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PMC:3589482 / 40608-41443 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21261 834-835 . denotes .
T21260 831-834 NNP denotes LPS
T21259 828-830 TO denotes to
T21258 819-827 NN denotes response
T21257 815-818 DT denotes the
T21256 811-814 CC denotes and
T21255 797-810 NN denotes transcription
T21254 792-796 NN denotes gene
T21253 783-791 NNP denotes SerpinB2
T21252 770-782 JJ denotes constitutive
T21251 760-769 VBZ denotes abrogates
T21250 758-759 NN denotes β
T21249 757-758 : denotes -
T21248 752-757 NNP denotes C/EBP
T21247 749-751 IN denotes of
T21246 744-748 NN denotes loss
T21245 740-743 CC denotes and
T21244 738-739 , denotes ,
T21243 734-738 NN denotes vivo
T21242 731-733 IN denotes in
T21241 727-730 CC denotes and
T21240 721-726 NN denotes vitro
T21239 718-720 IN denotes in
T21238 709-717 NN denotes promoter
T21237 700-708 JJ denotes proximal
T21236 691-699 NNP denotes SerpinB2
T21235 687-690 DT denotes the
T21234 684-686 IN denotes in
T21233 676-683 NN denotes element
T21232 667-675 NN denotes response
T21231 661-666 NNP denotes C/EBP
T21230 657-660 DT denotes the
T21229 652-656 NN denotes bind
T21228 639-651 RB denotes specifically
T21227 636-638 TO denotes to
T21226 630-635 VBN denotes shown
T21225 626-629 VBD denotes was
T21170 323-331 CD denotes SerpinB2
T21169 321-322 . denotes .
T21168 313-321 NNP denotes SerpinB2
T21167 306-312 NN denotes factor
T21166 293-305 JJ denotes pro-survival
T21165 289-292 DT denotes the
T21164 286-288 IN denotes of
T21163 276-285 NN denotes induction
T21162 268-275 JJ denotes massive
T21161 259-267 VBZ denotes involves
T21160 253-258 WDT denotes which
T21159 244-252 NN denotes response
T21158 228-243 JJ denotes anti-pathogenic
T21157 225-227 DT denotes an
T21156 219-224 VB denotes mount
T21155 216-218 TO denotes to
T21154 204-215 NNS denotes macrophages
T21153 194-203 VBP denotes stimulate
T21152 192-193 , denotes ,
T21151 189-192 NNP denotes LPS
T21150 179-188 NN denotes endotoxin
T21149 169-178 JJ denotes bacterial
T21148 165-168 DT denotes the
T21147 162-164 IN denotes as
T21146 157-161 JJ denotes such
T21145 155-156 , denotes ,
T21144 148-155 NNS denotes stimuli
T21143 131-147 JJ denotes Pro-inflammatory
T21142 129-130 . denotes .
T21141 120-129 NNS denotes pathogens
T21140 112-119 IN denotes against
T21139 104-111 NN denotes defense
T21138 101-103 IN denotes of
T21137 96-100 NN denotes line
T21136 90-95 JJ denotes first
T21135 86-89 DT denotes the
T21134 78-85 VB denotes provide
T21133 65-77 RB denotes consequently
T21132 61-64 CC denotes and
T21131 59-60 , denotes ,
T21130 51-59 NN denotes response
T21129 44-50 JJ denotes immune
T21128 37-43 NN denotes innate
T21127 33-36 DT denotes the
T21126 30-32 IN denotes of
T21125 20-29 NNS denotes mediators
T21124 16-19 JJ denotes key
T21123 12-15 VBP denotes are
T21122 0-11 NNS denotes Macrophages
T21224 624-625 NN denotes β
T21223 623-624 : denotes -
T21222 618-623 NNP denotes C/EBP
T21221 606-617 JJ denotes LPS-induced
T21220 604-605 . denotes .
T21219 603-604 NN denotes β
T21218 602-603 : denotes -
T21217 597-602 NNP denotes C/EBP
T21216 592-596 IN denotes upon
T21215 582-591 JJ denotes dependent
T21214 574-581 RB denotes greatly
T21213 571-573 VBZ denotes is
T21212 567-570 CC denotes and
T21211 558-566 NN denotes promoter
T21210 549-557 JJ denotes proximal
T21209 540-548 NNP denotes SerpinB2
T21208 536-539 DT denotes the
T21207 533-535 IN denotes by
T21206 523-532 VBN denotes conferred
T21205 520-522 VBZ denotes is
T21204 516-519 NNP denotes LPS
T21203 513-515 TO denotes to
T21202 504-512 NN denotes response
T21201 501-503 IN denotes in
T21200 487-500 NN denotes transcription
T21199 482-486 NN denotes gene
T21198 473-481 CD denotes SerpinB2
T21197 468-472 IN denotes that
T21196 461-467 VBP denotes report
T21195 458-460 PRP denotes we
T21194 453-457 RB denotes Here
T21193 451-452 . denotes .
T21192 450-451 NNP denotes ]
T21191 448-450 CD denotes 16
T21190 447-448 NNP denotes [
T21189 443-446 NNP denotes LPS
T21188 440-442 TO denotes to
T21187 431-439 NN denotes response
T21186 428-430 IN denotes in
T21185 420-427 NNS denotes modules
T21184 410-419 VBG denotes signaling
T21183 402-409 NNP denotes p38MAPK
T21182 398-401 CC denotes and
T21181 392-397 NNP denotes NF-κB
T21180 391-392 NNP denotes /
T21179 387-391 NNP denotes IKKβ
T21178 383-386 DT denotes the
T21177 375-382 IN denotes between
T21176 370-374 NN denotes talk
T21175 364-369 NN denotes cross
T21174 361-363 IN denotes by
T21173 353-360 VBN denotes induced
T21172 335-352 RB denotes transcriptionally
T21171 332-334 VBZ denotes is
R14983 T21122 T21123 nsubj Macrophages,are
R14984 T21123 T21123 ROOT are,are
R14985 T21124 T21125 amod key,mediators
R14986 T21125 T21123 attr mediators,are
R14987 T21126 T21125 prep of,mediators
R14988 T21127 T21130 det the,response
R14989 T21128 T21130 amod innate,response
R14990 T21129 T21130 amod immune,response
R14991 T21130 T21126 pobj response,of
R14992 T21131 T21123 punct ",",are
R14993 T21132 T21123 cc and,are
R14994 T21133 T21134 advmod consequently,provide
