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PMC:3589482 / 42054-42356 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21408 301-302 . denotes .
T21407 298-301 CD denotes 539
T21406 297-298 CD denotes −
T21405 293-296 CC denotes and
T21404 289-292 CD denotes 189
T21403 288-289 VBP denotes −
T21402 276-287 NNS denotes nucleotides
T21401 268-275 IN denotes between
T21400 261-267 NN denotes region
T21399 257-260 DT denotes the
T21398 254-256 IN denotes in
T21397 244-253 NNS denotes sequences
T21396 233-243 JJ denotes regulatory
T21395 222-232 JJ denotes cis-acting
T21394 217-221 IN denotes upon
T21393 207-216 JJ denotes dependent
T21392 204-206 VBZ denotes is
T21391 195-203 NN denotes response
T21390 181-194 JJ denotes LPS-inducible
T21389 177-180 DT denotes the
T21388 174-176 IN denotes of
T21387 169-173 JJS denotes most
T21386 167-168 , denotes ,
T21385 162-167 NNS denotes sites
T21384 156-161 DT denotes these
T21383 145-155 VBG denotes containing
T21382 136-144 NN denotes promoter
T21381 127-135 NNP denotes SerpinB2
T21380 120-126 NN denotes murine
T21379 116-119 DT denotes the
T21378 113-115 IN denotes of
T21377 105-112 NNS denotes regions
T21376 102-104 IN denotes by
T21375 92-101 VBN denotes conferred
T21374 83-91 NN denotes activity
T21373 67-82 JJ denotes transcriptional
T21372 55-66 JJ denotes PMA-induced
T21371 52-54 IN denotes in
T21370 42-51 NNS denotes increases
T21369 30-41 JJ denotes incremental
T21368 27-29 IN denotes of
T21367 19-26 NN denotes pattern
T21366 15-18 DT denotes the
T21365 12-14 TO denotes to
T21364 3-11 NN denotes contrast
T21363 0-2 IN denotes In
R15224 T21363 T21403 prep In,−
R15225 T21364 T21363 pobj contrast,In
R15226 T21365 T21364 prep to,contrast
R15227 T21366 T21367 det the,pattern
R15228 T21367 T21365 pobj pattern,to
R15229 T21368 T21367 prep of,pattern
R15230 T21369 T21370 amod incremental,increases
R15231 T21370 T21368 pobj increases,of
R15232 T21371 T21370 prep in,increases
R15233 T21372 T21374 amod PMA-induced,activity
R15234 T21373 T21374 amod transcriptional,activity
R15235 T21374 T21371 pobj activity,in
R15236 T21375 T21370 acl conferred,increases
R15237 T21376 T21375 agent by,conferred
R15238 T21377 T21376 pobj regions,by
R15239 T21378 T21377 prep of,regions
R15240 T21379 T21382 det the,promoter
R15241 T21380 T21382 compound murine,promoter
R15242 T21381 T21382 compound SerpinB2,promoter
R15243 T21382 T21378 pobj promoter,of
R15244 T21383 T21382 acl containing,promoter
R15245 T21384 T21385 det these,sites
R15246 T21385 T21383 dobj sites,containing
R15247 T21386 T21385 punct ",",sites
R15248 T21387 T21393 nsubjpass most,dependent
R15249 T21388 T21387 prep of,most
R15250 T21389 T21391 det the,response
R15251 T21390 T21391 amod LPS-inducible,response
R15252 T21391 T21388 pobj response,of
R15253 T21392 T21393 auxpass is,dependent
R15254 T21393 T21367 amod dependent,pattern
R15255 T21394 T21393 prep upon,dependent
R15256 T21395 T21397 amod cis-acting,sequences
R15257 T21396 T21397 amod regulatory,sequences
R15258 T21397 T21394 pobj sequences,upon
R15259 T21398 T21397 prep in,sequences
R15260 T21399 T21400 det the,region
R15261 T21400 T21398 pobj region,in
R15262 T21401 T21403 mark between,−
R15263 T21402 T21403 nsubj nucleotides,−
R15264 T21403 T21403 ROOT −,−
R15265 T21404 T21403 dobj 189,−
R15266 T21405 T21404 cc and,189
R15267 T21406 T21404 conj −,189
R15268 T21407 T21404 conj 539,189
R15269 T21408 T21403 punct .,−

