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PMC:3589482 / 38454-39477 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T17689 139-143 WDT denotes that
T17688 133-138 NNS denotes sites
T17687 117-132 NN denotes phosphorylation
T17686 115-116 NN denotes β
T17685 114-115 : denotes -
T17684 109-114 NNP denotes C/EBP
T17683 97-108 VB denotes investigate
T17682 94-96 TO denotes To
T17681 92-93 . denotes .
T17680 91-92 NNP denotes ]
T17679 89-91 CD denotes 63
T17678 88-89 NNP denotes [
T17677 78-87 JJ denotes potential
T17676 62-77 NN denotes transactivation
T17675 58-61 PRP$ denotes its
T17674 49-57 VB denotes modulate
T17673 46-48 TO denotes to
T17672 35-45 VBN denotes recognized
T17671 30-34 RB denotes well
T17670 27-29 VBZ denotes is
T17669 25-26 NN denotes β
T17668 24-25 : denotes -
T17667 19-24 NNP denotes C/EBP
T17666 16-18 IN denotes of
T17665 0-15 NNP denotes Phosphorylation
T17853 1022-1023 . denotes .
T17852 1019-1022 NNP denotes LPS
T17851 1016-1018 TO denotes to
T17850 1007-1015 NN denotes response
T17849 1004-1006 IN denotes in
T17848 995-1003 NN denotes activity
T17847 986-994 NN denotes promoter
T17846 977-985 NNP denotes SerpinB2
T17845 974-976 IN denotes of
T17844 963-973 NN denotes regulation
T17843 959-962 DT denotes the
T17842 956-958 IN denotes in
T17841 949-955 NN denotes factor
T17840 943-948 JJ denotes major
T17839 941-942 DT denotes a
T17838 937-940 RB denotes not
T17837 934-936 VBZ denotes is
T17836 929-933 CD denotes T217
T17835 926-928 IN denotes at
T17834 924-925 NN denotes β
T17833 923-924 : denotes -
T17832 918-923 NNP denotes C/EBP
T17831 915-917 IN denotes of
T17830 899-914 NN denotes phosphorylation
T17829 894-898 IN denotes that
T17828 883-893 VBG denotes confirming
T17827 881-882 : denotes ;
T17826 880-881 -RRB- denotes )
T17825 875-880 NN denotes right
T17824 873-874 , denotes ,
T17823 871-873 NNP denotes 8C
T17822 866-870 NNP denotes Fig.
T17821 865-866 -LRB- denotes (
T17820 863-864 NN denotes β
T17819 862-863 : denotes -
T17818 857-862 NNP denotes C/EBP
T17817 847-856 JJ denotes wild-type
T17816 844-846 IN denotes of
T17815 839-843 DT denotes that
T17814 833-838 IN denotes above
T17813 824-832 NN denotes activity
T17812 815-823 NN denotes promoter
T17811 806-814 JJ denotes SerpinB2
T17810 797-805 VB denotes increase
T17809 783-796 RB denotes significantly
T17808 779-782 RB denotes not
T17807 775-778 VBD denotes did
T17806 770-774 NNS denotes MEFs
T17805 768-769 CD denotes −
T17804 767-768 VBD denotes /
T17803 766-767 NNP denotes −
T17802 761-766 NNP denotes Cebpb
T17801 758-760 IN denotes in
T17800 756-757 , denotes ,
T17799 750-756 NNP denotes βT217A
T17798 745-750 NNP denotes C/EBP
T17797 743-744 , denotes ,
T17796 737-743 JJ denotes mutant
T17795 720-736 NN denotes phospho-acceptor
T17794 718-719 NN denotes β
T17793 717-718 : denotes -
T17792 712-717 NNP denotes C/EBP
T17791 708-711 DT denotes the
T17790 705-707 IN denotes of
T17789 694-704 NN denotes Expression
T17788 692-693 . denotes .