R14995 T21134 T21123 conj provide,are
R14996 T21135 T21137 det the,line
R14997 T21136 T21137 amod first,line
R14998 T21137 T21134 dobj line,provide
R14999 T21138 T21137 prep of,line
R15000 T21139 T21138 pobj defense,of
R15001 T21140 T21137 prep against,line
R15002 T21141 T21140 pobj pathogens,against
R15003 T21142 T21123 punct .,are
R15004 T21143 T21144 amod Pro-inflammatory,stimuli
R15005 T21144 T21153 nsubj stimuli,stimulate
R15006 T21145 T21144 punct ",",stimuli
R15007 T21146 T21147 amod such,as
R15008 T21147 T21144 prep as,stimuli
R15009 T21148 T21151 det the,LPS
R15010 T21149 T21151 amod bacterial,LPS
R15011 T21150 T21151 compound endotoxin,LPS
R15012 T21151 T21147 pobj LPS,as
R15013 T21152 T21144 punct ",",stimuli
R15014 T21153 T21153 ROOT stimulate,stimulate
R15015 T21154 T21153 dobj macrophages,stimulate
R15016 T21155 T21156 aux to,mount
R15017 T21156 T21153 advcl mount,stimulate
R15018 T21157 T21159 det an,response
R15019 T21158 T21159 amod anti-pathogenic,response
R15020 T21159 T21156 dobj response,mount
R15021 T21160 T21161 nsubj which,involves
R15022 T21161 T21159 relcl involves,response
R15023 T21162 T21163 amod massive,induction
R15024 T21163 T21161 dobj induction,involves
R15025 T21164 T21163 prep of,induction
R15026 T21165 T21167 det the,factor
R15027 T21166 T21167 amod pro-survival,factor
R15028 T21167 T21164 pobj factor,of
R15029 T21168 T21163 conj SerpinB2,induction
R15030 T21169 T21153 punct .,stimulate
R15031 T21170 T21173 nsubjpass SerpinB2,induced
R15032 T21171 T21173 auxpass is,induced
R15033 T21172 T21173 advmod transcriptionally,induced
R15034 T21173 T21173 ROOT induced,induced
R15035 T21174 T21173 agent by,induced
R15036 T21175 T21176 compound cross,talk
R15037 T21176 T21174 pobj talk,by
R15038 T21177 T21176 prep between,talk
R15039 T21178 T21181 det the,NF-κB
R15040 T21179 T21181 compound IKKβ,NF-κB
R15041 T21180 T21181 compound /,NF-κB
R15042 T21181 T21177 pobj NF-κB,between
R15043 T21182 T21181 cc and,NF-κB
R15044 T21183 T21181 conj p38MAPK,NF-κB
R15045 T21184 T21176 acl signaling,talk
R15046 T21185 T21184 dobj modules,signaling
R15047 T21186 T21184 prep in,signaling
R15048 T21187 T21186 pobj response,in
R15049 T21188 T21187 prep to,response
R15050 T21189 T21188 pobj LPS,to
R15051 T21190 T21192 nmod [,]
R15052 T21191 T21192 nummod 16,]
R15053 T21192 T21189 appos ],LPS
R15054 T21193 T21173 punct .,induced
R15055 T21194 T21196 advmod Here,report
R15056 T21195 T21196 nsubj we,report
R15057 T21196 T21196 ROOT report,report
R15058 T21197 T21206 mark that,conferred
R15059 T21198 T21200 nummod SerpinB2,transcription
R15060 T21199 T21200 compound gene,transcription
R15061 T21200 T21206 nsubjpass transcription,conferred
R15062 T21201 T21200 prep in,transcription
R15063 T21202 T21201 pobj response,in
R15064 T21203 T21202 prep to,response
R15065 T21204 T21203 pobj LPS,to
R15066 T21205 T21206 auxpass is,conferred
R15067 T21206 T21196 ccomp conferred,report
R15068 T21207 T21206 agent by,conferred
R15069 T21208 T21211 det the,promoter
R15070 T21209 T21211 nmod SerpinB2,promoter
R15071 T21210 T21211 amod proximal,promoter
R15072 T21211 T21207 pobj promoter,by
R15073 T21212 T21206 cc and,conferred
R15074 T21213 T21206 conj is,conferred
R15075 T21214 T21215 advmod greatly,dependent
R15076 T21215 T21213 acomp dependent,is
R15077 T21216 T21215 prep upon,dependent
R15078 T21217 T21216 pobj C/EBP,upon
R15079 T21218 T21219 punct -,β
R15080 T21219 T21213 npadvmod β,is
R15081 T21220 T21196 punct .,report
R15082 T21221 T21224 amod LPS-induced,β
R15083 T21222 T21224 compound C/EBP,β
R15084 T21223 T21224 punct -,β
R15085 T21224 T21226 nsubjpass β,shown
R15086 T21225 T21226 auxpass was,shown
R15087 T21226 T21226 ROOT shown,shown
R15088 T21227 T21229 aux to,bind
R15089 T21228 T21229 advmod specifically,bind
R15090 T21229 T21226 xcomp bind,shown
R15091 T21230 T21233 det the,element
R15092 T21231 T21233 compound C/EBP,element
R15093 T21232 T21233 compound response,element
R15094 T21233 T21229 dobj element,bind
R15095 T21234 T21233 prep in,element
R15096 T21235 T21238 det the,promoter
R15097 T21236 T21238 nmod SerpinB2,promoter
R15098 T21237 T21238 amod proximal,promoter
R15099 T21238 T21234 pobj promoter,in
R15100 T21239 T21233 prep in,element
R15101 T21240 T21239 pobj vitro,in
R15102 T21241 T21239 cc and,in
R15103 T21242 T21239 conj in,in
R15104 T21243 T21242 pobj vivo,in
R15105 T21244 T21242 punct ",",in
R15106 T21245 T21242 cc and,in
R15107 T21246 T21242 conj loss,in
R15108 T21247 T21246 prep of,loss
R15109 T21248 T21250 compound C/EBP,β
R15110 T21249 T21250 punct -,β
R15111 T21250 T21251 compound β,abrogates
R15112 T21251 T21229 dobj abrogates,bind
R15113 T21252 T21255 amod constitutive,transcription
R15114 T21253 T21255 compound SerpinB2,transcription
R15115 T21254 T21255 compound gene,transcription
R15116 T21255 T21251 dobj transcription,abrogates
R15117 T21256 T21255 cc and,transcription
R15118 T21257 T21258 det the,response
R15119 T21258 T21255 conj response,transcription
R15120 T21259 T21258 prep to,response
R15121 T21260 T21259 pobj LPS,to
R15122 T21261 T21226 punct .,shown

