PMC:3589482 / 4-246
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T765 | 14-20 | NNP | denotes | Factor |
| T766 | 21-26 | NNP | denotes | C/EBP |
| T767 | 26-27 | : | denotes | - |
| T768 | 27-28 | NN | denotes | β |
| T769 | 29-37 | NNP | denotes | Mediates |
| T770 | 38-50 | NNP | denotes | Constitutive |
| T771 | 51-54 | CC | denotes | and |
| T772 | 55-68 | JJ | denotes | LPS-Inducible |
| T773 | 69-82 | NN | denotes | Transcription |
| T774 | 83-85 | IN | denotes | of |
| T775 | 86-92 | NNP | denotes | Murine |
| T776 | 93-101 | NNP | denotes | SerpinB2 |
| T790 | 229-231 | IN | denotes | in |
| T789 | 221-228 | VBN | denotes | induced |
| T788 | 214-220 | RB | denotes | highly |
| T787 | 211-213 | VBZ | denotes | is |
| T786 | 209-210 | -RRB- | denotes | ) |
| T785 | 204-209 | NN | denotes | PAI-2 |
| T784 | 203-204 | -LRB- | denotes | ( |
| T783 | 201-202 | CD | denotes | 2 |
| T782 | 196-200 | NN | denotes | type |
| T781 | 186-195 | NN | denotes | inhibitor |
| T780 | 176-185 | NN | denotes | activator |
| T779 | 164-175 | NN | denotes | plasminogen |
| T778 | 161-163 | CC | denotes | or |
| T777 | 152-160 | NNP | denotes | SerpinB2 |
| T764 | 0-13 | NNP | denotes | Transcription |
| R352 | T765 | T770 | nmod | Factor,Constitutive |
| R353 | T766 | T768 | compound | C/EBP,β |
| R354 | T767 | T768 | punct | -,β |
| R355 | T768 | T770 | compound | β,Constitutive |
| R356 | T769 | T770 | compound | Mediates,Constitutive |
| R357 | T770 | T773 | nmod | Constitutive,Transcription |
| R358 | T771 | T770 | cc | and,Constitutive |
| R359 | T772 | T770 | conj | LPS-Inducible,Constitutive |
| R360 | T773 | T789 | nsubjpass | Transcription,induced |
| R361 | T774 | T773 | prep | of,Transcription |
| R362 | T775 | T777 | compound | Murine,SerpinB2 |
| R363 | T776 | T777 | compound | SerpinB2,SerpinB2 |
| R364 | T777 | T774 | pobj | SerpinB2,of |
| R365 | T778 | T777 | cc | or,SerpinB2 |
| R366 | T779 | T773 | conj | plasminogen,Transcription |
| R367 | T780 | T781 | amod | activator,inhibitor |
| R368 | T781 | T782 | compound | inhibitor,type |
| R369 | T782 | T773 | appos | type,Transcription |
| R370 | T783 | T782 | nummod | 2,type |
| R371 | T784 | T782 | punct | (,type |
| R372 | T785 | T782 | appos | PAI-2,type |
| R373 | T786 | T782 | punct | ),type |
| R374 | T787 | T789 | auxpass | is,induced |
| R375 | T788 | T789 | advmod | highly,induced |
| R376 | T789 | T789 | ROOT | induced,induced |
| R377 | T790 | T789 | prep | in,induced |
| R739 | T764 | T770 | nmod | Transcription,Constitutive |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T239 | 86-92 | NNP | denotes | Murine |
| T240 | 93-101 | NN | denotes | SerpinB2 |
| T254 | 229-231 | IN | denotes | in |
| T253 | 221-228 | VB | denotes | induced |
| T252 | 214-220 | RB | denotes | highly |
| T251 | 211-213 | VB | denotes | is |
| T250 | 209-210 | -RRB- | denotes | ) |
| T249 | 204-209 | NN | denotes | PAI-2 |
| T248 | 203-204 | -LRB- | denotes | ( |
| T247 | 201-202 | CD | denotes | 2 |
| T246 | 196-200 | NN | denotes | type |
| T245 | 186-195 | NN | denotes | inhibitor |
| T244 | 176-185 | NN | denotes | activator |
| T243 | 164-175 | NN | denotes | plasminogen |
| T242 | 161-163 | CC | denotes | or |
| T241 | 152-160 | NN | denotes | SerpinB2 |
| T230 | 0-13 | NNP | denotes | Transcription |
| T231 | 14-20 | NNP | denotes | Factor |
| T232 | 21-28 | NNP | denotes | C/EBP-β |
| T233 | 29-37 | NNP | denotes | Mediates |
| T234 | 38-50 | NNP | denotes | Constitutive |
| T235 | 51-54 | CC | denotes | and |
| T236 | 55-68 | JJ | denotes | LPS-Inducible |
| T237 | 69-82 | NN | denotes | Transcription |
| T238 | 83-85 | IN | denotes | of |
| R47 | T240 | T238 | arg2Of | SerpinB2,of |
| R48 | T240 | T239 | arg1Of | SerpinB2,Murine |
