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PMC:3589482 / 431-638 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 186-194 NN denotes promoter
T855 177-185 CD denotes SerpinB2
T854 163-176 JJ denotes LPS-regulated
T853 159-162 DT denotes the
T852 155-158 VB denotes map
T851 152-154 TO denotes To
T850 150-151 . denotes .
T849 139-150 NNS denotes macrophages
T848 132-138 JJ denotes murine
T847 129-131 IN denotes in
T846 125-128 NNS denotes hrs
T845 122-124 CD denotes 24
T844 119-121 IN denotes of
T843 112-118 NN denotes period
T842 110-111 DT denotes a
T841 105-109 IN denotes over
T840 95-104 JJ denotes 1000-fold
T839 94-95 CD denotes ∼
T838 91-93 IN denotes by
T837 89-90 -RRB- denotes )
T836 85-89 CD denotes TLR4
T835 84-85 -LRB- denotes (
T834 82-83 CD denotes 4
T833 73-81 NN denotes receptor
T832 63-72 JJ denotes toll-like
T831 59-62 DT denotes the
T830 55-58 IN denotes via
T829 44-54 NN denotes expression
T828 35-43 NNP denotes SerpinB2
T827 28-34 VB denotes induce
T826 24-27 MD denotes can
T825 22-23 , denotes ,
T824 13-22 NN denotes endotoxin
T823 3-12 JJ denotes bacterial
T859 204-206 PRP denotes we
T858 202-203 , denotes ,
T857 195-202 NNS denotes regions
R410 T823 T824 amod bacterial,endotoxin
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R425 T838 T827 prep by,induce
R426 T839 T838 pobj ∼,by
R427 T840 T827 advcl 1000-fold,induce
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R437 T850 T827 punct .,induce
R438 T851 T852 aux To,map
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 122-124 CD denotes 24
T306 119-121 IN denotes of
T305 112-118 NN denotes period
T304 110-111 DT denotes a
T303 105-109 IN denotes over
T302 94-104 RB denotes ∼1000-fold
T301 91-93 IN denotes by
T300 89-90 -RRB- denotes )
T299 85-89 NN denotes TLR4
T298 84-85 -LRB- denotes (
T297 82-83 CD denotes 4
T296 73-81 NN denotes receptor
T295 63-72 JJ denotes toll-like
T294 59-62 DT denotes the
T293 55-58 IN denotes via
T292 44-54 NN denotes expression
T291 35-43 NN denotes SerpinB2
T290 28-34 VB denotes induce
T289 24-27 MD denotes can
T288 22-23 -COMMA- denotes ,
T287 13-22 NN denotes endotoxin
T286 3-12 JJ denotes bacterial
T320 204-206 PRP denotes we
T319 202-203 -COMMA- denotes ,
T318 195-202 NN denotes regions
T317 186-194 NN denotes promoter
T316 177-185 NN denotes SerpinB2
T315 163-176 JJ denotes LPS-regulated
T314 159-162 DT denotes the
T313 155-158 VB denotes map
T312 152-154 TO denotes To
T311 139-150 NN denotes macrophages
T310 132-138 JJ denotes murine
T309 129-131 IN denotes in
T308 125-128 NN denotes hrs
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R103 T290 T301 arg1Of induce,by
R104 T290 T303 arg1Of induce,over
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T162 35-43 Protein denotes SerpinB2
T163 63-83 Protein denotes toll-like receptor 4
T164 85-89 Protein denotes TLR4
T165 177-185 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 85-89 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 35-43 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T532 177-185 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

simple1

Id Subject Object Predicate Lexical cue
T215 35-43 Protein denotes SerpinB2
T216 63-83 Protein denotes toll-like receptor 4
T217 85-89 Protein denotes TLR4
T218 177-185 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T514 28-34 Positive_regulation denotes induce
T513 44-54 Gene_expression denotes expression
T500 177-185 Protein denotes SerpinB2
T498 85-89 Protein denotes TLR4
T496 35-43 Protein denotes SerpinB2
T497 63-83 Protein denotes toll-like receptor 4
R308 T513 T514 themeOf expression,induce
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T606 35-43 Protein denotes SerpinB2
T607 63-83 Protein denotes toll-like receptor 4
T608 85-89 Protein denotes TLR4
T610 177-185 Protein denotes SerpinB2
T623 44-54 Gene_expression denotes expression
T624 28-34 Positive_regulation denotes induce
R718 T606 T623 themeOf SerpinB2,expression
R720 T607 T624 causeOf toll-like receptor 4,induce
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T572 35-43 Protein denotes SerpinB2
T573 63-83 Protein denotes toll-like receptor 4
T574 85-89 Protein denotes TLR4
T576 177-185 Protein denotes SerpinB2
T590 44-54 Gene_expression denotes expression
T591 28-34 Positive_regulation denotes induce
R685 T572 T590 themeOf SerpinB2,expression
R686 T573 T591 causeOf toll-like receptor 4,induce
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 122-150 Localization denotes 24 hrs in murine macrophages
T759 35-54 Gene_expression denotes SerpinB2 expression
T748 35-43 Protein denotes SerpinB2
T711 13-22 Entity denotes endotoxin
T714 59-90 Protein denotes the toll-like receptor 4 (TLR4)
T715 85-89 Protein denotes TLR4
T719 122-150 Protein denotes 24 hrs in murine macrophages
T720 177-185 Protein denotes SerpinB2
T724 132-150 Entity denotes murine macrophages
T729 159-203 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T741 163-176 Entity denotes LPS-regulated
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T648 177-194 Protein denotes SerpinB2 promoter
T647 28-34 Positive_regulation denotes induce
T646 44-54 Gene_expression denotes expression
T645 35-43 Protein denotes SerpinB2
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce

testone

Id Subject Object Predicate Lexical cue
T40 44-54 Gene_expression denotes expression
T39 28-34 Positive_regulation denotes induce
T28 177-185 Protein denotes SerpinB2
T27 85-89 Protein denotes TLR4
T26 63-83 Protein denotes toll-like receptor 4
T25 35-43 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R8 T40 T39 themeOf expression,induce
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T79 177-185 Protein denotes SerpinB2
T78 85-89 Protein denotes TLR4
T77 63-83 Protein denotes toll-like receptor 4
T76 44-54 Gene_expression denotes expression
T75 35-43 Protein denotes SerpinB2
T74 28-34 Positive_regulation denotes induce
T57 177-185 Protein denotes SerpinB2
T56 85-89 Protein denotes TLR4
T55 63-83 Protein denotes toll-like receptor 4
T54 35-43 Protein denotes SerpinB2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4