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19051 831-834 NN denotes LPS
T19050 828-830 TO denotes to
T19049 819-827 NN denotes response
T19048 815-818 DT denotes the
T19047 811-814 CC denotes and
T19046 797-810 NN denotes transcription
T19045 792-796 NN denotes gene
T19044 783-791 NN denotes SerpinB2
T19043 770-782 JJ denotes constitutive
T19042 760-769 VB denotes abrogates
T19041 752-759 NN denotes C/EBP-β
T19040 749-751 IN denotes of
T19039 744-748 NN denotes loss
T19038 740-743 CC denotes and
T19037 738-739 -COMMA- denotes ,
T19036 734-738 FW denotes vivo
T19035 731-733 FW denotes in
T19034 727-730 CC denotes and
T19033 721-726 FW denotes vitro
T19032 718-720 FW denotes in
T19031 709-717 NN denotes promoter
T19030 700-708 JJ denotes proximal
T19029 691-699 NN denotes SerpinB2
T19028 687-690 DT denotes the
T19027 684-686 IN denotes in
T19026 676-683 NN denotes element
T19025 667-675 NN denotes response
T19024 661-666 NN denotes C/EBP
T19023 657-660 DT denotes the
T19022 652-656 VB denotes bind
T19021 639-651 RB denotes specifically
T19020 636-638 TO denotes to
T19019 630-635 VB denotes shown
T19018 626-629 VB denotes was
T19017 618-625 NN denotes C/EBP-β
T19016 606-617 JJ denotes LPS-induced
T19015 597-604 NN denotes C/EBP-β
T19014 592-596 IN denotes upon
T19013 582-591 JJ denotes dependent
T19012 574-581 RB denotes greatly
T19011 571-573 VB denotes is
T19010 567-570 CC denotes and
T19009 558-566 NN denotes promoter
T19008 549-557 JJ denotes proximal
T19007 540-548 NN denotes SerpinB2
T19006 536-539 DT denotes the
T19005 533-535 IN denotes by
T19004 523-532 VB denotes conferred
T19003 520-522 VB denotes is
T19002 516-519 NN denotes LPS
T19001 513-515 TO denotes to
T19000 504-512 NN denotes response
T18999 501-503 IN denotes in
T18998 487-500 NN denotes transcription
T18997 482-486 NN denotes gene
T18996 473-481 NN denotes SerpinB2
T18995 468-472 IN denotes that
T18994 461-467 VB denotes report
T18993 458-460 PRP denotes we
T18992 453-457 RB denotes Here
T18991 450-451 -RRB- denotes ]
T18990 448-450 CD denotes 16
T18989 447-448 -LRB- denotes [
T18988 443-446 NN denotes LPS
T18987 440-442 TO denotes to
T18986 431-439 NN denotes response
T18985 428-430 IN denotes in
T18984 420-427 NN denotes modules
T18983 410-419 NN denotes signaling
T18982 402-409 NN denotes p38MAPK
T18981 398-401 CC denotes and
T18980 387-397 NN denotes IKKβ/NF-κB
T18979 383-386 DT denotes the
T18978 375-382 IN denotes between
T18977 370-374 NN denotes talk
T18976 364-369 NN denotes cross
T18975 361-363 IN denotes by
T18974 353-360 VB denotes induced
T18973 335-352 RB denotes transcriptionally
T18972 332-334 VB denotes is
T18971 323-331 NN denotes SerpinB2
T18970 313-321 NN denotes SerpinB2
T18969 306-312 NN denotes factor
T18968 293-305 JJ denotes pro-survival
T18967 289-292 DT denotes the
T18966 286-288 IN denotes of
T18965 276-285 NN denotes induction
T18964 268-275 JJ denotes massive
T18963 259-267 VB denotes involves
T18962 253-258 WDT denotes which
T18961 244-252 NN denotes response
T18960 228-243 JJ denotes anti-pathogenic
T18959 225-227 DT denotes an
T18958 219-224 VB denotes mount
T18957 216-218 TO denotes to
T18956 204-215 NN denotes macrophages
T18955 194-203 VB denotes stimulate