T17787 679-692 NN denotes transcription
T17786 674-678 NN denotes gene
T17785 665-673 NNP denotes SerpinB2
T17784 653-664 JJ denotes LPS-induced
T17783 650-652 TO denotes to
T17782 648-649 NN denotes β
T17781 647-648 : denotes -
T17780 642-647 NNP denotes C/EBP
T17779 639-641 IN denotes of
T17778 628-638 NN denotes importance
T17777 624-627 DT denotes the
T17776 613-623 VBG denotes confirming
T17775 611-612 , denotes ,
T17774 610-611 -RRB- denotes )
T17773 606-610 VBD denotes left
T17772 604-605 , denotes ,
T17771 602-604 NNP denotes 8C
T17770 597-601 NNP denotes Fig.
T17769 596-597 -LRB- denotes (
T17768 591-595 VBP denotes fold
T17767 589-590 CD denotes 3
T17766 588-589 NN denotes ∼
T17765 585-587 IN denotes by
T17764 581-584 NNP denotes LPS
T17763 578-580 IN denotes of
T17762 569-577 NN denotes presence
T17761 565-568 DT denotes the
T17760 562-564 IN denotes in
T17759 551-561 NN denotes expression
T17758 546-550 NN denotes gene
T17757 537-545 NN denotes reporter
T17756 526-536 NN denotes luciferase
T17755 517-525 NNP denotes SerpinB2
T17754 506-516 VBD denotes stimulated
T17753 492-505 RB denotes significantly
T17752 487-491 NNS denotes MEFs
T17751 485-486 CD denotes −
T17750 484-485 VBD denotes /
T17749 483-484 NNP denotes −
T17748 478-483 NNP denotes Cebpb
T17747 475-477 IN denotes in
T17746 473-474 NN denotes β
T17745 472-473 : denotes -
T17744 467-472 NNP denotes C/EBP
T17743 457-466 JJ denotes wild-type
T17742 454-456 IN denotes of
T17741 440-453 NN denotes Re-expression
T17740 438-439 . denotes .
T17739 434-438 NNS denotes MEFs
T17738 432-433 CD denotes −
T17737 431-432 VBD denotes /
T17736 430-431 NNP denotes −
T17735 425-430 NNP denotes Cebpb
T17734 422-424 IN denotes in
T17733 413-421 NN denotes reporter
T17732 402-412 NN denotes luciferase
T17731 393-401 NNP denotes SerpinB2
T17730 386-392 NN denotes murine
T17729 376-385 JJ denotes pGLmP-539
T17728 372-375 DT denotes the
T17727 367-371 IN denotes with
T17726 361-366 IN denotes along
T17725 359-360 , denotes ,
T17724 352-359 NN denotes alanine
T17723 349-351 DT denotes an
T17722 346-348 TO denotes to
T17721 338-345 VBN denotes mutated
T17720 334-337 VBD denotes was
T17719 326-333 NN denotes residue
T17718 319-325 NN denotes serine
T17717 316-318 CC denotes or
T17716 306-315 NN denotes threonine
T17715 297-305 JJ denotes critical
T17714 293-296 DT denotes the
T17713 287-292 WDT denotes which
T17712 284-286 IN denotes in
T17711 276-283 NNS denotes mutants
T17710 259-275 NN denotes phospho-acceptor
T17709 257-258 NN denotes β
T17708 256-257 : denotes -
T17707 251-256 NNP denotes C/EBP
T17706 243-250 JJ denotes several
T17705 230-242 VBD denotes co-expressed
T17704 227-229 PRP denotes we
T17703 225-226 , denotes ,
T17702 224-225 -RRB- denotes )
T17701 222-224 NNP denotes 8B
T17700 217-221 NNP denotes Fig.