| R49 | T241 | T242 | arg1Of | SerpinB2,or |
| R50 | T243 | T242 | arg2Of | plasminogen,or |
| R51 | T246 | T241 | arg1Of | type,SerpinB2 |
| R52 | T246 | T243 | arg1Of | type,plasminogen |
| R53 | T246 | T244 | arg1Of | type,activator |
| R54 | T246 | T245 | arg1Of | type,inhibitor |
| R55 | T246 | T247 | arg1Of | type,2 |
| R56 | T246 | T248 | arg1Of | type,( |
| R57 | T246 | T251 | arg1Of | type,is |
| R58 | T246 | T253 | arg2Of | type,induced |
| R61 | T249 | T248 | arg2Of | PAI-2,( |
| R62 | T250 | T248 | arg3Of | ),( |
| R63 | T253 | T251 | arg2Of | induced,is |
| R64 | T253 | T252 | arg1Of | induced,highly |
| R65 | T253 | T254 | arg1Of | induced,in |
| R667 | T234 | T231 | arg1Of | Constitutive,Factor |
| R668 | T234 | T232 | arg1Of | Constitutive,C/EBP-β |
| R669 | T234 | T233 | arg1Of | Constitutive,Mediates |
| R670 | T234 | T235 | arg1Of | Constitutive,and |
| R671 | T236 | T235 | arg2Of | LPS-Inducible,and |
| R673 | T237 | T234 | arg1Of | Transcription,Constitutive |
| R674 | T237 | T236 | arg1Of | Transcription,LPS-Inducible |
| R675 | T237 | T238 | arg1Of | Transcription,of |
| R666 | T234 | T230 | arg1Of | Constitutive,Transcription |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T157 | 21-28 | Protein | denotes | C/EBP-β |
| T158 | 93-101 | Protein | denotes | SerpinB2 |
| T159 | 152-160 | Protein | denotes | SerpinB2 |
| T160 | 164-202 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T161 | 204-209 | Protein | denotes | PAI-2 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T530 | 152-160 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T537 | 201-207 | http://www.uniprot.org/uniprot/P05120 | denotes | 2 (PAI |
| T524 | 21-28 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T529 | 93-101 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T176 | 0-13 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | Transcription |
| T177 | 69-82 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | Transcription |
| T178 | 164-185 | http://purl.obolibrary.org/obo/GO_0031639 | denotes | plasminogen activator |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 102-141 | Sentence | denotes | C/EBP-β Mediates SerpinB2 Transcription |
| T3 | 143-151 | Sentence | denotes | Abstract |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T210 | 21-28 | Protein | denotes | C/EBP-β |
| T212 | 152-160 | Protein | denotes | SerpinB2 |
| T213 | 164-202 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T214 | 204-209 | Protein | denotes | PAI-2 |
| T211 | 93-101 | Protein | denotes | SerpinB2 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T510 | 55-68 | Positive_regulation | denotes | LPS-Inducible |
| T511 | 69-82 | Transcription | denotes | Transcription |
| T512 | 221-228 | Positive_regulation | denotes | induced |
| T491 | 21-28 | Protein | denotes | C/EBP-β |
| T492 | 93-101 | Protein | denotes | SerpinB2 |
| T493 | 152-160 | Protein | denotes | SerpinB2 |
| T494 | 164-202 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T495 | 204-209 | Protein | denotes | PAI-2 |
| R307 | T511 | T510 | themeOf | Transcription,LPS-Inducible |
| R676 | T492 | T511 | themeOf | SerpinB2,Transcription |
| R677 | T493 | T512 | themeOf | SerpinB2,induced |
| R678 | T494 | T512 | themeOf | plasminogen activator inhibitor type 2,induced |
| R679 | T495 | T512 | themeOf | PAI-2,induced |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T601 | 21-28 | Protein | denotes | C/EBP-β |
| T602 | 93-101 | Protein | denotes | SerpinB2 |
| T620 | 69-82 | Transcription | denotes | Transcription |
| T621 | 29-37 | Positive_regulation | denotes | Mediates |
| T603 | 152-160 | Protein | denotes | SerpinB2 |
| T604 | 164-202 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T605 | 204-209 | Protein | denotes | PAI-2 |
