PMC:3589482 / 40237-40472
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18033 | 234-235 | . | denotes | . |
| T18032 | 233-234 | -RRB- | denotes | ) |
| T18031 | 228-233 | NN | denotes | right |
| T18030 | 226-227 | , | denotes | , |
| T18029 | 224-226 | NNP | denotes | 8C |
| T18028 | 219-223 | NNP | denotes | Fig. |
| T18027 | 218-219 | -LRB- | denotes | ( |
| T18026 | 214-217 | NNP | denotes | LPS |
| T18025 | 211-213 | TO | denotes | to |
| T18024 | 202-210 | NN | denotes | response |
| T18023 | 199-201 | IN | denotes | in |
| T18022 | 190-198 | NN | denotes | activity |
| T18021 | 181-189 | NN | denotes | promoter |
| T18020 | 172-180 | CD | denotes | SerpinB2 |
| T18019 | 160-171 | VBD | denotes | potentiated |
| T18018 | 154-159 | NNP | denotes | βS64A |
| T18017 | 153-154 | : | denotes | - |
| T18016 | 148-153 | NNP | denotes | C/EBP |
| T18015 | 145-147 | IN | denotes | of |
| T18014 | 134-144 | NN | denotes | expression |
| T18013 | 130-133 | DT | denotes | the |
| T18012 | 122-129 | IN | denotes | whereas |
| T18011 | 120-121 | , | denotes | , |
| T18010 | 116-120 | NNS | denotes | MEFs |
| T18009 | 102-115 | JJ | denotes | β-transfected |
| T18008 | 101-102 | : | denotes | - |
| T18007 | 96-101 | NNP | denotes | C/EBP |
| T18006 | 86-95 | JJ | denotes | wild-type |
| T18005 | 83-85 | IN | denotes | of |
| T18004 | 78-82 | DT | denotes | that |
| T18003 | 75-77 | TO | denotes | to |
| T18002 | 67-74 | JJ | denotes | similar |
| T18001 | 58-66 | NN | denotes | activity |
| T18000 | 49-57 | NN | denotes | promoter |
| T17999 | 40-48 | CD | denotes | SerpinB2 |
| T17998 | 30-39 | VBD | denotes | exhibited |
| T17997 | 25-29 | NNS | denotes | MEFs |
| T17996 | 6-24 | JJ | denotes | βT188A-transfected |
| T17995 | 5-6 | : | denotes | - |
| T17994 | 0-5 | SYM | denotes | C/EBP |
| R13049 | T17994 | T17996 | punct | C/EBP,βT188A-transfected |
| R13050 | T17995 | T17996 | punct | -,βT188A-transfected |
| R13051 | T17996 | T17997 | compound | βT188A-transfected,MEFs |
| R13052 | T17997 | T17998 | nsubj | MEFs,exhibited |
| R13053 | T17998 | T17998 | ROOT | exhibited,exhibited |
| R13054 | T17999 | T18001 | nummod | SerpinB2,activity |
| R13055 | T18000 | T18001 | compound | promoter,activity |
| R13056 | T18001 | T17998 | dobj | activity,exhibited |
| R13057 | T18002 | T18001 | amod | similar,activity |
| R13058 | T18003 | T18002 | prep | to,similar |
| R13059 | T18004 | T18003 | pobj | that,to |
| R13060 | T18005 | T18004 | prep | of,that |
| R13061 | T18006 | T18010 | amod | wild-type,MEFs |
| R13062 | T18007 | T18009 | amod | C/EBP,β-transfected |
| R13063 | T18008 | T18009 | punct | -,β-transfected |
| R13064 | T18009 | T18010 | amod | β-transfected,MEFs |
| R13065 | T18010 | T18005 | pobj | MEFs,of |
| R13066 | T18011 | T17998 | punct | ",",exhibited |
| R13067 | T18012 | T18019 | mark | whereas,potentiated |
| R13068 | T18013 | T18014 | det | the,expression |
| R13069 | T18014 | T18019 | nsubj | expression,potentiated |
| R13070 | T18015 | T18014 | prep | of,expression |
| R13071 | T18016 | T18015 | pobj | C/EBP,of |
| R13072 | T18017 | T18018 | punct | -,βS64A |
| R13073 | T18018 | T18014 | appos | βS64A,expression |
| R13074 | T18019 | T17998 | advcl | potentiated,exhibited |
| R13075 | T18020 | T18022 | nummod | SerpinB2,activity |
| R13076 | T18021 | T18022 | compound | promoter,activity |
| R13077 | T18022 | T18019 | dobj | activity,potentiated |
| R13078 | T18023 | T18019 | prep | in,potentiated |
| R13079 | T18024 | T18023 | pobj | response,in |
| R13080 | T18025 | T18024 | prep | to,response |
