PMC:3589482 / 39148-39477 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

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    pmc-enju-pas

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    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T16626","span":{"begin":112,"end":120},"obj":"Protein"},{"id":"T16625","span":{"begin":67,"end":72},"obj":"Protein"},{"id":"T16624","span":{"begin":51,"end":62},"obj":"Protein"},{"id":"T16623","span":{"begin":18,"end":49},"obj":"Protein"},{"id":"T16629","span":{"begin":283,"end":291},"obj":"Protein"},{"id":"T16628","span":{"begin":224,"end":231},"obj":"Protein"},{"id":"T16627","span":{"begin":163,"end":170},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T17204","span":{"begin":283,"end":291},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T17203","span":{"begin":112,"end":120},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T17197","span":{"begin":67,"end":72},"obj":"http://www.uniprot.org/uniprot/P28033"},{"id":"T17190","span":{"begin":224,"end":231},"obj":"http://www.uniprot.org/uniprot/P28033"},{"id":"T17189","span":{"begin":163,"end":170},"obj":"http://www.uniprot.org/uniprot/P28033"},{"id":"T17188","span":{"begin":18,"end":25},"obj":"http://www.uniprot.org/uniprot/P28033"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T16666","span":{"begin":313,"end":328},"obj":"http://purl.obolibrary.org/obo/GO_0032496"},{"id":"T16664","span":{"begin":301,"end":321},"obj":"http://purl.obolibrary.org/obo/GO_0014823"},{"id":"T16662","span":{"begin":269,"end":279},"obj":"http://purl.obolibrary.org/obo/GO_0065007"},{"id":"T16653","span":{"begin":205,"end":220},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}

    sentences

    {"project":"sentences","denotations":[{"id":"T16496","span":{"begin":0,"end":329},"obj":"Sentence"},{"id":"T236","span":{"begin":0,"end":329},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}