| T622 | 221-228 | Positive_regulation | denotes | induced |
| R694 | T601 | T621 | causeOf | C/EBP-β,Mediates |
| R715 | T602 | T620 | themeOf | SerpinB2,Transcription |
| R717 | T604 | T622 | themeOf | plasminogen activator inhibitor type 2,induced |
| R732 | T620 | T621 | themeOf | Transcription,Mediates |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T567 | 21-28 | Protein | denotes | C/EBP-β |
| T568 | 93-101 | Protein | denotes | SerpinB2 |
| T586 | 69-82 | Transcription | denotes | Transcription |
| T587 | 29-37 | Positive_regulation | denotes | Mediates |
| T588 | 55-68 | Positive_regulation | denotes | LPS-Inducible |
| T569 | 152-160 | Protein | denotes | SerpinB2 |
| T570 | 164-202 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T571 | 204-209 | Protein | denotes | PAI-2 |
| T589 | 221-228 | Positive_regulation | denotes | induced |
| R684 | T570 | T589 | themeOf | plasminogen activator inhibitor type 2,induced |
| R681 | T567 | T587 | causeOf | C/EBP-β,Mediates |
| R682 | T568 | T586 | themeOf | SerpinB2,Transcription |
| R683 | T569 | T589 | themeOf | SerpinB2,induced |
| R691 | T586 | T587 | themeOf | Transcription,Mediates |
| R692 | T586 | T588 | themeOf | Transcription,LPS-Inducible |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T749 | 83-101 | Protein | denotes | of Murine SerpinB2 |
| T758 | 55-101 | Transcription | denotes | LPS-Inducible Transcription of Murine SerpinB2 |
| T739 | 204-209 | Protein | denotes | PAI-2 |
| T740 | 152-210 | Protein | denotes | SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) |
| T744 | 164-210 | Protein | denotes | plasminogen activator inhibitor type 2 (PAI-2) |
| R349 | T749 | T758 | themeOf | of Murine SerpinB2,LPS-Inducible Transcription of Murine SerpinB2 |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T643 | 221-228 | Positive_regulation | denotes | induced |
| T642 | 221-228 | Positive_regulation | denotes | induced |
| T640 | 204-209 | Protein | denotes | PAI-2 |
| T635 | 0-28 | Protein | denotes | Transcription Factor C/EBP-β |
| T636 | 86-101 | Protein | denotes | Murine SerpinB2 |
| T637 | 69-82 | Transcription | denotes | Transcription |
| T638 | 29-37 | Positive_regulation | denotes | Mediates |
| T639 | 164-202 | Protein | denotes | plasminogen activator inhibitor type 2 |
| R322 | T640 | T643 | themeOf | PAI-2,induced |
| R703 | T635 | T638 | causeOf | Transcription Factor C/EBP-β,Mediates |
| R704 | T636 | T637 | themeOf | Murine SerpinB2,Transcription |
| R705 | T637 | T638 | themeOf | Transcription,Mediates |
| R706 | T639 | T642 | themeOf | plasminogen activator inhibitor type 2,induced |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20 | 21-28 | Protein | denotes | C/EBP-β |
| T21 | 93-101 | Protein | denotes | SerpinB2 |
| T24 | 204-209 | Protein | denotes | PAI-2 |
| T23 | 164-202 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T22 | 152-160 | Protein | denotes | SerpinB2 |
| R1 | T24 | T23 | equivalentTo | PAI-2,plasminogen activator inhibitor type 2 |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T49 | 21-28 | Protein | denotes | C/EBP-β |
| T50 | 93-101 | Protein | denotes | SerpinB2 |
| T68 | 21-28 | Protein | denotes | C/EBP-β |
| T69 | 93-101 | Protein | denotes | SerpinB2 |
| T73 | 221-228 | Positive_regulation | denotes | induced |
| T72 | 204-209 | Protein | denotes | PAI-2 |
| T71 | 164-202 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T70 | 152-160 | Protein | denotes | SerpinB2 |
| T53 | 204-209 | Protein | denotes | PAI-2 |
| T52 | 164-202 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T51 | 152-160 | Protein | denotes | SerpinB2 |
| R15 | T71 | T73 | themeOf | plasminogen activator inhibitor type 2,induced |
| R16 | T72 | T71 | equivalentTo | PAI-2,plasminogen activator inhibitor type 2 |