T18954 192-193 -COMMA- denotes ,
T18953 189-192 NN denotes LPS
T18952 179-188 NN denotes endotoxin
T18951 169-178 JJ denotes bacterial
T18950 165-168 DT denotes the
T18949 162-164 IN denotes as
T18948 157-161 JJ denotes such
T18947 155-156 -COMMA- denotes ,
T18946 148-155 NN denotes stimuli
T18945 131-147 JJ denotes Pro-inflammatory
T18944 120-129 NN denotes pathogens
T18943 112-119 IN denotes against
T18942 104-111 NN denotes defense
T18941 101-103 IN denotes of
T18940 96-100 NN denotes line
T18939 90-95 JJ denotes first
T18938 86-89 DT denotes the
T18937 78-85 VB denotes provide
T18936 65-77 RB denotes consequently
T18935 61-64 CC denotes and
T18934 59-60 -COMMA- denotes ,
T18933 51-59 NN denotes response
T18932 44-50 JJ denotes immune
T18931 37-43 JJ denotes innate
T18930 33-36 DT denotes the
T18929 30-32 IN denotes of
T18928 20-29 NN denotes mediators
T18927 16-19 JJ denotes key
T18926 12-15 VB denotes are
T18925 0-11 NN denotes Macrophages
R13385 T18925 T18926 arg1Of Macrophages,are
R13386 T18925 T18937 arg1Of Macrophages,provide
R13387 T18926 T18935 arg1Of are,and
R13388 T18928 T18926 arg2Of mediators,are
R13389 T18928 T18927 arg1Of mediators,key
R13390 T18928 T18929 arg1Of mediators,of
R13391 T18933 T18929 arg2Of response,of
R13392 T18933 T18930 arg1Of response,the
R13393 T18933 T18931 arg1Of response,innate
R13394 T18933 T18932 arg1Of response,immune
R13395 T18935 T18934 arg1Of and,","
R13396 T18937 T18935 arg2Of provide,and
R13397 T18937 T18936 arg1Of provide,consequently
R13398 T18940 T18937 arg2Of line,provide
R13399 T18940 T18938 arg1Of line,the
R13400 T18940 T18939 arg1Of line,first
R13401 T18940 T18941 arg1Of line,of
R13402 T18942 T18941 arg2Of defense,of
R13403 T18942 T18943 arg1Of defense,against
R13404 T18944 T18943 arg2Of pathogens,against
R13405 T18946 T18945 arg1Of stimuli,Pro-inflammatory
R13406 T18946 T18947 arg1Of stimuli,","
R13407 T18946 T18949 arg1Of stimuli,as
R13408 T18946 T18955 arg1Of stimuli,stimulate
R13409 T18949 T18948 arg1Of as,such
R13410 T18953 T18949 arg2Of LPS,as
R13411 T18953 T18950 arg1Of LPS,the
R13412 T18953 T18951 arg1Of LPS,bacterial
R13413 T18953 T18952 arg1Of LPS,endotoxin
R13414 T18955 T18954 arg1Of stimulate,","
R13415 T18956 T18955 arg2Of macrophages,stimulate
R13416 T18956 T18958 arg1Of macrophages,mount
R13417 T18958 T18955 arg3Of mount,stimulate
R13418 T18958 T18957 arg1Of mount,to
R13419 T18961 T18958 arg2Of response,mount
R13420 T18961 T18959 arg1Of response,an
R13421 T18961 T18960 arg1Of response,anti-pathogenic
R13422 T18961 T18962 arg1Of response,which
R13423 T18961 T18963 arg1Of response,involves
R13424 T18965 T18963 arg2Of induction,involves
R13425 T18965 T18964 arg1Of induction,massive
R13426 T18965 T18966 arg1Of induction,of
R13427 T18970 T18966 arg2Of SerpinB2,of
R13428 T18970 T18967 arg1Of SerpinB2,the
R13429 T18970 T18968 arg1Of SerpinB2,pro-survival
R13430 T18970 T18969 arg1Of SerpinB2,factor
R13431 T18971 T18972 arg1Of SerpinB2,is
R13432 T18971 T18974 arg2Of SerpinB2,induced
R13433 T18974 T18972 arg2Of induced,is
R13434 T18974 T18973 arg1Of induced,transcriptionally
R13435 T18977 T18974 arg1Of talk,induced
R13436 T18977 T18975 arg2Of talk,by
R13437 T18977 T18976 arg1Of talk,cross
R13438 T18977 T18978 arg1Of talk,between