T17699 216-217 -LRB- denotes (
T17698 207-215 NN denotes activity
T17697 198-206 NN denotes promoter
T17696 189-197 JJ denotes proximal
T17695 180-188 JJ denotes SerpinB2
T17694 165-179 JJ denotes LPS-stimulated
T17693 161-164 IN denotes for
T17692 151-160 JJ denotes important
T17691 148-150 VB denotes be
T17690 144-147 MD denotes may
R12721 T17666 T17665 prep of,Phosphorylation
R12722 T17667 T17666 pobj C/EBP,of
R12723 T17668 T17669 punct -,β
R12724 T17669 T17672 nsubjpass β,recognized
R12725 T17670 T17672 auxpass is,recognized
R12726 T17671 T17672 advmod well,recognized
R12728 T17673 T17674 aux to,modulate
R12729 T17674 T17672 xcomp modulate,recognized
R12730 T17675 T17677 poss its,potential
R12731 T17676 T17677 compound transactivation,potential
R12732 T17677 T17674 dobj potential,modulate
R12733 T17678 T17680 nmod [,]
R12734 T17679 T17680 nummod 63,]
R12735 T17680 T17677 appos ],potential
R12737 T17682 T17683 aux To,investigate
R12738 T17683 T17705 advcl investigate,co-expressed
R12739 T17684 T17688 nmod C/EBP,sites
R12740 T17685 T17686 punct -,β
R12741 T17686 T17688 nmod β,sites
R12742 T17687 T17688 compound phosphorylation,sites
R12743 T17688 T17683 dobj sites,investigate
R12744 T17689 T17691 nsubj that,be
R12745 T17690 T17691 aux may,be
R12746 T17691 T17688 relcl be,sites
R12747 T17692 T17691 acomp important,be
R12748 T17693 T17692 prep for,important
R12749 T17694 T17698 amod LPS-stimulated,activity
R12750 T17695 T17698 amod SerpinB2,activity
R12751 T17696 T17698 amod proximal,activity
R12752 T17697 T17698 compound promoter,activity
R12753 T17698 T17693 pobj activity,for
R12754 T17699 T17701 punct (,8B
R12755 T17700 T17701 compound Fig.,8B
R12756 T17701 T17688 appos 8B,sites
R12757 T17702 T17688 punct ),sites
R12758 T17703 T17705 punct ",",co-expressed
R12759 T17704 T17705 nsubj we,co-expressed
R12760 T17705 T17705 ROOT co-expressed,co-expressed
R12761 T17706 T17711 amod several,mutants
R12762 T17707 T17711 nmod C/EBP,mutants
R12763 T17708 T17709 punct -,β
R12764 T17709 T17711 nmod β,mutants
R12765 T17710 T17711 compound phospho-acceptor,mutants
R12766 T17711 T17705 dobj mutants,co-expressed
R12767 T17712 T17721 prep in,mutated
R12768 T17713 T17712 pobj which,in
R12769 T17714 T17716 det the,threonine
R12770 T17715 T17716 amod critical,threonine
R12771 T17716 T17719 poss threonine,residue
R12772 T17717 T17716 cc or,threonine
R12773 T17718 T17719 compound serine,residue
R12774 T17719 T17721 nsubjpass residue,mutated
R12775 T17720 T17721 auxpass was,mutated
R12776 T17721 T17711 relcl mutated,mutants
R12777 T17722 T17721 prep to,mutated
R12778 T17723 T17724 det an,alanine
R12779 T17724 T17722 pobj alanine,to
R12780 T17725 T17721 punct ",",mutated
R12781 T17726 T17721 prep along,mutated
R12782 T17727 T17726 prep with,along
R12783 T17728 T17733 det the,reporter
R12784 T17729 T17733 amod pGLmP-539,reporter
R12785 T17730 T17733 compound murine,reporter
R12786 T17731 T17733 compound SerpinB2,reporter
R12787 T17732 T17733 compound luciferase,reporter
R12788 T17733 T17727 pobj reporter,with
R12789 T17734 T17733 prep in,reporter
R12790 T17735 T17736 compound Cebpb,−
R12791 T17736 T17734 pobj −,in
R12792 T17737 T17721 advcl /,mutated
R12793 T17738 T17739 nummod −,MEFs
