PMC:3589482 / 41214-41443
Annnotations
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T21261 | 228-229 | . | denotes | . |
T21260 | 225-228 | NNP | denotes | LPS |
T21259 | 222-224 | TO | denotes | to |
T21258 | 213-221 | NN | denotes | response |
T21257 | 209-212 | DT | denotes | the |
T21256 | 205-208 | CC | denotes | and |
T21255 | 191-204 | NN | denotes | transcription |
T21254 | 186-190 | NN | denotes | gene |
T21253 | 177-185 | NNP | denotes | SerpinB2 |
T21252 | 164-176 | JJ | denotes | constitutive |
T21251 | 154-163 | VBZ | denotes | abrogates |
T21250 | 152-153 | NN | denotes | β |
T21249 | 151-152 | : | denotes | - |
T21248 | 146-151 | NNP | denotes | C/EBP |
T21247 | 143-145 | IN | denotes | of |
T21246 | 138-142 | NN | denotes | loss |
T21245 | 134-137 | CC | denotes | and |
T21244 | 132-133 | , | denotes | , |
T21243 | 128-132 | NN | denotes | vivo |
T21242 | 125-127 | IN | denotes | in |
T21241 | 121-124 | CC | denotes | and |
T21240 | 115-120 | NN | denotes | vitro |
T21239 | 112-114 | IN | denotes | in |
T21238 | 103-111 | NN | denotes | promoter |
T21237 | 94-102 | JJ | denotes | proximal |
T21236 | 85-93 | NNP | denotes | SerpinB2 |
T21235 | 81-84 | DT | denotes | the |
T21234 | 78-80 | IN | denotes | in |
T21233 | 70-77 | NN | denotes | element |
T21232 | 61-69 | NN | denotes | response |
T21231 | 55-60 | NNP | denotes | C/EBP |
T21230 | 51-54 | DT | denotes | the |
T21229 | 46-50 | NN | denotes | bind |
T21228 | 33-45 | RB | denotes | specifically |
T21227 | 30-32 | TO | denotes | to |
T21226 | 24-29 | VBN | denotes | shown |
T21225 | 20-23 | VBD | denotes | was |
T21224 | 18-19 | NN | denotes | β |
T21223 | 17-18 | : | denotes | - |
T21222 | 12-17 | NNP | denotes | C/EBP |
T21221 | 0-11 | JJ | denotes | LPS-induced |
R15082 | T21221 | T21224 | amod | LPS-induced,β |
R15083 | T21222 | T21224 | compound | C/EBP,β |
R15084 | T21223 | T21224 | punct | -,β |
R15085 | T21224 | T21226 | nsubjpass | β,shown |
R15086 | T21225 | T21226 | auxpass | was,shown |
R15087 | T21226 | T21226 | ROOT | shown,shown |
R15088 | T21227 | T21229 | aux | to,bind |
R15089 | T21228 | T21229 | advmod | specifically,bind |
R15090 | T21229 | T21226 | xcomp | bind,shown |
R15091 | T21230 | T21233 | det | the,element |
R15092 | T21231 | T21233 | compound | C/EBP,element |
R15093 | T21232 | T21233 | compound | response,element |
R15094 | T21233 | T21229 | dobj | element,bind |
R15095 | T21234 | T21233 | prep | in,element |
R15096 | T21235 | T21238 | det | the,promoter |
R15097 | T21236 | T21238 | nmod | SerpinB2,promoter |
R15098 | T21237 | T21238 | amod | proximal,promoter |
R15099 | T21238 | T21234 | pobj | promoter,in |
R15100 | T21239 | T21233 | prep | in,element |
R15101 | T21240 | T21239 | pobj | vitro,in |
R15102 | T21241 | T21239 | cc | and,in |
R15103 | T21242 | T21239 | conj | in,in |
R15104 | T21243 | T21242 | pobj | vivo,in |
R15105 | T21244 | T21242 | punct | ",",in |
R15106 | T21245 | T21242 | cc | and,in |
R15107 | T21246 | T21242 | conj | loss,in |
R15108 | T21247 | T21246 | prep | of,loss |
R15109 | T21248 | T21250 | compound | C/EBP,β |
R15110 | T21249 | T21250 | punct | -,β |
R15111 | T21250 | T21251 | compound | β,abrogates |
R15112 | T21251 | T21229 | dobj | abrogates,bind |
R15113 | T21252 | T21255 | amod | constitutive,transcription |
R15114 | T21253 | T21255 | compound | SerpinB2,transcription |
R15115 | T21254 | T21255 | compound | gene,transcription |
R15116 | T21255 | T21251 | dobj | transcription,abrogates |
R15117 | T21256 | T21255 | cc | and,transcription |
R15118 | T21257 | T21258 | det | the,response |
R15119 | T21258 | T21255 | conj | response,transcription |
R15120 | T21259 | T21258 | prep | to,response |
R15121 | T21260 | T21259 | pobj | LPS,to |