R13439 T18980 T18981 arg1Of IKKβ/NF-κB,and
R13440 T18982 T18981 arg2Of p38MAPK,and
R13441 T18984 T18978 arg2Of modules,between
R13442 T18984 T18979 arg1Of modules,the
R13443 T18984 T18980 arg1Of modules,IKKβ/NF-κB
R13444 T18984 T18982 arg1Of modules,p38MAPK
R13445 T18984 T18983 arg1Of modules,signaling
R13446 T18984 T18985 arg1Of modules,in
R13447 T18986 T18985 arg2Of response,in
R13448 T18986 T18987 arg1Of response,to
R13449 T18988 T18987 arg2Of LPS,to
R13450 T18988 T18989 arg1Of LPS,[
R13451 T18990 T18989 arg2Of 16,[
R13452 T18991 T18989 arg3Of ],[
R13453 T18993 T18994 arg1Of we,report
R13454 T18994 T18992 arg1Of report,Here
R13455 T18998 T18996 arg1Of transcription,SerpinB2
R13456 T18998 T18997 arg1Of transcription,gene
R13457 T18998 T18999 arg1Of transcription,in
R13458 T18998 T19003 arg1Of transcription,is
R13459 T18998 T19004 arg2Of transcription,conferred
R13460 T18998 T19011 arg1Of transcription,is
R13461 T18998 T19013 arg1Of transcription,dependent
R13462 T19000 T18999 arg2Of response,in
R13463 T19000 T19001 arg1Of response,to
R13464 T19002 T19001 arg2Of LPS,to
R13465 T19004 T19003 arg2Of conferred,is
R13466 T19004 T19010 arg1Of conferred,and
R13467 T19009 T19004 arg1Of promoter,conferred
R13468 T19009 T19005 arg2Of promoter,by
R13469 T19009 T19006 arg1Of promoter,the
R13470 T19009 T19007 arg1Of promoter,SerpinB2
R13471 T19009 T19008 arg1Of promoter,proximal
R13472 T19010 T18994 arg2Of and,report
R13473 T19010 T18995 arg1Of and,that
R13474 T19011 T19010 arg2Of is,and
R13475 T19013 T19011 arg2Of dependent,is
R13476 T19013 T19012 arg1Of dependent,greatly
R13477 T19013 T19014 arg1Of dependent,upon
R13478 T19015 T19014 arg2Of C/EBP-β,upon
R13479 T19017 T19016 arg1Of C/EBP-β,LPS-induced
R13480 T19017 T19018 arg1Of C/EBP-β,was
R13481 T19017 T19019 arg2Of C/EBP-β,shown
R13482 T19017 T19022 arg1Of C/EBP-β,bind
R13483 T19019 T19018 arg2Of shown,was
R13484 T19019 T19038 arg1Of shown,and
R13485 T19022 T19019 arg3Of bind,shown
R13486 T19022 T19020 arg1Of bind,to
R13487 T19022 T19021 arg1Of bind,specifically
R13488 T19022 T19033 arg1Of bind,vitro
R13489 T19022 T19036 arg1Of bind,vivo
R13490 T19026 T19022 arg2Of element,bind
R13491 T19026 T19023 arg1Of element,the
R13492 T19026 T19024 arg1Of element,C/EBP
R13493 T19026 T19025 arg1Of element,response
R13494 T19026 T19027 arg1Of element,in
R13495 T19031 T19027 arg2Of promoter,in
R13496 T19031 T19028 arg1Of promoter,the
R13497 T19031 T19029 arg1Of promoter,SerpinB2
R13498 T19031 T19030 arg1Of promoter,proximal
R13499 T19033 T19032 arg1Of vitro,in
R13500 T19033 T19034 arg1Of vitro,and
R13501 T19036 T19034 arg2Of vivo,and
R13502 T19036 T19035 arg1Of vivo,in
R13503 T19038 T19037 arg1Of and,","
R13504 T19039 T19040 arg1Of loss,of
R13505 T19039 T19042 arg1Of loss,abrogates
R13506 T19041 T19040 arg2Of C/EBP-β,of
R13507 T19042 T19038 arg2Of abrogates,and
R13508 T19046 T19043 arg1Of transcription,constitutive
R13509 T19046 T19044 arg1Of transcription,SerpinB2
R13510 T19046 T19045 arg1Of transcription,gene
R13511 T19046 T19047 arg1Of transcription,and
R13512 T19047 T19042 arg2Of and,abrogates
R13513 T19049 T19047 arg2Of response,and
R13514 T19049 T19048 arg1Of response,the
R13515 T19049 T19050 arg1Of response,to
R13516 T19051 T19050 arg2Of LPS,to