R12794 T17739 T17737 dobj MEFs,/
R12795 T17740 T17705 punct .,co-expressed
R12796 T17741 T17750 nsubj Re-expression,/
R12797 T17742 T17741 prep of,Re-expression
R12798 T17743 T17746 amod wild-type,β
R12799 T17744 T17746 compound C/EBP,β
R12800 T17745 T17746 punct -,β
R12801 T17746 T17742 pobj β,of
R12802 T17747 T17746 prep in,β
R12803 T17748 T17749 compound Cebpb,−
R12804 T17749 T17747 pobj −,in
R12805 T17750 T17750 ROOT /,/
R12806 T17751 T17752 nummod −,MEFs
R12807 T17752 T17750 dobj MEFs,/
R12808 T17753 T17754 advmod significantly,stimulated
R12809 T17754 T17750 conj stimulated,/
R12810 T17755 T17759 compound SerpinB2,expression
R12811 T17756 T17758 compound luciferase,gene
R12812 T17757 T17758 compound reporter,gene
R12813 T17758 T17759 compound gene,expression
R12814 T17759 T17754 dobj expression,stimulated
R12815 T17760 T17754 prep in,stimulated
R12816 T17761 T17762 det the,presence
R12817 T17762 T17760 pobj presence,in
R12818 T17763 T17762 prep of,presence
R12819 T17764 T17763 pobj LPS,of
R12820 T17765 T17754 prep by,stimulated
R12821 T17766 T17768 nmod ∼,fold
R12822 T17767 T17766 nummod 3,∼
R12823 T17768 T17765 pobj fold,by
R12824 T17769 T17768 punct (,fold
R12825 T17770 T17771 compound Fig.,8C
R12826 T17771 T17768 appos 8C,fold
R12827 T17772 T17773 punct ",",left
R12828 T17773 T17750 conj left,/
R12829 T17774 T17773 punct ),left
R12830 T17775 T17773 punct ",",left
R12831 T17776 T17773 advcl confirming,left
R12832 T17777 T17778 det the,importance
R12833 T17778 T17776 dobj importance,confirming
R12834 T17779 T17778 prep of,importance
R12835 T17780 T17782 compound C/EBP,β
R12836 T17781 T17782 punct -,β
R12837 T17782 T17779 pobj β,of
R12838 T17783 T17784 aux to,LPS-induced
R12839 T17784 T17782 relcl LPS-induced,β
R12840 T17785 T17787 compound SerpinB2,transcription
R12841 T17786 T17787 compound gene,transcription
R12842 T17787 T17784 dobj transcription,LPS-induced
R12843 T17788 T17773 punct .,left
R12844 T17789 T17804 nsubj Expression,/
R12845 T17790 T17789 prep of,Expression
R12846 T17791 T17792 det the,C/EBP
R12847 T17792 T17790 pobj C/EBP,of
R12848 T17793 T17794 punct -,β
R12849 T17794 T17796 amod β,mutant
R12850 T17795 T17796 compound phospho-acceptor,mutant
R12851 T17796 T17789 appos mutant,Expression
R12852 T17797 T17789 punct ",",Expression
R12853 T17798 T17799 compound C/EBP,βT217A
R12854 T17799 T17789 appos βT217A,Expression
R12855 T17800 T17789 punct ",",Expression
R12856 T17801 T17789 prep in,Expression
R12857 T17802 T17803 compound Cebpb,−
R12858 T17803 T17801 pobj −,in
R12859 T17804 T17804 ROOT /,/
R12860 T17805 T17806 nummod −,MEFs
R12861 T17806 T17810 nsubj MEFs,increase
R12862 T17807 T17810 aux did,increase
R12863 T17808 T17810 neg not,increase
R12864 T17809 T17810 advmod significantly,increase
R12865 T17810 T17804 ccomp increase,/
R12866 T17811 T17813 amod SerpinB2,activity
R12867 T17812 T17813 compound promoter,activity
R12868 T17813 T17810 dobj activity,increase
R12869 T17814 T17813 prep above,activity
R12870 T17815 T17814 pobj that,above
R12871 T17816 T17815 prep of,that
R12872 T17817 T17820 amod wild-type,β
R12873 T17818 T17820 compound C/EBP,β
R12874 T17819 T17820 punct -,β
R12875 T17820 T17816 pobj β,of
R12876 T17821 T17823 punct (,8C
