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PMC:3589482 / 41941-42053 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21362 111-112 . denotes .
T21361 107-111 NN denotes gene
T21360 98-106 NNP denotes SerpinB2
T21359 91-97 NN denotes murine
T21358 87-90 DT denotes the
T21357 84-86 IN denotes of
T21356 70-83 NN denotes transcription
T21355 56-69 JJ denotes PMA-inducible
T21354 46-55 VBG denotes mediating
T21353 43-45 IN denotes in
T21352 38-42 NN denotes role
T21351 36-37 DT denotes a
T21350 31-35 VB denotes play
T21349 26-30 RB denotes also
T21348 16-25 RB denotes therefore
T21347 12-15 MD denotes may
T21346 6-11 NNS denotes sites
T21345 0-5 DT denotes These
R15206 T21345 T21346 det These,sites
R15207 T21346 T21350 nsubj sites,play
R15208 T21347 T21350 aux may,play
R15209 T21348 T21350 advmod therefore,play
R15210 T21349 T21350 advmod also,play
R15211 T21350 T21350 ROOT play,play
R15212 T21351 T21352 det a,role
R15213 T21352 T21350 dobj role,play
R15214 T21353 T21352 prep in,role
R15215 T21354 T21353 pcomp mediating,in
R15216 T21355 T21356 amod PMA-inducible,transcription
R15217 T21356 T21354 dobj transcription,mediating
R15218 T21357 T21356 prep of,transcription
R15219 T21358 T21361 det the,gene
R15220 T21359 T21361 compound murine,gene
R15221 T21360 T21361 compound SerpinB2,gene
R15222 T21361 T21357 pobj gene,of
R15223 T21362 T21350 punct .,play

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19146 107-111 NN denotes gene
T19145 98-106 NN denotes SerpinB2
T19144 91-97 JJ denotes murine
T19143 87-90 DT denotes the
T19142 84-86 IN denotes of
T19141 70-83 NN denotes transcription
T19140 56-69 JJ denotes PMA-inducible
T19139 46-55 VB denotes mediating
T19138 43-45 IN denotes in
T19137 38-42 NN denotes role
T19136 36-37 DT denotes a
T19135 31-35 VB denotes play
T19134 26-30 RB denotes also
T19133 16-25 RB denotes therefore
T19132 12-15 MD denotes may
T19131 6-11 NN denotes sites
T19130 0-5 DT denotes These
R13598 T19131 T19130 arg1Of sites,These
R13599 T19131 T19132 arg1Of sites,may
R13600 T19131 T19135 arg1Of sites,play
R13601 T19135 T19132 arg2Of play,may
R13602 T19135 T19133 arg1Of play,therefore
R13603 T19135 T19134 arg1Of play,also
R13604 T19135 T19138 arg1Of play,in
R13605 T19137 T19135 arg2Of role,play
R13606 T19137 T19136 arg1Of role,a
R13607 T19139 T19138 arg2Of mediating,in
R13608 T19141 T19139 arg2Of transcription,mediating
R13609 T19141 T19140 arg1Of transcription,PMA-inducible
R13610 T19141 T19142 arg1Of transcription,of
R13611 T19146 T19142 arg2Of gene,of
R13612 T19146 T19143 arg1Of gene,the
R13613 T19146 T19144 arg1Of gene,murine
R13614 T19146 T19145 arg1Of gene,SerpinB2

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18731 98-106 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20217 98-106 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T18801 70-83 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T18487 0-112 Sentence denotes These sites may therefore also play a role in mediating PMA-inducible transcription of the murine SerpinB2 gene.
T252 0-112 Sentence denotes These sites may therefore also play a role in mediating PMA-inducible transcription of the murine SerpinB2 gene.

simple1

Id Subject Object Predicate Lexical cue
T18868 98-106 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20076 98-106 Protein denotes SerpinB2
T20152 46-55 Positive_regulation denotes mediating
T20151 70-83 Transcription denotes transcription
T20150 38-42 Regulation denotes role
T20149 56-69 Positive_regulation denotes PMA-inducible
R14515 T20076 T20151 themeOf SerpinB2,transcription
R14580 T20151 T20152 themeOf transcription,mediating
R14581 T20151 T20149 themeOf transcription,PMA-inducible
R14582 T20152 T20150 themeOf mediating,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20526 98-106 Protein denotes SerpinB2
T20593 70-83 Transcription denotes transcription
T20595 46-55 Positive_regulation denotes mediating
T20594 56-69 Positive_regulation denotes PMA-inducible
R14736 T20526 T20593 themeOf SerpinB2,transcription
R14782 T20593 T20595 themeOf transcription,mediating
R14783 T20593 T20594 themeOf transcription,PMA-inducible

DLUT931

Id Subject Object Predicate Lexical cue
T20374 56-69 Positive_regulation denotes PMA-inducible
T20373 46-55 Positive_regulation denotes mediating
T20372 70-83 Transcription denotes transcription
T20300 98-106 Protein denotes SerpinB2
R14625 T20300 T20372 themeOf SerpinB2,transcription
R14674 T20372 T20373 themeOf transcription,mediating
R14675 T20372 T20374 themeOf transcription,PMA-inducible

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21095 56-111 Transcription denotes PMA-inducible transcription of the murine SerpinB2 gene
T21084 46-111 Regulation denotes mediating PMA-inducible transcription of the murine SerpinB2 gene
T21015 98-106 Protein denotes SerpinB2
T21002 84-111 Protein denotes of the murine SerpinB2 gene
T20967 0-11 Entity denotes These sites
R14957 T21002 T21095 themeOf of the murine SerpinB2 gene,PMA-inducible transcription of the murine SerpinB2 gene
R14975 T21095 T21084 themeOf PMA-inducible transcription of the murine SerpinB2 gene,mediating PMA-inducible transcription of the murine SerpinB2 gene

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20670 46-55 Positive_regulation denotes mediating
T20669 70-83 Transcription denotes transcription
T20668 91-111 Protein denotes murine SerpinB2 gene
R14817 T20668 T20669 themeOf murine SerpinB2 gene,transcription
R14818 T20669 T20670 themeOf transcription,mediating

testone

Id Subject Object Predicate Lexical cue
T18245 70-83 Transcription denotes transcription
T18244 60-69 Positive_regulation denotes inducible
T18179 98-106 Protein denotes SerpinB2
R13113 T18179 T18245 themeOf SerpinB2,transcription
R13147 T18245 T18244 themeOf transcription,inducible

test3

Id Subject Object Predicate Lexical cue
T18377 98-106 Protein denotes SerpinB2
T18296 98-106 Protein denotes SerpinB2