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18726 783-791 Protein denotes SerpinB2
T18725 752-759 Protein denotes C/EBP-β
T18724 691-699 Protein denotes SerpinB2
T18723 618-625 Protein denotes C/EBP-β
T18722 597-604 Protein denotes C/EBP-β
T18721 540-548 Protein denotes SerpinB2
T18720 473-481 Protein denotes SerpinB2
T18719 387-391 Protein denotes IKKβ
T18718 323-331 Protein denotes SerpinB2
T18717 313-321 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20246 752-759 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T20245 618-625 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T20244 597-604 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T20243 387-391 http://www.uniprot.org/uniprot/O14920 denotes IKKβ
T20213 783-791 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20212 691-699 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20211 540-548 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20210 473-481 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20209 323-331 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20208 313-321 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T18812 819-834 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS
T18811 504-519 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS
T18810 431-446 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS
T18807 410-419 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T18798 797-810 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T18797 487-500 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T18796 335-352 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptionally
T18795 293-305 http://purl.obolibrary.org/obo/GO_0043066 denotes pro-survival
T18794 44-59 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T18793 37-59 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune response
T18792 37-59 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune response
T18791 37-59 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune response
T18790 37-59 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune response
T18789 37-59 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune response
T18788 37-59 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response

sentences

Id Subject Object Predicate Lexical cue
T18484 606-835 Sentence denotes LPS-induced C/EBP-β was shown to specifically bind the C/EBP response element in the SerpinB2 proximal promoter in vitro and in vivo, and loss of C/EBP-β abrogates constitutive SerpinB2 gene transcription and the response to LPS.
T18483 453-605 Sentence denotes Here we report that SerpinB2 gene transcription in response to LPS is conferred by the SerpinB2 proximal promoter and is greatly dependent upon C/EBP-β.
T18482 323-452 Sentence denotes SerpinB2 is transcriptionally induced by cross talk between the IKKβ/NF-κB and p38MAPK signaling modules in response to LPS [16].
T18481 131-322 Sentence denotes Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2.
T18480 0-130 Sentence denotes Macrophages are key mediators of the innate immune response, and consequently provide the first line of defense against pathogens.
T245 0-130 Sentence denotes Macrophages are key mediators of the innate immune response, and consequently provide the first line of defense against pathogens.
T246 131-322 Sentence denotes Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2.
T247 323-452 Sentence denotes SerpinB2 is transcriptionally induced by cross talk between the IKKβ/NF-κB and p38MAPK signaling modules in response to LPS [16].
T248 453-605 Sentence denotes Here we report that SerpinB2 gene transcription in response to LPS is conferred by the SerpinB2 proximal promoter and is greatly dependent upon C/EBP-β.
T249 606-835 Sentence denotes LPS-induced C/EBP-β was shown to specifically bind the C/EBP response element in the SerpinB2 proximal promoter in vitro and in vivo, and loss of C/EBP-β abrogates constitutive SerpinB2 gene transcription and the response to LPS.

simple1

Id Subject Object Predicate Lexical cue
T18863 783-791 Protein denotes SerpinB2
T18862 752-759 Protein denotes C/EBP-β
T18861 691-699 Protein denotes SerpinB2
T18860 618-625 Protein denotes C/EBP-β
T18859 597-604 Protein denotes C/EBP-β
T18858 540-548 Protein denotes SerpinB2
T18857 473-481 Protein denotes SerpinB2
T18856 387-391 Protein denotes IKKβ
T18855 323-331 Protein denotes SerpinB2
T18854 313-321 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20071 752-759 Protein denotes C/EBP-β
T20070 691-699 Protein denotes SerpinB2
T20069 618-625 Protein denotes C/EBP-β
T20068 783-791 Protein denotes SerpinB2
T20067 597-604 Protein denotes C/EBP-β
T20066 540-548 Protein denotes SerpinB2
T20065 473-481 Protein denotes SerpinB2
T20064 387-391 Protein denotes IKKβ
T20063 323-331 Protein denotes SerpinB2
T20062 313-321 Protein denotes SerpinB2
T20143 760-769 Negative_regulation denotes abrogates
T20142 797-810 Transcription denotes transcription
T20141 744-748 Negative_regulation denotes loss
T20140 652-656 Binding denotes bind
T20139 606-617 Positive_regulation denotes LPS-induced
T20138 487-500 Transcription denotes transcription
T20137 582-591 Positive_regulation denotes dependent
T20136 504-512 Positive_regulation denotes response
T20135 523-532 Positive_regulation denotes conferred
T20134 353-360 Positive_regulation denotes induced
T20133 276-285 Positive_regulation denotes induction
R14504 T20062 T20133 themeOf SerpinB2,induction
R14505 T20063 T20134 themeOf SerpinB2,induced
R14506 T20065 T20138 themeOf SerpinB2,transcription
R14507 T20068 T20142 themeOf SerpinB2,transcription
R14508 T20069 T20139 themeOf C/EBP-β,LPS-induced
R14509 T20069 T20140 themeOf C/EBP-β,bind
R14510 T20070 T20140 themeOf SerpinB2,bind
R14511 T20071 T20141 themeOf C/EBP-β,loss
R14574 T20138 T20136 themeOf transcription,response
R14575 T20138 T20135 themeOf transcription,conferred
R14576 T20138 T20137 themeOf transcription,dependent
R14577 T20142 T20143 themeOf transcription,abrogates

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20521 752-759 Protein denotes C/EBP-β
T20520 691-699 Protein denotes SerpinB2
T20519 618-625 Protein denotes C/EBP-β
T20587 487-500 Transcription denotes transcription
T20586 582-591 Positive_regulation denotes dependent
T20585 353-360 Positive_regulation denotes induced
T20584 259-267 Positive_regulation denotes involves
T20583 276-285 Positive_regulation denotes induction
T20518 783-791 Protein denotes SerpinB2
T20517 597-604 Protein denotes C/EBP-β
T20516 540-548 Protein denotes SerpinB2
T20515 473-481 Protein denotes SerpinB2
T20514 387-391 Protein denotes IKKβ
T20513 323-331 Protein denotes SerpinB2
T20512 313-321 Protein denotes SerpinB2
T20591 606-617 Positive_regulation denotes LPS-induced
T20590 797-810 Transcription denotes transcription
T20589 744-748 Negative_regulation denotes loss
T20588 652-656 Binding denotes bind
R14726 T20512 T20583 themeOf SerpinB2,induction
R14727 T20513 T20585 themeOf SerpinB2,induced
R14729 T20517 T20586 causeOf C/EBP-β,dependent
R14780 T20583 T20584 themeOf induction,involves
R14781 T20587 T20586 themeOf transcription,dependent
R14728 T20515 T20587 themeOf SerpinB2,transcription
R14730 T20518 T20590 themeOf SerpinB2,transcription
R14731 T20519 T20591 themeOf C/EBP-β,LPS-induced
R14732 T20519 T20588 themeOf C/EBP-β,bind
R14733 T20520 T20588 themeOf SerpinB2,bind
R14734 T20521 T20589 themeOf C/EBP-β,loss