R15122 | T21261 | T21226 | punct | .,shown |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T19051 | 225-228 | NN | denotes | LPS |
T19050 | 222-224 | TO | denotes | to |
T19049 | 213-221 | NN | denotes | response |
T19048 | 209-212 | DT | denotes | the |
T19047 | 205-208 | CC | denotes | and |
T19046 | 191-204 | NN | denotes | transcription |
T19045 | 186-190 | NN | denotes | gene |
T19044 | 177-185 | NN | denotes | SerpinB2 |
T19043 | 164-176 | JJ | denotes | constitutive |
T19042 | 154-163 | VB | denotes | abrogates |
T19041 | 146-153 | NN | denotes | C/EBP-β |
T19040 | 143-145 | IN | denotes | of |
T19039 | 138-142 | NN | denotes | loss |
T19038 | 134-137 | CC | denotes | and |
T19037 | 132-133 | -COMMA- | denotes | , |
T19036 | 128-132 | FW | denotes | vivo |
T19035 | 125-127 | FW | denotes | in |
T19034 | 121-124 | CC | denotes | and |
T19033 | 115-120 | FW | denotes | vitro |
T19032 | 112-114 | FW | denotes | in |
T19031 | 103-111 | NN | denotes | promoter |
T19030 | 94-102 | JJ | denotes | proximal |
T19029 | 85-93 | NN | denotes | SerpinB2 |
T19028 | 81-84 | DT | denotes | the |
T19027 | 78-80 | IN | denotes | in |
T19026 | 70-77 | NN | denotes | element |
T19025 | 61-69 | NN | denotes | response |
T19024 | 55-60 | NN | denotes | C/EBP |
T19023 | 51-54 | DT | denotes | the |
T19022 | 46-50 | VB | denotes | bind |
T19021 | 33-45 | RB | denotes | specifically |
T19020 | 30-32 | TO | denotes | to |
T19019 | 24-29 | VB | denotes | shown |
T19018 | 20-23 | VB | denotes | was |
T19017 | 12-19 | NN | denotes | C/EBP-β |
T19016 | 0-11 | JJ | denotes | LPS-induced |
R13479 | T19017 | T19016 | arg1Of | C/EBP-β,LPS-induced |
R13480 | T19017 | T19018 | arg1Of | C/EBP-β,was |
R13481 | T19017 | T19019 | arg2Of | C/EBP-β,shown |
R13482 | T19017 | T19022 | arg1Of | C/EBP-β,bind |
R13483 | T19019 | T19018 | arg2Of | shown,was |
R13484 | T19019 | T19038 | arg1Of | shown,and |
R13485 | T19022 | T19019 | arg3Of | bind,shown |
R13486 | T19022 | T19020 | arg1Of | bind,to |
R13487 | T19022 | T19021 | arg1Of | bind,specifically |
R13488 | T19022 | T19033 | arg1Of | bind,vitro |
R13489 | T19022 | T19036 | arg1Of | bind,vivo |
R13490 | T19026 | T19022 | arg2Of | element,bind |
R13491 | T19026 | T19023 | arg1Of | element,the |
R13492 | T19026 | T19024 | arg1Of | element,C/EBP |
R13493 | T19026 | T19025 | arg1Of | element,response |
R13494 | T19026 | T19027 | arg1Of | element,in |
R13495 | T19031 | T19027 | arg2Of | promoter,in |
R13496 | T19031 | T19028 | arg1Of | promoter,the |
R13497 | T19031 | T19029 | arg1Of | promoter,SerpinB2 |
R13498 | T19031 | T19030 | arg1Of | promoter,proximal |
R13499 | T19033 | T19032 | arg1Of | vitro,in |
R13500 | T19033 | T19034 | arg1Of | vitro,and |
R13501 | T19036 | T19034 | arg2Of | vivo,and |
R13502 | T19036 | T19035 | arg1Of | vivo,in |
R13503 | T19038 | T19037 | arg1Of | and,"," |
R13504 | T19039 | T19040 | arg1Of | loss,of |
R13505 | T19039 | T19042 | arg1Of | loss,abrogates |
R13506 | T19041 | T19040 | arg2Of | C/EBP-β,of |
R13507 | T19042 | T19038 | arg2Of | abrogates,and |
R13508 | T19046 | T19043 | arg1Of | transcription,constitutive |
R13509 | T19046 | T19044 | arg1Of | transcription,SerpinB2 |
R13510 | T19046 | T19045 | arg1Of | transcription,gene |
R13511 | T19046 | T19047 | arg1Of | transcription,and |
R13512 | T19047 | T19042 | arg2Of | and,abrogates |
R13513 | T19049 | T19047 | arg2Of | response,and |
R13514 | T19049 | T19048 | arg1Of | response,the |
R13515 | T19049 | T19050 | arg1Of | response,to |
R13516 | T19051 | T19050 | arg2Of | LPS,to |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T18726 | 177-185 | Protein | denotes | SerpinB2 |
T18725 | 146-153 | Protein | denotes | C/EBP-β |
T18724 | 85-93 | Protein | denotes | SerpinB2 |