    simple1

    {"project":"simple1","denotations":[{"id":"T16703","span":{"begin":283,"end":291},"obj":"Protein"},{"id":"T16702","span":{"begin":224,"end":231},"obj":"Protein"},{"id":"T16701","span":{"begin":163,"end":170},"obj":"Protein"},{"id":"T16700","span":{"begin":112,"end":120},"obj":"Protein"},{"id":"T16699","span":{"begin":67,"end":72},"obj":"Protein"},{"id":"T16698","span":{"begin":51,"end":62},"obj":"Protein"},{"id":"T16697","span":{"begin":18,"end":49},"obj":"Protein"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T17162","span":{"begin":313,"end":321},"obj":"Regulation"},{"id":"T17161","span":{"begin":205,"end":220},"obj":"Phosphorylation"},{"id":"T17160","span":{"begin":269,"end":279},"obj":"Regulation"},{"id":"T17159","span":{"begin":103,"end":111},"obj":"Positive_regulation"},{"id":"T17158","span":{"begin":0,"end":10},"obj":"Gene_expression"},{"id":"T17124","span":{"begin":283,"end":291},"obj":"Protein"},{"id":"T17123","span":{"begin":224,"end":231},"obj":"Protein"},{"id":"T17122","span":{"begin":163,"end":170},"obj":"Protein"},{"id":"T17121","span":{"begin":112,"end":120},"obj":"Protein"},{"id":"T17120","span":{"begin":67,"end":72},"obj":"Protein"},{"id":"T17119","span":{"begin":51,"end":62},"obj":"Protein"},{"id":"T17118","span":{"begin":18,"end":49},"obj":"Protein"}],"relations":[{"id":"R12458","pred":"themeOf","subj":"T17118","obj":"T17158"},{"id":"R12459","pred":"themeOf","subj":"T17119","obj":"T17158"},{"id":"R12460","pred":"themeOf","subj":"T17120","obj":"T17158"},{"id":"R12461","pred":"themeOf","subj":"T17121","obj":"T17159"},{"id":"R12462","pred":"themeOf","subj":"T17123","obj":"T17161"},{"id":"R12463","pred":"themeOf","subj":"T17124","obj":"T17160"},{"id":"R12464","pred":"themeOf","subj":"T17124","obj":"T17162"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T17360","span":{"begin":283,"end":291},"obj":"Protein"},{"id":"T17359","span":{"begin":224,"end":231},"obj":"Protein"},{"id":"T17358","span":{"begin":163,"end":170},"obj":"Protein"},{"id":"T17357","span":{"begin":112,"end":120},"obj":"Protein"},{"id":"T17356","span":{"begin":67,"end":72},"obj":"Protein"},{"id":"T17355","span":{"begin":51,"end":62},"obj":"Protein"},{"id":"T17354","span":{"begin":18,"end":49},"obj":"Protein"},{"id":"T17392","span":{"begin":205,"end":220},"obj":"Phosphorylation"},{"id":"T17391","span":{"begin":269,"end":279},"obj":"Regulation"},{"id":"T17390","span":{"begin":0,"end":10},"obj":"Gene_expression"},{"id":"T17389","span":{"begin":103,"end":111},"obj":"Positive_regulation"}],"relations":[{"id":"R12561","pred":"themeOf","subj":"T17354","obj":"T17390"},{"id":"R12562","pred":"themeOf","subj":"T17355","obj":"T17390"},{"id":"R12563","pred":"themeOf","subj":"T17356","obj":"T17390"},{"id":"R12564","pred":"themeOf","subj":"T17359","obj":"T17392"},{"id":"R12565","pred":"themeOf","subj":"T17360","obj":"T17391"},{"id":"R12587","pred":"themeOf","subj":"T17390","obj":"T17389"},{"id":"R12588","pred":"themeOf","subj":"T17390","obj":"T17389"},{"id":"R12589","pred":"themeOf","subj":"T17390","obj":"T17389"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T17274","span":{"begin":255,"end":261},"obj":"Regulation"},{"id":"T17273","span":{"begin":205,"end":220},"obj":"Phosphorylation"},{"id":"T17272","span":{"begin":103,"end":111},"obj":"Positive_regulation"},{"id":"T17271","span":{"begin":0,"end":10},"obj":"Gene_expression"},{"id":"T17236","span":{"begin":283,"end":291},"obj":"Protein"},{"id":"T17235","span":{"begin":224,"end":231},"obj":"Protein"},{"id":"T17234","span":{"begin":163,"end":170},"obj":"Protein"},{"id":"T17233","span":{"begin":112,"end":120},"obj":"Protein"},{"id":"T17232","span":{"begin":67,"end":72},"obj":"Protein"},{"id":"T17231","span":{"begin":51,"end":62},"obj":"Protein"},{"id":"T17230","span":{"begin":18,"end":49},"obj":"Protein"}],"relations":[{"id":"R12506","pred":"themeOf","subj":"T17230","obj":"T17271"},{"id":"R12534","pred":"themeOf","subj":"T17271","obj":"T17272"},{"id":"R12508","pred":"themeOf","subj":"T17235","obj":"T17273"},{"id":"R12536","pred":"themeOf","subj":"T17273","obj":"T17274"},{"id":"R12507","pred":"themeOf","subj":"T17231","obj":"T17271"},{"id":"R12535","pred":"themeOf","subj":"T17271","obj":"T17272"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T17648","span":{"begin":0,"end":50},"obj":"Gene_expression"},{"id":"T17626","span":{"begin":112,"end":129},"obj":"Entity"},{"id":"T17624","span":{"begin":67,"end":73},"obj":"Protein"},{"id":"T17621","span":{"begin":283,"end":291},"obj":"Protein"},{"id":"T17609","span":{"begin":112,"end":120},"obj":"Protein"},{"id":"T17603","span":{"begin":11,"end":50},"obj":"Protein"},{"id":"T17602","span":{"begin":325,"end":328},"obj":"Entity"},{"id":"T17599","span":{"begin":51,"end":73},"obj":"Protein"},{"id":"T17594","span":{"begin":235,"end":239},"obj":"Entity"},{"id":"T17573","span":{"begin":153,"end":170},"obj":"Protein"},{"id":"T17571","span":{"begin":221,"end":231},"obj":"Protein"},{"id":"T17568","span":{"begin":283,"end":300},"obj":"Entity"},{"id":"T17567","span":{"begin":172,"end":175},"obj":"Protein"},{"id":"T17565","span":{"begin":76,"end":80},"obj":"Protein"}],"relations":[{"id":"R12681","pred":"partOf","subj":"T17568","obj":"T17621"},{"id":"R12689","pred":"themeOf","subj":"T17603","obj":"T17648"},{"id":"R12701","pred":"partOf","subj":"T17626","obj":"T17609"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T17447","span":{"begin":103,"end":111},"obj":"Positive_regulation"},{"id":"T17446","span":{"begin":103,"end":111},"obj":"Positive_regulation"},{"id":"T17445","span":{"begin":103,"end":111},"obj":"Positive_regulation"},{"id":"T17444","span":{"begin":0,"end":10},"obj":"Gene_expression"},{"id":"T17443","span":{"begin":0,"end":10},"obj":"Gene_expression"},{"id":"T17442","span":{"begin":0,"end":10},"obj":"Gene_expression"},{"id":"T17441","span":{"begin":283,"end":300},"obj":"Protein"},{"id":"T17440","span":{"begin":224,"end":231},"obj":"Protein"},{"id":"T17439","span":{"begin":112,"end":129},"obj":"Protein"},{"id":"T17438","span":{"begin":67,"end":80},"obj":"Protein"},{"id":"T17437","span":{"begin":51,"end":62},"obj":"Protein"},{"id":"T17436","span":{"begin":18,"end":49},"obj":"Protein"},{"id":"T17449","span":{"begin":269,"end":279},"obj":"Regulation"},{"id":"T17448","span":{"begin":205,"end":220},"obj":"Phosphorylation"}],"relations":[{"id":"R12613","pred":"themeOf","subj":"T17436","obj":"T17442"},{"id":"R12614","pred":"themeOf","subj":"T17437","obj":"T17443"},{"id":"R12615","pred":"themeOf","subj":"T17438","obj":"T17444"},{"id":"R12616","pred":"themeOf","subj":"T17440","obj":"T17448"},{"id":"R12617","pred":"themeOf","subj":"T17441","obj":"T17449"},{"id":"R12618","pred":"themeOf","subj":"T17442","obj":"T17445"},{"id":"R12619","pred":"themeOf","subj":"T17443","obj":"T17446"},{"id":"R12620","pred":"themeOf","subj":"T17444","obj":"T17447"},{"id":"R12621","pred":"causeOf","subj":"T17448","obj":"T17449"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}