R12877 T17822 T17823 compound Fig.,8C
R12878 T17823 T17810 npadvmod 8C,increase
R12879 T17824 T17823 punct ",",8C
R12880 T17825 T17823 appos right,8C
R12881 T17826 T17823 punct ),8C
R12882 T17827 T17810 punct ;,increase
R12883 T17828 T17810 advcl confirming,increase
R12884 T17829 T17837 mark that,is
R12885 T17830 T17837 nsubj phosphorylation,is
R12886 T17831 T17830 prep of,phosphorylation
R12887 T17832 T17831 pobj C/EBP,of
R12888 T17833 T17834 punct -,β
R12889 T17834 T17830 conj β,phosphorylation
R12890 T17835 T17830 prep at,phosphorylation
R12891 T17836 T17835 pobj T217,at
R12892 T17837 T17828 ccomp is,confirming
R12893 T17838 T17837 neg not,is
R12894 T17839 T17841 det a,factor
R12895 T17840 T17841 amod major,factor
R12896 T17841 T17837 attr factor,is
R12897 T17842 T17841 prep in,factor
R12898 T17843 T17844 det the,regulation
R12899 T17844 T17842 pobj regulation,in
R12900 T17845 T17844 prep of,regulation
R12901 T17846 T17848 compound SerpinB2,activity
R12902 T17847 T17848 compound promoter,activity
R12903 T17848 T17845 pobj activity,of
R12904 T17849 T17841 prep in,factor
R12905 T17850 T17849 pobj response,in
R12906 T17851 T17850 prep to,response
R12907 T17852 T17851 pobj LPS,to
R12908 T17853 T17804 punct .,/

2_test

Id Subject Object Predicate Lexical cue
23472114-21257317-87899185 89-91 21257317 denotes 63
T93262 89-91 21257317 denotes 63

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16762 189-197 JJ denotes proximal
T16761 180-188 NN denotes SerpinB2
T16760 165-179 JJ denotes LPS-stimulated
T16759 161-164 IN denotes for
T16758 151-160 JJ denotes important
T16757 148-150 VB denotes be
T16756 144-147 MD denotes may
T16755 139-143 WDT denotes that
T16754 133-138 NN denotes sites
T16753 117-132 NN denotes phosphorylation
T16752 109-116 JJ denotes C/EBP-β
T16751 97-108 VB denotes investigate
T16750 94-96 TO denotes To
T16749 91-92 -RRB- denotes ]
T16748 89-91 CD denotes 63
T16747 88-89 -LRB- denotes [
T16746 78-87 NN denotes potential
T16745 62-77 NN denotes transactivation
T16744 58-61 PRP-DOLLAR- denotes its
T16743 49-57 VB denotes modulate
T16742 46-48 TO denotes to
T16741 35-45 VB denotes recognized
T16740 30-34 RB denotes well
T16739 27-29 VB denotes is
T16738 19-26 NN denotes C/EBP-β
T16737 16-18 IN denotes of
T16736 0-15 NN denotes Phosphorylation
T16893 1019-1022 NN denotes LPS
T16892 1016-1018 TO denotes to
T16891 1007-1015 NN denotes response
T16890 1004-1006 IN denotes in
T16889 995-1003 NN denotes activity
T16888 986-994 NN denotes promoter
T16887 977-985 NN denotes SerpinB2
T16886 974-976 IN denotes of
T16885 963-973 NN denotes regulation
T16884 959-962 DT denotes the
T16883 956-958 IN denotes in
T16882 949-955 NN denotes factor
T16881 943-948 JJ denotes major
T16880 941-942 DT denotes a
T16879 937-940 RB denotes not
T16878 934-936 VB denotes is
T16877 929-933 NN denotes T217
T16876 926-928 IN denotes at
T16875 918-925 NN denotes C/EBP-β
T16874 915-917 IN denotes of
T16873 899-914 NN denotes phosphorylation
T16872 894-898 IN denotes that
T16871 883-893 VB denotes confirming
T16870 881-882 -COLON- denotes ;
T16869 880-881 -RRB- denotes )
T16868 875-880 JJ denotes right
T16867 873-874 -COMMA- denotes ,
T16866 871-873 NNP denotes 8C
T16865 866-870 NNP denotes Fig.