T18723 | 12-19 | Protein | denotes | C/EBP-β |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20246 | 146-153 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
T20245 | 12-19 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
T20213 | 177-185 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
T20212 | 85-93 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T18812 | 213-228 | http://purl.obolibrary.org/obo/GO_0032496 | denotes | response to LPS |
T18798 | 191-204 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T18484 | 0-229 | Sentence | denotes | LPS-induced C/EBP-β was shown to specifically bind the C/EBP response element in the SerpinB2 proximal promoter in vitro and in vivo, and loss of C/EBP-β abrogates constitutive SerpinB2 gene transcription and the response to LPS. |
T249 | 0-229 | Sentence | denotes | LPS-induced C/EBP-β was shown to specifically bind the C/EBP response element in the SerpinB2 proximal promoter in vitro and in vivo, and loss of C/EBP-β abrogates constitutive SerpinB2 gene transcription and the response to LPS. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T18863 | 177-185 | Protein | denotes | SerpinB2 |
T18862 | 146-153 | Protein | denotes | C/EBP-β |
T18861 | 85-93 | Protein | denotes | SerpinB2 |
T18860 | 12-19 | Protein | denotes | C/EBP-β |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20071 | 146-153 | Protein | denotes | C/EBP-β |
T20070 | 85-93 | Protein | denotes | SerpinB2 |
T20069 | 12-19 | Protein | denotes | C/EBP-β |
T20068 | 177-185 | Protein | denotes | SerpinB2 |
T20143 | 154-163 | Negative_regulation | denotes | abrogates |
T20142 | 191-204 | Transcription | denotes | transcription |
T20141 | 138-142 | Negative_regulation | denotes | loss |
T20140 | 46-50 | Binding | denotes | bind |
T20139 | 0-11 | Positive_regulation | denotes | LPS-induced |
R14507 | T20068 | T20142 | themeOf | SerpinB2,transcription |
R14508 | T20069 | T20139 | themeOf | C/EBP-β,LPS-induced |
R14509 | T20069 | T20140 | themeOf | C/EBP-β,bind |
R14510 | T20070 | T20140 | themeOf | SerpinB2,bind |
R14511 | T20071 | T20141 | themeOf | C/EBP-β,loss |
R14577 | T20142 | T20143 | themeOf | transcription,abrogates |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20521 | 146-153 | Protein | denotes | C/EBP-β |
T20520 | 85-93 | Protein | denotes | SerpinB2 |
T20519 | 12-19 | Protein | denotes | C/EBP-β |
T20518 | 177-185 | Protein | denotes | SerpinB2 |
T20591 | 0-11 | Positive_regulation | denotes | LPS-induced |
T20590 | 191-204 | Transcription | denotes | transcription |
T20589 | 138-142 | Negative_regulation | denotes | loss |
T20588 | 46-50 | Binding | denotes | bind |
R14730 | T20518 | T20590 | themeOf | SerpinB2,transcription |
R14731 | T20519 | T20591 | themeOf | C/EBP-β,LPS-induced |
R14732 | T20519 | T20588 | themeOf | C/EBP-β,bind |
R14733 | T20520 | T20588 | themeOf | SerpinB2,bind |
R14734 | T20521 | T20589 | themeOf | C/EBP-β,loss |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20369 | 164-176 | Positive_regulation | denotes | constitutive |
T20368 | 154-163 | Negative_regulation | denotes | abrogates |
T20367 | 191-204 | Transcription | denotes | transcription |
T20366 | 138-142 | Negative_regulation | denotes | loss |
T20365 | 46-50 | Binding | denotes | bind |
T20364 | 0-11 | Positive_regulation | denotes | LPS-induced |
T20295 | 146-153 | Protein | denotes | C/EBP-β |
T20294 | 85-93 | Protein | denotes | SerpinB2 |
T20293 | 12-19 | Protein | denotes | C/EBP-β |
T20292 | 177-185 | Protein | denotes | SerpinB2 |
R14618 | T20292 | T20367 | themeOf | SerpinB2,transcription |
R14619 | T20293 | T20364 | themeOf | C/EBP-β,LPS-induced |
R14620 | T20293 | T20365 | themeOf | C/EBP-β,bind |
R14621 | T20294 | T20365 | themeOf | SerpinB2,bind |