| R13081 | T18026 | T18025 | pobj | LPS,to |
| R13082 | T18027 | T18029 | punct | (,8C |
| R13083 | T18028 | T18029 | compound | Fig.,8C |
| R13084 | T18029 | T18026 | appos | 8C,LPS |
| R13085 | T18030 | T18026 | punct | ",",LPS |
| R13086 | T18031 | T18026 | appos | right,LPS |
| R13087 | T18032 | T18026 | punct | ),LPS |
| R13088 | T18033 | T17998 | punct | .,exhibited |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17047 | 233-234 | -RRB- | denotes | ) |
| T17046 | 228-233 | JJ | denotes | right |
| T17045 | 226-227 | -COMMA- | denotes | , |
| T17044 | 224-226 | NNP | denotes | 8C |
| T17043 | 219-223 | NNP | denotes | Fig. |
| T17042 | 218-219 | -LRB- | denotes | ( |
| T17041 | 214-217 | NN | denotes | LPS |
| T17040 | 211-213 | TO | denotes | to |
| T17039 | 202-210 | NN | denotes | response |
| T17038 | 199-201 | IN | denotes | in |
| T17037 | 190-198 | NN | denotes | activity |
| T17036 | 181-189 | NN | denotes | promoter |
| T17035 | 172-180 | NN | denotes | SerpinB2 |
| T17034 | 160-171 | VB | denotes | potentiated |
| T17033 | 148-159 | NN | denotes | C/EBP-βS64A |
| T17032 | 145-147 | IN | denotes | of |
| T17031 | 134-144 | NN | denotes | expression |
| T17030 | 130-133 | DT | denotes | the |
| T17029 | 122-129 | IN | denotes | whereas |
| T17028 | 120-121 | -COMMA- | denotes | , |
| T17027 | 116-120 | NN | denotes | MEFs |
| T17026 | 96-115 | JJ | denotes | C/EBP-β-transfected |
| T17025 | 86-95 | JJ | denotes | wild-type |
| T17024 | 83-85 | IN | denotes | of |
| T17023 | 78-82 | DT | denotes | that |
| T17022 | 75-77 | TO | denotes | to |
| T17021 | 67-74 | JJ | denotes | similar |
| T17020 | 58-66 | NN | denotes | activity |
| T17019 | 49-57 | NN | denotes | promoter |
| T17018 | 40-48 | NN | denotes | SerpinB2 |
| T17017 | 30-39 | VB | denotes | exhibited |
| T17016 | 25-29 | NN | denotes | MEFs |
| T17015 | 0-24 | JJ | denotes | C/EBP-βT188A-transfected |
| R12394 | T17016 | T17015 | arg1Of | MEFs,C/EBP-βT188A-transfected |
| R12395 | T17016 | T17017 | arg1Of | MEFs,exhibited |
| R12396 | T17017 | T17029 | arg1Of | exhibited,whereas |
| R12397 | T17020 | T17017 | arg2Of | activity,exhibited |
| R12398 | T17020 | T17018 | arg1Of | activity,SerpinB2 |
| R12399 | T17020 | T17019 | arg1Of | activity,promoter |
| R12400 | T17020 | T17021 | arg1Of | activity,similar |
| R12401 | T17021 | T17022 | arg1Of | similar,to |
| R12402 | T17023 | T17022 | arg2Of | that,to |
| R12403 | T17023 | T17024 | arg1Of | that,of |
| R12404 | T17027 | T17024 | arg2Of | MEFs,of |
| R12405 | T17027 | T17025 | arg1Of | MEFs,wild-type |
| R12406 | T17027 | T17026 | arg1Of | MEFs,C/EBP-β-transfected |
| R12407 | T17029 | T17028 | arg1Of | whereas,"," |
| R12408 | T17031 | T17030 | arg1Of | expression,the |
| R12409 | T17031 | T17032 | arg1Of | expression,of |
| R12410 | T17031 | T17034 | arg1Of | expression,potentiated |
| R12411 | T17033 | T17032 | arg2Of | C/EBP-βS64A,of |
| R12412 | T17034 | T17029 | arg2Of | potentiated,whereas |
| R12413 | T17034 | T17038 | arg1Of | potentiated,in |
| R12414 | T17037 | T17034 | arg2Of | activity,potentiated |
| R12415 | T17037 | T17035 | arg1Of | activity,SerpinB2 |
| R12416 | T17037 | T17036 | arg1Of | activity,promoter |
| R12417 | T17039 | T17038 | arg2Of | response,in |
| R12418 | T17039 | T17040 | arg1Of | response,to |
| R12419 | T17041 | T17040 | arg2Of | LPS,to |
| R12420 | T17041 | T17042 | arg1Of | LPS,( |
| R12421 | T17044 | T17042 | arg2Of | 8C,( |
| R12422 | T17044 | T17043 | arg1Of | 8C,Fig. |
| R12423 | T17044 | T17045 | arg1Of | 8C,"," |
| R12424 | T17046 | T17045 | arg2Of | right,"," |