    testone

    {"project":"testone","denotations":[{"id":"T16358","span":{"begin":205,"end":220},"obj":"Phosphorylation"},{"id":"T16357","span":{"begin":103,"end":111},"obj":"Positive_regulation"},{"id":"T16356","span":{"begin":0,"end":10},"obj":"Gene_expression"},{"id":"T16324","span":{"begin":283,"end":291},"obj":"Protein"},{"id":"T16323","span":{"begin":224,"end":231},"obj":"Protein"},{"id":"T16322","span":{"begin":163,"end":170},"obj":"Protein"},{"id":"T16321","span":{"begin":112,"end":120},"obj":"Protein"},{"id":"T16320","span":{"begin":67,"end":72},"obj":"Protein"},{"id":"T16319","span":{"begin":51,"end":62},"obj":"Protein"},{"id":"T16318","span":{"begin":18,"end":49},"obj":"Protein"}],"relations":[{"id":"R11958","pred":"themeOf","subj":"T16318","obj":"T16356"},{"id":"R11959","pred":"themeOf","subj":"T16319","obj":"T16356"},{"id":"R11960","pred":"themeOf","subj":"T16323","obj":"T16358"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}

    test3

    {"project":"test3","denotations":[{"id":"T16454","span":{"begin":283,"end":291},"obj":"Protein"},{"id":"T16453","span":{"begin":269,"end":279},"obj":"Regulation"},{"id":"T16452","span":{"begin":224,"end":231},"obj":"Protein"},{"id":"T16451","span":{"begin":205,"end":220},"obj":"Phosphorylation"},{"id":"T16450","span":{"begin":163,"end":170},"obj":"Protein"},{"id":"T16449","span":{"begin":112,"end":120},"obj":"Protein"},{"id":"T16448","span":{"begin":103,"end":111},"obj":"Positive_regulation"},{"id":"T16447","span":{"begin":67,"end":72},"obj":"Protein"},{"id":"T16446","span":{"begin":51,"end":62},"obj":"Protein"},{"id":"T16445","span":{"begin":18,"end":49},"obj":"Protein"},{"id":"T16444","span":{"begin":0,"end":10},"obj":"Gene_expression"},{"id":"T16396","span":{"begin":283,"end":291},"obj":"Protein"},{"id":"T16395","span":{"begin":224,"end":231},"obj":"Protein"},{"id":"T16394","span":{"begin":163,"end":170},"obj":"Protein"},{"id":"T16393","span":{"begin":112,"end":120},"obj":"Protein"},{"id":"T16392","span":{"begin":67,"end":72},"obj":"Protein"},{"id":"T16391","span":{"begin":51,"end":62},"obj":"Protein"},{"id":"T16390","span":{"begin":18,"end":49},"obj":"Protein"}],"relations":[{"id":"R11994","pred":"themeOf","subj":"T16445","obj":"T16444"},{"id":"R11995","pred":"themeOf","subj":"T16446","obj":"T16444"},{"id":"R11996","pred":"themeOf","subj":"T16452","obj":"T16451"}],"text":"Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS."}