DLUT931

Id Subject Object Predicate Lexical cue
T20369 770-782 Positive_regulation denotes constitutive
T20368 760-769 Negative_regulation denotes abrogates
T20367 797-810 Transcription denotes transcription
T20366 744-748 Negative_regulation denotes loss
T20365 652-656 Binding denotes bind
T20364 606-617 Positive_regulation denotes LPS-induced
T20363 582-591 Positive_regulation denotes dependent
T20362 523-532 Positive_regulation denotes conferred
T20361 487-500 Transcription denotes transcription
T20360 353-360 Positive_regulation denotes induced
T20359 268-275 Positive_regulation denotes massive
T20358 259-267 Positive_regulation denotes involves
T20357 276-285 Positive_regulation denotes induction
T20295 752-759 Protein denotes C/EBP-β
T20294 691-699 Protein denotes SerpinB2
T20293 618-625 Protein denotes C/EBP-β
T20292 783-791 Protein denotes SerpinB2
T20291 597-604 Protein denotes C/EBP-β
T20290 540-548 Protein denotes SerpinB2
T20289 473-481 Protein denotes SerpinB2
T20288 387-391 Protein denotes IKKβ
T20287 323-331 Protein denotes SerpinB2
T20286 313-321 Protein denotes SerpinB2
R14618 T20292 T20367 themeOf SerpinB2,transcription
R14619 T20293 T20364 themeOf C/EBP-β,LPS-induced
R14620 T20293 T20365 themeOf C/EBP-β,bind
R14621 T20294 T20365 themeOf SerpinB2,bind
R14622 T20295 T20366 themeOf C/EBP-β,loss
R14667 T20357 T20358 themeOf induction,involves
R14668 T20357 T20359 themeOf induction,massive
R14669 T20361 T20362 themeOf transcription,conferred
R14670 T20361 T20363 themeOf transcription,dependent
R14671 T20366 T20368 causeOf loss,abrogates
R14672 T20367 T20368 themeOf transcription,abrogates
R14673 T20367 T20369 themeOf transcription,constitutive
R14614 T20286 T20357 themeOf SerpinB2,induction
R14615 T20287 T20360 themeOf SerpinB2,induced
R14616 T20289 T20361 themeOf SerpinB2,transcription
R14617 T20291 T20363 causeOf C/EBP-β,dependent

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21121 770-810 Transcription denotes constitutive SerpinB2 gene transcription
T21114 268-321 Positive_regulation denotes massive induction of the pro-survival factor SerpinB2
T21113 268-321 Gene_expression denotes massive induction of the pro-survival factor SerpinB2
T21097 606-625 Positive_regulation denotes LPS-induced C/EBP-β
T21096 606-625 Gene_expression denotes LPS-induced C/EBP-β
T21091 482-500 Transcription denotes gene transcription
T21080 443-451 Entity denotes LPS [16]
T21078 204-215 Entity denotes macrophages
T21070 783-791 Protein denotes SerpinB2
T21065 392-397 Protein denotes NF-κB
T21061 387-397 Protein denotes IKKβ/NF-κB
T21056 709-738 Entity denotes promoter in vitro and in vivo
T21050 770-796 Protein denotes constitutive SerpinB2 gene
T21048 749-759 Protein denotes of C/EBP-β
T21027 606-617 Entity denotes LPS-induced
T21024 0-11 Entity denotes Macrophages
T21004 536-566 Entity denotes the SerpinB2 proximal promoter
T21003 286-321 Protein denotes of the pro-survival factor SerpinB2
T20987 165-192 Entity denotes the bacterial endotoxin LPS
T20983 387-397 Protein denotes IKKβ/NF-κB
T20982 540-548 Protein denotes SerpinB2
T20962 606-625 Protein denotes LPS-induced C/EBP-β
T20957 687-708 Protein denotes the SerpinB2 proximal
T20944 592-604 Protein denotes upon C/EBP-β
T20936 482-486 Protein denotes gene
T20917 323-331 Protein denotes SerpinB2
T20912 473-522 Protein denotes SerpinB2 gene transcription in response to LPS is
T20902 661-666 Protein denotes C/EBP
R14938 T20936 T21091 themeOf gene,gene transcription
R14946 T20962 T21096 themeOf LPS-induced C/EBP-β,LPS-induced C/EBP-β
R14947 T20962 T21097 themeOf LPS-induced C/EBP-β,LPS-induced C/EBP-β
R14958 T21003 T21113 themeOf of the pro-survival factor SerpinB2,massive induction of the pro-survival factor SerpinB2
R14959 T21003 T21114 themeOf of the pro-survival factor SerpinB2,massive induction of the pro-survival factor SerpinB2
R14963 T21027 T21097 causeOf LPS-induced,LPS-induced C/EBP-β
R14967 T21050 T21121 themeOf constitutive SerpinB2 gene,constitutive SerpinB2 gene transcription