| R12425 | T17047 | T17042 | arg3Of | ),( |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16647 | 172-180 | Protein | denotes | SerpinB2 |
| T16646 | 148-159 | Protein | denotes | C/EBP-βS64A |
| T16645 | 96-103 | Protein | denotes | C/EBP-β |
| T16644 | 40-48 | Protein | denotes | SerpinB2 |
| T16643 | 0-12 | Protein | denotes | C/EBP-βT188A |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17211 | 172-180 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T17210 | 40-48 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T17194 | 96-103 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16667 | 202-217 | http://purl.obolibrary.org/obo/GO_0032496 | denotes | response to LPS |
| T16665 | 190-210 | http://purl.obolibrary.org/obo/GO_0014823 | denotes | activity in response |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16502 | 0-235 | Sentence | denotes | C/EBP-βT188A-transfected MEFs exhibited SerpinB2 promoter activity similar to that of wild-type C/EBP-β-transfected MEFs, whereas the expression of C/EBP-βS64A potentiated SerpinB2 promoter activity in response to LPS (Fig. 8C, right). |
| T242 | 0-235 | Sentence | denotes | C/EBP-βT188A-transfected MEFs exhibited SerpinB2 promoter activity similar to that of wild-type C/EBP-β-transfected MEFs, whereas the expression of C/EBP-βS64A potentiated SerpinB2 promoter activity in response to LPS (Fig. 8C, right). |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16721 | 172-180 | Protein | denotes | SerpinB2 |
| T16720 | 148-159 | Protein | denotes | C/EBP-βS64A |
| T16719 | 96-103 | Protein | denotes | C/EBP-β |
| T16718 | 40-48 | Protein | denotes | SerpinB2 |
| T16717 | 0-12 | Protein | denotes | C/EBP-βT188A |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17179 | 104-115 | Gene_expression | denotes | transfected |
| T17178 | 134-144 | Gene_expression | denotes | expression |
| T17177 | 160-171 | Positive_regulation | denotes | potentiated |
| T17176 | 13-24 | Gene_expression | denotes | transfected |
| T17142 | 172-180 | Protein | denotes | SerpinB2 |
| T17141 | 148-159 | Protein | denotes | C/EBP-βS64A |
| T17140 | 96-103 | Protein | denotes | C/EBP-β |
| T17139 | 40-48 | Protein | denotes | SerpinB2 |
| T17138 | 0-12 | Protein | denotes | C/EBP-βT188A |
| R12476 | T17138 | T17176 | themeOf | C/EBP-βT188A,transfected |
| R12477 | T17140 | T17179 | themeOf | C/EBP-β,transfected |
| R12478 | T17141 | T17178 | themeOf | C/EBP-βS64A,expression |
| R12479 | T17142 | T17177 | themeOf | SerpinB2,potentiated |
| R12493 | T17178 | T17177 | causeOf | expression,potentiated |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17378 | 172-180 | Protein | denotes | SerpinB2 |
| T17377 | 148-159 | Protein | denotes | C/EBP-βS64A |
| T17376 | 96-103 | Protein | denotes | C/EBP-β |
| T17375 | 40-48 | Protein | denotes | SerpinB2 |
| T17374 | 0-12 | Protein | denotes | C/EBP-βT188A |
| T17408 | 160-171 | Positive_regulation | denotes | potentiated |
| T17407 | 134-144 | Gene_expression | denotes | expression |
| T17406 | 104-115 | Gene_expression | denotes | transfected |
| T17405 | 13-24 | Gene_expression | denotes | transfected |
| R12578 | T17374 | T17405 | themeOf | C/EBP-βT188A,transfected |
| R12579 | T17376 | T17406 | themeOf | C/EBP-β,transfected |
| R12580 | T17377 | T17407 | themeOf | C/EBP-βS64A,expression |
| R12594 | T17407 | T17408 | themeOf | expression,potentiated |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17290 | 160-171 | Negative_regulation | denotes | potentiated |
| T17289 | 134-144 | Gene_expression | denotes | expression |
