PMC:3589482 / 39478-39649
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17879 | 114-124 | VBG | denotes | modulating |
| T17878 | 111-113 | IN | denotes | in |
| T17877 | 102-110 | VBN | denotes | involved |
| T17876 | 99-101 | VB | denotes | be |
| T17875 | 95-98 | MD | denotes | may |
| T17874 | 89-94 | WDT | denotes | which |
| T17873 | 87-88 | , | denotes | , |
| T17872 | 86-87 | -RRB- | denotes | ) |
| T17871 | 84-86 | NNP | denotes | 8B |
| T17870 | 79-83 | NNP | denotes | Fig. |
| T17869 | 78-79 | -LRB- | denotes | ( |
| T17868 | 73-77 | NNP | denotes | βS64 |
| T17867 | 72-73 | : | denotes | - |
| T17866 | 67-72 | NNP | denotes | C/EBP |
| T17865 | 63-66 | CC | denotes | and |
| T17864 | 57-62 | NNP | denotes | βT188 |
| T17863 | 56-57 | : | denotes | - |
| T17862 | 51-56 | NNP | denotes | C/EBP |
| T17861 | 49-50 | , | denotes | , |
| T17860 | 44-49 | NNS | denotes | sites |
| T17859 | 28-43 | NN | denotes | phosphorylation |
| T17858 | 17-27 | JJ | denotes | additional |
| T17857 | 8-16 | VBZ | denotes | contains |
| T17856 | 6-7 | NN | denotes | β |
| T17855 | 5-6 | : | denotes | - |
| T17854 | 0-5 | SYM | denotes | C/EBP |
| T17886 | 170-171 | . | denotes | . |
| T17885 | 157-170 | NN | denotes | transcription |
| T17884 | 152-156 | NN | denotes | gene |
| T17883 | 143-151 | JJ | denotes | SerpinB2 |
| T17882 | 131-142 | JJ | denotes | β-dependent |
| T17881 | 130-131 | : | denotes | - |
| T17880 | 125-130 | NNP | denotes | C/EBP |
| R12909 | T17854 | T17857 | punct | C/EBP,contains |
| R12910 | T17855 | T17856 | punct | -,β |
| R12911 | T17856 | T17857 | nsubj | β,contains |
| R12912 | T17857 | T17857 | ROOT | contains,contains |
| R12913 | T17858 | T17860 | amod | additional,sites |
| R12914 | T17859 | T17860 | amod | phosphorylation,sites |
| R12915 | T17860 | T17857 | dobj | sites,contains |
| R12916 | T17861 | T17860 | punct | ",",sites |
| R12917 | T17862 | T17864 | compound | C/EBP,βT188 |
| R12918 | T17863 | T17864 | punct | -,βT188 |
| R12919 | T17864 | T17860 | appos | βT188,sites |
| R12920 | T17865 | T17864 | cc | and,βT188 |
| R12921 | T17866 | T17864 | conj | C/EBP,βT188 |
| R12922 | T17867 | T17864 | punct | -,βT188 |
| R12923 | T17868 | T17864 | conj | βS64,βT188 |
| R12924 | T17869 | T17868 | punct | (,βS64 |
| R12925 | T17870 | T17871 | compound | Fig.,8B |
| R12926 | T17871 | T17868 | appos | 8B,βS64 |
| R12927 | T17872 | T17868 | punct | ),βS64 |
| R12928 | T17873 | T17864 | punct | ",",βT188 |
| R12929 | T17874 | T17877 | nsubjpass | which,involved |
| R12930 | T17875 | T17877 | aux | may,involved |
| R12931 | T17876 | T17877 | auxpass | be,involved |
| R12932 | T17877 | T17864 | relcl | involved,βT188 |
| R12933 | T17878 | T17877 | prep | in,involved |
| R12934 | T17879 | T17878 | pcomp | modulating,in |
| R12935 | T17880 | T17879 | dobj | C/EBP,modulating |
| R12936 | T17881 | T17880 | punct | -,C/EBP |
| R12937 | T17882 | T17885 | amod | β-dependent,transcription |
| R12938 | T17883 | T17885 | compound | SerpinB2,transcription |
| R12939 | T17884 | T17885 | compound | gene,transcription |
| R12940 | T17885 | T17880 | appos | transcription,C/EBP |
| R12941 | T17886 | T17857 | punct | .,contains |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16917 | 157-170 | NN | denotes | transcription |
| T16916 | 152-156 | NN | denotes | gene |
| T16915 | 143-151 | NN | denotes | SerpinB2 |
| T16914 | 125-142 | JJ | denotes | C/EBP-β-dependent |
| T16913 | 114-124 | VB | denotes | modulating |
| T16912 | 111-113 | IN | denotes | in |
| T16911 | 102-110 | VB | denotes | involved |
| T16910 | 99-101 | VB | denotes | be |
| T16909 | 95-98 | MD | denotes | may |
| T16908 | 89-94 | WDT | denotes | which |
| T16907 | 87-88 | -COMMA- | denotes | , |
| T16906 | 86-87 | -RRB- | denotes | ) |
| T16905 | 84-86 | NN | denotes | 8B |
| T16904 | 79-83 | NN | denotes | Fig. |
| T16903 | 78-79 | -LRB- | denotes | ( |
| T16902 | 67-77 | NN | denotes | C/EBP-βS64 |
| T16901 | 63-66 | CC | denotes | and |
