,of C/EBP-β
R14940 T20939 T21099 siteOf S64,phosphorylation of C/EBP-β at S64
R14955 T20997 T21112 themeOf of C/EBP-βS64A,expression of C/EBP-βS64A
R14976 T21099 T21105 causeOf phosphorylation of C/EBP-β at S64,indicating that phosphorylation of C/EBP-β at S64 negatively regulates LPS-induced SerpinB2 promoter activity
R14980 T21112 T21106 causeOf expression of C/EBP-βS64A,"In contrast, expression of C/EBP-βS64A significantly enhanced LPS-induced SerpinB2 promoter activity"

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20744 163-172 Regulation denotes regulates
T20743 118-133 Phosphorylation denotes phosphorylation
T20742 53-61 Positive_regulation denotes enhanced
T20741 13-23 Gene_expression denotes expression
T20740 185-202 Protein denotes SerpinB2 promoter
T20739 137-144 Protein denotes C/EBP-β
T20738 74-91 Protein denotes SerpinB2 promoter
T20737 27-38 Protein denotes C/EBP-βS64A
R14851 T20737 T20741 themeOf C/EBP-βS64A,expression
R14852 T20738 T20742 themeOf SerpinB2 promoter,enhanced
R14853 T20739 T20743 themeOf C/EBP-β,phosphorylation
R14854 T20741 T20742 causeOf expression,enhanced
R14855 T20743 T20744 themeOf phosphorylation,regulates

testone

Id Subject Object Predicate Lexical cue
T18274 118-133 Phosphorylation denotes phosphorylation
T18273 13-23 Gene_expression denotes expression
T18219 185-193 Protein denotes SerpinB2
T18218 137-144 Protein denotes C/EBP-β
T18217 74-82 Protein denotes SerpinB2
T18216 27-38 Protein denotes C/EBP-βS64A
R13138 T18216 T18273 themeOf C/EBP-βS64A,expression
R13139 T18218 T18274 themeOf C/EBP-β,phosphorylation

test3

Id Subject Object Predicate Lexical cue
T18452 185-193 Protein denotes SerpinB2
T18451 177-184 Positive_regulation denotes induced
T18450 163-172 Regulation denotes regulates
T18449 137-144 Protein denotes C/EBP-β
T18448 118-133 Phosphorylation denotes phosphorylation
T18447 74-82 Protein denotes SerpinB2
T18446 66-73 Positive_regulation denotes induced
T18445 53-61 Positive_regulation denotes enhanced
T18444 27-38 Protein denotes C/EBP-βS64A
T18443 13-23 Gene_expression denotes expression
T18336 185-193 Protein denotes SerpinB2
T18335 137-144 Protein denotes C/EBP-β
T18334 74-82 Protein denotes SerpinB2
T18333 27-38 Protein denotes C/EBP-βS64A
R13209 T18443 T18445 causeOf expression,enhanced
R13210 T18444 T18443 themeOf C/EBP-βS64A,expression
R13211 T18446 T18445 themeOf induced,enhanced
R13212 T18448 T18450 causeOf phosphorylation,regulates
R13213 T18449 T18448 themeOf C/EBP-β,phosphorylation
R13214 T18451 T18450 themeOf induced,regulates