| T17288 | 104-115 | Gene_expression | denotes | transfected |
| T17287 | 13-24 | Gene_expression | denotes | transfected |
| T17254 | 172-180 | Protein | denotes | SerpinB2 |
| T17253 | 148-159 | Protein | denotes | C/EBP-βS64A |
| T17252 | 96-103 | Protein | denotes | C/EBP-β |
| T17251 | 40-48 | Protein | denotes | SerpinB2 |
| T17250 | 0-12 | Protein | denotes | C/EBP-βT188A |
| R12521 | T17250 | T17287 | themeOf | C/EBP-βT188A,transfected |
| R12522 | T17252 | T17288 | themeOf | C/EBP-β,transfected |
| R12523 | T17253 | T17289 | themeOf | C/EBP-βS64A,expression |
| R12542 | T17289 | T17290 | themeOf | expression,potentiated |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17630 | 130-159 | Gene_expression | denotes | the expression of C/EBP-βS64A |
| T17616 | 219-222 | Protein | denotes | Fig |
| T17615 | 40-48 | Protein | denotes | SerpinB2 |
| T17613 | 86-120 | Protein | denotes | wild-type C/EBP-β-transfected MEFs |
| T17610 | 145-159 | Protein | denotes | of C/EBP-βS64A |
| T17608 | 172-180 | Protein | denotes | SerpinB2 |
| T17575 | 0-24 | Protein | denotes | C/EBP-βT188A-transfected |
| T17566 | 172-189 | Entity | denotes | SerpinB2 promoter |
| T17562 | 0-29 | Protein | denotes | C/EBP-βT188A-transfected MEFs |
| T17556 | 214-217 | Entity | denotes | LPS |
| T17555 | 40-57 | Entity | denotes | SerpinB2 promoter |
| T17549 | 96-115 | Protein | denotes | C/EBP-β-transfected |
| R12678 | T17555 | T17615 | partOf | SerpinB2 promoter,SerpinB2 |
| R12680 | T17566 | T17608 | partOf | SerpinB2 promoter,SerpinB2 |
| R12694 | T17610 | T17630 | themeOf | of C/EBP-βS64A,the expression of C/EBP-βS64A |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17475 | 160-171 | Positive_regulation | denotes | potentiated |
| T17474 | 134-144 | Gene_expression | denotes | expression |
| T17473 | 172-189 | Protein | denotes | SerpinB2 promoter |
| T17472 | 148-159 | Protein | denotes | C/EBP-βS64A |
| T17471 | 40-57 | Protein | denotes | SerpinB2 promoter |
| R12630 | T17472 | T17474 | themeOf | C/EBP-βS64A,expression |
| R12631 | T17474 | T17475 | themeOf | expression,potentiated |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16375 | 202-213 | Positive_regulation | denotes | response to |
| T16374 | 134-144 | Gene_expression | denotes | expression |
| T16373 | 104-115 | Gene_expression | denotes | transfected |
| T16342 | 172-180 | Protein | denotes | SerpinB2 |
| T16341 | 148-159 | Protein | denotes | C/EBP-βS64A |
| T16340 | 96-103 | Protein | denotes | C/EBP-β |
| T16339 | 40-48 | Protein | denotes | SerpinB2 |
| T16338 | 0-12 | Protein | denotes | C/EBP-βT188A |
| R11972 | T16340 | T16373 | themeOf | C/EBP-β,transfected |
| R11973 | T16341 | T16374 | themeOf | C/EBP-βS64A,expression |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16486 | 202-210 | Positive_regulation | denotes | response |
| T16485 | 172-180 | Protein | denotes | SerpinB2 |
| T16484 | 160-171 | Negative_regulation | denotes | potentiated |
| T16483 | 148-159 | Protein | denotes | C/EBP-βS64A |
| T16482 | 134-144 | Gene_expression | denotes | expression |
| T16481 | 96-103 | Protein | denotes | C/EBP-β |
| T16480 | 40-48 | Protein | denotes | SerpinB2 |
| T16479 | 0-12 | Protein | denotes | C/EBP-βT188A |
| T16414 | 172-180 | Protein | denotes | SerpinB2 |
| T16413 | 148-159 | Protein | denotes | C/EBP-βS64A |
| T16412 | 96-103 | Protein | denotes | C/EBP-β |
| T16411 | 40-48 | Protein | denotes | SerpinB2 |
| T16410 | 0-12 | Protein | denotes | C/EBP-βT188A |
| R12010 | T16483 | T16482 | themeOf | C/EBP-βS64A,expression |