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20663 744-748 Negative_regulation denotes loss
T20662 652-656 Binding denotes bind
T20661 652-656 Binding denotes bind
T20660 606-617 Positive_regulation denotes LPS-induced
T20659 752-759 Protein denotes C/EBP-β
T20658 691-717 Protein denotes SerpinB2 proximal promoter
T20657 661-683 Protein denotes C/EBP response element
T20656 618-625 Protein denotes C/EBP-β
T20655 582-591 Positive_regulation denotes dependent
T20654 523-532 Regulation denotes conferred
T20653 504-512 Positive_regulation denotes response
T20652 487-500 Transcription denotes transcription
T20651 597-604 Protein denotes C/EBP-β
T20650 540-566 Protein denotes SerpinB2 proximal promoter
T20649 473-486 Protein denotes SerpinB2 gene
T20648 353-360 Positive_regulation denotes induced
T20647 402-409 Protein denotes p38MAPK
T20646 392-397 Protein denotes NF-κB
T20645 387-391 Protein denotes IKKβ
T20644 323-331 Protein denotes SerpinB2
R14804 T20644 T20648 themeOf SerpinB2,induced
R14805 T20649 T20652 themeOf SerpinB2 gene,transcription
R14806 T20650 T20654 causeOf SerpinB2 proximal promoter,conferred
R14807 T20651 T20655 causeOf C/EBP-β,dependent
R14808 T20652 T20653 themeOf transcription,response
R14809 T20652 T20654 themeOf transcription,conferred
R14810 T20652 T20655 themeOf transcription,dependent
R14811 T20656 T20660 themeOf C/EBP-β,LPS-induced
R14812 T20656 T20661 themeOf C/EBP-β,bind
R14813 T20656 T20662 themeOf C/EBP-β,bind
R14814 T20657 T20661 themeOf C/EBP response element,bind
R14815 T20658 T20662 themeOf SerpinB2 proximal promoter,bind
R14816 T20659 T20663 themeOf C/EBP-β,loss

testone

Id Subject Object Predicate Lexical cue
T18240 744-748 Negative_regulation denotes loss
T18239 652-656 Binding denotes bind
T18238 610-617 Positive_regulation denotes induced
T18237 558-566 Entity denotes promoter
T18236 549-557 Entity denotes proximal
T18174 783-791 Protein denotes SerpinB2
T18173 752-759 Protein denotes C/EBP-β
T18172 691-699 Protein denotes SerpinB2
T18171 618-625 Protein denotes C/EBP-β
T18170 597-604 Protein denotes C/EBP-β
T18169 540-548 Protein denotes SerpinB2
T18168 473-481 Protein denotes SerpinB2
T18167 387-391 Protein denotes IKKβ
T18166 323-331 Protein denotes SerpinB2
T18165 313-321 Protein denotes SerpinB2
R13109 T18171 T18238 themeOf C/EBP-β,induced
R13110 T18171 T18239 themeOf C/EBP-β,bind
R13111 T18173 T18240 themeOf C/EBP-β,loss
R13143 T18237 T18169 partOf promoter,SerpinB2

test3

Id Subject Object Predicate Lexical cue
T18370 797-810 Transcription denotes transcription
T18369 783-791 Protein denotes SerpinB2
T18368 760-769 Positive_regulation denotes abrogates
T18367 752-759 Protein denotes C/EBP-β
T18366 744-748 Negative_regulation denotes loss
T18365 691-699 Protein denotes SerpinB2
T18364 652-656 Binding denotes bind
T18363 618-625 Protein denotes C/EBP-β
T18362 610-617 Positive_regulation denotes induced
T18361 597-604 Protein denotes C/EBP-β
T18360 582-591 Regulation denotes dependent
T18359 540-548 Protein denotes SerpinB2
T18358 487-500 Transcription denotes transcription
T18357 473-481 Protein denotes SerpinB2
T18356 387-391 Protein denotes IKKβ
T18355 353-360 Positive_regulation denotes induced
T18291 783-791 Protein denotes SerpinB2
T18290 752-759 Protein denotes C/EBP-β
T18289 691-699 Protein denotes SerpinB2
T18288 618-625 Protein denotes C/EBP-β
T18287 597-604 Protein denotes C/EBP-β
T18286 540-548 Protein denotes SerpinB2
T18285 473-481 Protein denotes SerpinB2
T18284 387-391 Protein denotes IKKβ
T18283 323-331 Protein denotes SerpinB2
T18282 313-321 Protein denotes SerpinB2
T18354 323-331 Protein denotes SerpinB2
T18353 313-321 Protein denotes SerpinB2
R13158 T18354 T18355 themeOf SerpinB2,induced
R13159 T18357 T18358 themeOf SerpinB2,transcription
R13160 T18358 T18360 themeOf transcription,dependent
R13161 T18361 T18360 causeOf C/EBP-β,dependent
R13162 T18363 T18362 themeOf C/EBP-β,induced
R13163 T18363 T18364 themeOf C/EBP-β,bind
R13164 T18367 T18366 themeOf C/EBP-β,loss
R13165 T18367 T18368 causeOf C/EBP-β,abrogates
R13166 T18369 T18370 themeOf SerpinB2,transcription
R13167 T18370 T18368 themeOf transcription,abrogates