| T16900 | 51-62 | NN | denotes | C/EBP-βT188 |
| T16899 | 49-50 | -COMMA- | denotes | , |
| T16898 | 44-49 | NN | denotes | sites |
| T16897 | 28-43 | NN | denotes | phosphorylation |
| T16896 | 17-27 | JJ | denotes | additional |
| T16895 | 8-16 | VB | denotes | contains |
| T16894 | 0-7 | NN | denotes | C/EBP-β |
| R12268 | T16894 | T16895 | arg1Of | C/EBP-β,contains |
| R12269 | T16898 | T16895 | arg2Of | sites,contains |
| R12270 | T16898 | T16896 | arg1Of | sites,additional |
| R12271 | T16898 | T16897 | arg1Of | sites,phosphorylation |
| R12272 | T16898 | T16899 | arg1Of | sites,"," |
| R12273 | T16900 | T16901 | arg1Of | C/EBP-βT188,and |
| R12274 | T16901 | T16899 | arg2Of | and,"," |
| R12275 | T16901 | T16903 | arg1Of | and,( |
| R12276 | T16901 | T16907 | arg1Of | and,"," |
| R12277 | T16901 | T16908 | arg1Of | and,which |
| R12278 | T16901 | T16909 | arg1Of | and,may |
| R12279 | T16901 | T16910 | arg1Of | and,be |
| R12280 | T16901 | T16911 | arg2Of | and,involved |
| R12281 | T16902 | T16901 | arg2Of | C/EBP-βS64,and |
| R12282 | T16905 | T16903 | arg2Of | 8B,( |
| R12283 | T16905 | T16904 | arg1Of | 8B,Fig. |
| R12284 | T16906 | T16903 | arg3Of | ),( |
| R12285 | T16911 | T16909 | arg2Of | involved,may |
| R12286 | T16911 | T16910 | arg2Of | involved,be |
| R12287 | T16911 | T16912 | arg1Of | involved,in |
| R12288 | T16913 | T16912 | arg2Of | modulating,in |
| R12289 | T16917 | T16913 | arg2Of | transcription,modulating |
| R12290 | T16917 | T16914 | arg1Of | transcription,C/EBP-β-dependent |
| R12291 | T16917 | T16915 | arg1Of | transcription,SerpinB2 |
| R12292 | T16917 | T16916 | arg1Of | transcription,gene |
bionlp-st-ge-2016-coref
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16609 | 28-49 | Antecedent | denotes | phosphorylation sites |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16632 | 143-151 | Protein | denotes | SerpinB2 |
| T16631 | 125-132 | Protein | denotes | C/EBP-β |
| T16630 | 0-7 | Protein | denotes | C/EBP-β |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17205 | 143-151 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T17192 | 125-132 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T17191 | 0-7 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16660 | 157-170 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
| T16654 | 28-43 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16497 | 0-171 | Sentence | denotes | C/EBP-β contains additional phosphorylation sites, C/EBP-βT188 and C/EBP-βS64 (Fig. 8B), which may be involved in modulating C/EBP-β-dependent SerpinB2 gene transcription. |
| T237 | 0-171 | Sentence | denotes | C/EBP-β contains additional phosphorylation sites, C/EBP-βT188 and C/EBP-βS64 (Fig. 8B), which may be involved in modulating C/EBP-β-dependent SerpinB2 gene transcription. |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16706 | 143-151 | Protein | denotes | SerpinB2 |
| T16705 | 125-132 | Protein | denotes | C/EBP-β |
| T16704 | 0-7 | Protein | denotes | C/EBP-β |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17165 | 133-142 | Positive_regulation | denotes | dependent |
| T17164 | 114-124 | Regulation | denotes | modulating |
| T17163 | 157-170 | Transcription | denotes | transcription |
| T17127 | 143-151 | Protein | denotes | SerpinB2 |
| T17126 | 125-132 | Protein | denotes | C/EBP-β |
| T17125 | 0-7 | Protein | denotes | C/EBP-β |
| R12465 | T17127 | T17163 | themeOf | SerpinB2,transcription |
| R12486 | T17163 | T17164 | themeOf | transcription,modulating |
| R12487 | T17163 | T17165 | themeOf | transcription,dependent |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17363 | 143-151 | Protein | denotes | SerpinB2 |
| T17362 | 125-132 | Protein | denotes | C/EBP-β |
| T17361 | 0-7 | Protein | denotes | C/EBP-β |
| T17395 | 157-170 | Transcription | denotes | transcription |
| T17394 | 133-142 | Regulation | denotes | dependent |
| T17393 | 114-124 | Regulation | denotes | modulating |
| R12566 | T17362 | T17394 | causeOf | C/EBP-β,dependent |
