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PMC:3589482 / 387-522 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T837 133-134 -RRB- denotes )
T836 129-133 CD denotes TLR4
T835 128-129 -LRB- denotes (
T834 126-127 CD denotes 4
T833 117-125 NN denotes receptor
T832 107-116 JJ denotes toll-like
T831 103-106 DT denotes the
T830 99-102 IN denotes via
T829 88-98 NN denotes expression
T828 79-87 NNP denotes SerpinB2
T827 72-78 VB denotes induce
T826 68-71 MD denotes can
T825 66-67 , denotes ,
T824 57-66 NN denotes endotoxin
T823 47-56 JJ denotes bacterial
T822 40-46 JJ denotes potent
T821 38-39 DT denotes a
T820 36-37 , denotes ,
T819 35-36 -RRB- denotes )
T818 32-35 NNP denotes LPS
T817 31-32 -LRB- denotes (
T816 12-30 NNP denotes Lipopolysaccharide
T815 10-11 . denotes .
T814 0-10 NNS denotes activators
R403 T816 T827 npadvmod Lipopolysaccharide,induce
R404 T817 T818 punct (,LPS
R405 T818 T816 appos LPS,Lipopolysaccharide
R406 T819 T816 punct ),Lipopolysaccharide
R407 T820 T816 punct ",",Lipopolysaccharide
R408 T821 T824 det a,endotoxin
R409 T822 T824 amod potent,endotoxin
R410 T823 T824 amod bacterial,endotoxin
R411 T824 T816 appos endotoxin,Lipopolysaccharide
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T300 133-134 -RRB- denotes )
T299 129-133 NN denotes TLR4
T298 128-129 -LRB- denotes (
T297 126-127 CD denotes 4
T296 117-125 NN denotes receptor
T295 107-116 JJ denotes toll-like
T294 103-106 DT denotes the
T293 99-102 IN denotes via
T292 88-98 NN denotes expression
T291 79-87 NN denotes SerpinB2
T290 72-78 VB denotes induce
T289 68-71 MD denotes can
T288 66-67 -COMMA- denotes ,
T287 57-66 NN denotes endotoxin
T286 47-56 JJ denotes bacterial
T285 40-46 JJ denotes potent
T284 38-39 DT denotes a
T283 36-37 -COMMA- denotes ,
T282 35-36 -RRB- denotes )
T281 32-35 NN denotes LPS
T280 31-32 -LRB- denotes (
T279 12-30 NN denotes Lipopolysaccharide
T278 0-10 NN denotes activators
R90 T279 T280 arg1Of Lipopolysaccharide,(
R91 T279 T283 arg1Of Lipopolysaccharide,","
R92 T279 T289 arg1Of Lipopolysaccharide,can
R93 T279 T290 arg1Of Lipopolysaccharide,induce
R94 T281 T280 arg2Of LPS,(
R95 T282 T280 arg3Of ),(
R96 T287 T283 arg2Of endotoxin,","
R97 T287 T284 arg1Of endotoxin,a
R98 T287 T285 arg1Of endotoxin,potent
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T162 79-87 Protein denotes SerpinB2
T163 107-127 Protein denotes toll-like receptor 4
T164 129-133 Protein denotes TLR4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 129-133 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 79-87 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

simple1

Id Subject Object Predicate Lexical cue
T215 79-87 Protein denotes SerpinB2
T216 107-127 Protein denotes toll-like receptor 4
T217 129-133 Protein denotes TLR4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T514 72-78 Positive_regulation denotes induce
T513 88-98 Gene_expression denotes expression
T498 129-133 Protein denotes TLR4
T496 79-87 Protein denotes SerpinB2
T497 107-127 Protein denotes toll-like receptor 4
R308 T513 T514 themeOf expression,induce
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T606 79-87 Protein denotes SerpinB2
T607 107-127 Protein denotes toll-like receptor 4
T608 129-133 Protein denotes TLR4
T623 88-98 Gene_expression denotes expression
T624 72-78 Positive_regulation denotes induce
R718 T606 T623 themeOf SerpinB2,expression
R720 T607 T624 causeOf toll-like receptor 4,induce
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T572 79-87 Protein denotes SerpinB2
T573 107-127 Protein denotes toll-like receptor 4
T574 129-133 Protein denotes TLR4
T590 88-98 Gene_expression denotes expression
T591 72-78 Positive_regulation denotes induce
R685 T572 T590 themeOf SerpinB2,expression
R686 T573 T591 causeOf toll-like receptor 4,induce
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T759 79-98 Gene_expression denotes SerpinB2 expression
T750 32-35 Entity denotes LPS
T748 79-87 Protein denotes SerpinB2
T709 12-37 Entity denotes Lipopolysaccharide (LPS),
T711 57-66 Entity denotes endotoxin
T714 103-134 Protein denotes the toll-like receptor 4 (TLR4)
T715 129-133 Protein denotes TLR4
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T647 72-78 Positive_regulation denotes induce
T646 88-98 Gene_expression denotes expression
T645 79-87 Protein denotes SerpinB2
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce

testone

Id Subject Object Predicate Lexical cue
T40 88-98 Gene_expression denotes expression
T39 72-78 Positive_regulation denotes induce
T27 129-133 Protein denotes TLR4
T26 107-127 Protein denotes toll-like receptor 4
T25 79-87 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R8 T40 T39 themeOf expression,induce
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T78 129-133 Protein denotes TLR4
T77 107-127 Protein denotes toll-like receptor 4
T76 88-98 Gene_expression denotes expression
T75 79-87 Protein denotes SerpinB2
T74 72-78 Positive_regulation denotes induce
T56 129-133 Protein denotes TLR4
T55 107-127 Protein denotes toll-like receptor 4
T54 79-87 Protein denotes SerpinB2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4