R14622 | T20295 | T20366 | themeOf | C/EBP-β,loss |
R14671 | T20366 | T20368 | causeOf | loss,abrogates |
R14672 | T20367 | T20368 | themeOf | transcription,abrogates |
R14673 | T20367 | T20369 | themeOf | transcription,constitutive |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T21121 | 164-204 | Transcription | denotes | constitutive SerpinB2 gene transcription |
T21097 | 0-19 | Positive_regulation | denotes | LPS-induced C/EBP-β |
T21096 | 0-19 | Gene_expression | denotes | LPS-induced C/EBP-β |
T21070 | 177-185 | Protein | denotes | SerpinB2 |
T21056 | 103-132 | Entity | denotes | promoter in vitro and in vivo |
T21050 | 164-190 | Protein | denotes | constitutive SerpinB2 gene |
T21048 | 143-153 | Protein | denotes | of C/EBP-β |
T21027 | 0-11 | Entity | denotes | LPS-induced |
T20962 | 0-19 | Protein | denotes | LPS-induced C/EBP-β |
T20957 | 81-102 | Protein | denotes | the SerpinB2 proximal |
T20902 | 55-60 | Protein | denotes | C/EBP |
R14946 | T20962 | T21096 | themeOf | LPS-induced C/EBP-β,LPS-induced C/EBP-β |
R14947 | T20962 | T21097 | themeOf | LPS-induced C/EBP-β,LPS-induced C/EBP-β |
R14963 | T21027 | T21097 | causeOf | LPS-induced,LPS-induced C/EBP-β |
R14967 | T21050 | T21121 | themeOf | constitutive SerpinB2 gene,constitutive SerpinB2 gene transcription |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20663 | 138-142 | Negative_regulation | denotes | loss |
T20662 | 46-50 | Binding | denotes | bind |
T20661 | 46-50 | Binding | denotes | bind |
T20660 | 0-11 | Positive_regulation | denotes | LPS-induced |
T20659 | 146-153 | Protein | denotes | C/EBP-β |
T20658 | 85-111 | Protein | denotes | SerpinB2 proximal promoter |
T20657 | 55-77 | Protein | denotes | C/EBP response element |
T20656 | 12-19 | Protein | denotes | C/EBP-β |
R14811 | T20656 | T20660 | themeOf | C/EBP-β,LPS-induced |
R14812 | T20656 | T20661 | themeOf | C/EBP-β,bind |
R14813 | T20656 | T20662 | themeOf | C/EBP-β,bind |
R14814 | T20657 | T20661 | themeOf | C/EBP response element,bind |
R14815 | T20658 | T20662 | themeOf | SerpinB2 proximal promoter,bind |
R14816 | T20659 | T20663 | themeOf | C/EBP-β,loss |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T18240 | 138-142 | Negative_regulation | denotes | loss |
T18239 | 46-50 | Binding | denotes | bind |
T18238 | 4-11 | Positive_regulation | denotes | induced |
T18174 | 177-185 | Protein | denotes | SerpinB2 |
T18173 | 146-153 | Protein | denotes | C/EBP-β |
T18172 | 85-93 | Protein | denotes | SerpinB2 |
T18171 | 12-19 | Protein | denotes | C/EBP-β |
R13109 | T18171 | T18238 | themeOf | C/EBP-β,induced |
R13110 | T18171 | T18239 | themeOf | C/EBP-β,bind |
R13111 | T18173 | T18240 | themeOf | C/EBP-β,loss |
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T18370 | 191-204 | Transcription | denotes | transcription |
T18369 | 177-185 | Protein | denotes | SerpinB2 |
T18368 | 154-163 | Positive_regulation | denotes | abrogates |
T18367 | 146-153 | Protein | denotes | C/EBP-β |
T18366 | 138-142 | Negative_regulation | denotes | loss |
T18365 | 85-93 | Protein | denotes | SerpinB2 |
T18364 | 46-50 | Binding | denotes | bind |
T18363 | 12-19 | Protein | denotes | C/EBP-β |
T18362 | 4-11 | Positive_regulation | denotes | induced |
T18291 | 177-185 | Protein | denotes | SerpinB2 |
T18290 | 146-153 | Protein | denotes | C/EBP-β |
T18289 | 85-93 | Protein | denotes | SerpinB2 |
T18288 | 12-19 | Protein | denotes | C/EBP-β |
R13162 | T18363 | T18362 | themeOf | C/EBP-β,induced |
R13163 | T18363 | T18364 | themeOf | C/EBP-β,bind |
R13164 | T18367 | T18366 | themeOf | C/EBP-β,loss |
R13165 | T18367 | T18368 | causeOf | C/EBP-β,abrogates |
R13166 | T18369 | T18370 | themeOf | SerpinB2,transcription |
R13167 | T18370 | T18368 | themeOf | transcription,abrogates |