| R12567 | T17363 | T17395 | themeOf | SerpinB2,transcription |
| R12590 | T17395 | T17393 | themeOf | transcription,modulating |
| R12591 | T17395 | T17394 | themeOf | transcription,dependent |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17277 | 133-142 | Regulation | denotes | dependent |
| T17276 | 114-124 | Regulation | denotes | modulating |
| T17275 | 157-170 | Transcription | denotes | transcription |
| T17239 | 143-151 | Protein | denotes | SerpinB2 |
| T17238 | 125-132 | Protein | denotes | C/EBP-β |
| T17237 | 0-7 | Protein | denotes | C/EBP-β |
| R12509 | T17237 | T17276 | causeOf | C/EBP-β,modulating |
| R12510 | T17238 | T17277 | causeOf | C/EBP-β,dependent |
| R12511 | T17239 | T17275 | themeOf | SerpinB2,transcription |
| R12537 | T17275 | T17276 | themeOf | transcription,modulating |
| R12538 | T17275 | T17277 | themeOf | transcription,dependent |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17650 | 125-170 | Transcription | denotes | C/EBP-β-dependent SerpinB2 gene transcription |
| T17645 | 125-170 | Regulation | denotes | C/EBP-β-dependent SerpinB2 gene transcription |
| T17642 | 111-170 | Regulation | denotes | in modulating C/EBP-β-dependent SerpinB2 gene transcription |
| T17619 | 17-49 | Entity | denotes | additional phosphorylation sites |
| T17617 | 143-156 | Protein | denotes | SerpinB2 gene |
| T17611 | 125-142 | Protein | denotes | C/EBP-β-dependent |
| T17607 | 0-7 | Protein | denotes | C/EBP-β |
| T17583 | 143-151 | Protein | denotes | SerpinB2 |
| T17560 | 67-77 | Protein | denotes | C/EBP-βS64 |
| R12695 | T17611 | T17645 | causeOf | C/EBP-β-dependent,C/EBP-β-dependent SerpinB2 gene transcription |
| R12697 | T17617 | T17650 | themeOf | SerpinB2 gene,C/EBP-β-dependent SerpinB2 gene transcription |
| R12704 | T17650 | T17642 | themeOf | C/EBP-β-dependent SerpinB2 gene transcription,in modulating C/EBP-β-dependent SerpinB2 gene transcription |
| R12705 | T17650 | T17645 | themeOf | C/EBP-β-dependent SerpinB2 gene transcription,C/EBP-β-dependent SerpinB2 gene transcription |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17454 | 125-132 | Protein | denotes | C/EBP-β |
| T17453 | 79-86 | Protein | denotes | Fig. 8B |
| T17452 | 67-77 | Protein | denotes | C/EBP-βS64 |
| T17451 | 51-62 | Protein | denotes | C/EBP-βT188 |
| T17450 | 0-7 | Protein | denotes | C/EBP-β |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16362 | 157-170 | Transcription | denotes | transcription |
| T16361 | 133-142 | Regulation | denotes | dependent |
| T16360 | 114-124 | Regulation | denotes | modulating |
| T16359 | 28-43 | Phosphorylation | denotes | phosphorylation |
| T16327 | 143-151 | Protein | denotes | SerpinB2 |
| T16326 | 125-132 | Protein | denotes | C/EBP-β |
| T16325 | 0-7 | Protein | denotes | C/EBP-β |
| R11961 | T16325 | T16359 | themeOf | C/EBP-β,phosphorylation |
| R11962 | T16326 | T16360 | themeOf | C/EBP-β,modulating |
| R11963 | T16326 | T16361 | causeOf | C/EBP-β,dependent |
| R11964 | T16327 | T16362 | themeOf | SerpinB2,transcription |
| R11978 | T16362 | T16361 | themeOf | transcription,dependent |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16461 | 157-170 | Transcription | denotes | transcription |
| T16460 | 143-151 | Protein | denotes | SerpinB2 |
| T16459 | 133-142 | Regulation | denotes | dependent |
| T16458 | 125-132 | Protein | denotes | C/EBP-β |
| T16457 | 114-124 | Regulation | denotes | modulating |
| T16456 | 28-43 | Phosphorylation | denotes | phosphorylation |
| T16455 | 0-7 | Protein | denotes | C/EBP-β |
| T16399 | 143-151 | Protein | denotes | SerpinB2 |
| T16398 | 125-132 | Protein | denotes | C/EBP-β |
| T16397 | 0-7 | Protein | denotes | C/EBP-β |
| R11997 | T16455 | T16456 | themeOf | C/EBP-β,phosphorylation |
| R11998 | T16458 | T16459 | causeOf | C/EBP-β,dependent |
| R11999 | T16459 | T16457 | themeOf | dependent,modulating |
| R12000 | T16460 | T16461 | themeOf | SerpinB2,transcription |
| R12001 | T16461 | T16459 | themeOf | transcription,dependent |