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19189 297-301 CD denotes −539
T19188 293-296 CC denotes and
T19187 288-292 CD denotes −189
T19186 276-287 NN denotes nucleotides
T19185 268-275 IN denotes between
T19184 261-267 NN denotes region
T19183 257-260 DT denotes the
T19182 254-256 IN denotes in
T19181 244-253 NN denotes sequences
T19180 233-243 JJ denotes regulatory
T19179 222-232 JJ denotes cis-acting
T19178 217-221 IN denotes upon
T19177 207-216 JJ denotes dependent
T19176 204-206 VB denotes is
T19175 195-203 NN denotes response
T19174 181-194 JJ denotes LPS-inducible
T19173 177-180 DT denotes the
T19172 174-176 IN denotes of
T19171 169-173 JJ denotes most
T19170 167-168 -COMMA- denotes ,
T19169 162-167 NN denotes sites
T19168 156-161 DT denotes these
T19167 145-155 VB denotes containing
T19166 136-144 NN denotes promoter
T19165 127-135 NN denotes SerpinB2
T19164 120-126 JJ denotes murine
T19163 116-119 DT denotes the
T19162 113-115 IN denotes of
T19161 105-112 NN denotes regions
T19160 102-104 IN denotes by
T19159 92-101 VB denotes conferred
T19158 83-91 NN denotes activity
T19157 67-82 JJ denotes transcriptional
T19156 55-66 JJ denotes PMA-induced
T19155 52-54 IN denotes in
T19154 42-51 NN denotes increases
T19153 30-41 JJ denotes incremental
T19152 27-29 IN denotes of
T19151 19-26 NN denotes pattern
T19150 15-18 DT denotes the
T19149 12-14 TO denotes to
T19148 3-11 NN denotes contrast
T19147 0-2 IN denotes In
R13615 T19147 T19149 arg1Of In,to
R13616 T19148 T19147 arg2Of contrast,In
R13617 T19151 T19147 arg3Of pattern,In
R13618 T19151 T19150 arg1Of pattern,the
R13619 T19151 T19152 arg1Of pattern,of
R13620 T19154 T19152 arg2Of increases,of
R13621 T19154 T19153 arg1Of increases,incremental
R13622 T19154 T19155 arg1Of increases,in
R13623 T19158 T19155 arg2Of activity,in
R13624 T19158 T19156 arg1Of activity,PMA-induced
R13625 T19158 T19157 arg1Of activity,transcriptional
R13626 T19158 T19159 arg2Of activity,conferred
R13627 T19161 T19159 arg1Of regions,conferred
R13628 T19161 T19160 arg2Of regions,by
R13629 T19161 T19162 arg1Of regions,of
R13630 T19166 T19162 arg2Of promoter,of
R13631 T19166 T19163 arg1Of promoter,the
R13632 T19166 T19164 arg1Of promoter,murine
R13633 T19166 T19165 arg1Of promoter,SerpinB2
R13634 T19166 T19167 arg1Of promoter,containing
R13635 T19169 T19167 arg2Of sites,containing
R13636 T19169 T19168 arg1Of sites,these
R13637 T19171 T19172 arg1Of most,of
R13638 T19171 T19176 arg1Of most,is
R13639 T19171 T19177 arg1Of most,dependent
R13640 T19175 T19172 arg2Of response,of
R13641 T19175 T19173 arg1Of response,the
R13642 T19175 T19174 arg1Of response,LPS-inducible
R13643 T19176 T19147 arg1Of is,In
R13644 T19176 T19170 arg1Of is,","
R13645 T19177 T19176 arg2Of dependent,is
R13646 T19177 T19178 arg1Of dependent,upon
R13647 T19181 T19178 arg2Of sequences,upon
R13648 T19181 T19179 arg1Of sequences,cis-acting
R13649 T19181 T19180 arg1Of sequences,regulatory
R13650 T19181 T19182 arg1Of sequences,in
R13651 T19184 T19182 arg2Of region,in
R13652 T19184 T19183 arg1Of region,the
R13653 T19184 T19185 arg1Of region,between
R13654 T19187 T19188 arg1Of −189,and
R13655 T19188 T19185 arg2Of and,between
R13656 T19188 T19186 arg1Of and,nucleotides
R13657 T19189 T19188 arg2Of −539,and

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T18709 177-203 Anaphor denotes the LPS-inducible response

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18732 127-135 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20218 127-135 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T18488 0-302 Sentence denotes In contrast to the pattern of incremental increases in PMA-induced transcriptional activity conferred by regions of the murine SerpinB2 promoter containing these sites, most of the LPS-inducible response is dependent upon cis-acting regulatory sequences in the region between nucleotides −189 and −539.
T253 0-302 Sentence denotes In contrast to the pattern of incremental increases in PMA-induced transcriptional activity conferred by regions of the murine SerpinB2 promoter containing these sites, most of the LPS-inducible response is dependent upon cis-acting regulatory sequences in the region between nucleotides −189 and −539.

simple1

Id Subject Object Predicate Lexical cue
T18869 127-135 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20077 127-135 Protein denotes SerpinB2
T20153 42-51 Positive_regulation denotes increases
R14516 T20077 T20153 themeOf SerpinB2,increases

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20527 127-135 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T20301 127-135 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21045 55-58 Entity denotes PMA
T21026 174-194 Entity denotes of the LPS-inducible
T21017 113-168 Entity denotes of the murine SerpinB2 promoter containing these sites,
T20994 156-167 Entity denotes these sites
T20937 169-194 Entity denotes most of the LPS-inducible
T20907 127-135 Protein denotes SerpinB2
T20906 276-292 Entity denotes nucleotides −189

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20671 120-144 Protein denotes murine SerpinB2 promoter

testone

Id Subject Object Predicate Lexical cue
T18180 127-135 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T18378 127-135 Protein denotes SerpinB2
T18297 127-135 Protein denotes SerpinB2