T16864 865-866 -LRB- denotes (
T16863 857-864 NN denotes C/EBP-β
T16862 847-856 JJ denotes wild-type
T16861 844-846 IN denotes of
T16860 839-843 DT denotes that
T16859 833-838 IN denotes above
T16858 824-832 NN denotes activity
T16857 815-823 NN denotes promoter
T16856 806-814 NN denotes SerpinB2
T16855 797-805 VB denotes increase
T16854 783-796 RB denotes significantly
T16853 779-782 RB denotes not
T16852 775-778 VB denotes did
T16851 770-774 NN denotes MEFs
T16850 761-769 NNP denotes Cebpb−/−
T16849 758-760 IN denotes in
T16848 756-757 -COMMA- denotes ,
T16847 745-756 NN denotes C/EBPβT217A
T16846 743-744 -COMMA- denotes ,
T16845 737-743 NN denotes mutant
T16844 720-736 NN denotes phospho-acceptor
T16843 712-719 NN denotes C/EBP-β
T16842 708-711 DT denotes the
T16841 705-707 IN denotes of
T16840 694-704 NN denotes Expression
T16839 679-692 NN denotes transcription
T16838 674-678 NN denotes gene
T16837 665-673 NN denotes SerpinB2
T16836 653-664 JJ denotes LPS-induced
T16835 650-652 TO denotes to
T16834 642-649 NN denotes C/EBP-β
T16833 639-641 IN denotes of
T16832 628-638 NN denotes importance
T16831 624-627 DT denotes the
T16830 613-623 VB denotes confirming
T16829 611-612 -COMMA- denotes ,
T16828 610-611 -RRB- denotes )
T16827 606-610 JJ denotes left
T16826 604-605 -COMMA- denotes ,
T16825 602-604 NNP denotes 8C
T16824 597-601 NNP denotes Fig.
T16823 596-597 -LRB- denotes (
T16822 591-595 JJ denotes fold
T16821 588-590 CD denotes ∼3
T16820 585-587 IN denotes by
T16819 581-584 NN denotes LPS
T16818 578-580 IN denotes of
T16817 569-577 NN denotes presence
T16816 565-568 DT denotes the
T16815 562-564 IN denotes in
T16814 551-561 NN denotes expression
T16813 546-550 NN denotes gene
T16812 537-545 NN denotes reporter
T16811 526-536 NN denotes luciferase
T16810 517-525 NN denotes SerpinB2
T16809 506-516 VB denotes stimulated
T16808 492-505 RB denotes significantly
T16807 487-491 NN denotes MEFs
T16806 478-486 NNP denotes Cebpb−/−
T16805 475-477 IN denotes in
T16804 467-474 NN denotes C/EBP-β
T16803 457-466 JJ denotes wild-type
T16802 454-456 IN denotes of
T16801 440-453 NN denotes Re-expression
T16800 434-438 NN denotes MEFs
T16799 425-433 NNP denotes Cebpb−/−
T16798 422-424 IN denotes in
T16797 413-421 NN denotes reporter
T16796 402-412 NN denotes luciferase
T16795 393-401 NN denotes SerpinB2
T16794 386-392 JJ denotes murine
T16793 376-385 NN denotes pGLmP-539
T16792 372-375 DT denotes the
T16791 367-371 IN denotes with
T16790 361-366 IN denotes along
T16789 359-360 -COMMA- denotes ,
T16788 352-359 NN denotes alanine
T16787 349-351 DT denotes an
T16786 346-348 TO denotes to
T16785 338-345 VB denotes mutated
T16784 334-337 VB denotes was
T16783 326-333 NN denotes residue
T16782 319-325 NN denotes serine
T16781 316-318 CC denotes or
T16780 306-315 NN denotes threonine
T16779 297-305 JJ denotes critical
T16778 293-296 DT denotes the
T16777 287-292 WDT denotes which
T16776 284-286 IN denotes in
T16775 276-283 NN denotes mutants
T16774 259-275 NN denotes phospho-acceptor
T16773 251-258 JJ denotes C/EBP-β
T16772 243-250 JJ denotes several
T16771 230-242 VB denotes co-expressed
T16770 227-229 PRP denotes we
T16769 225-226 -COMMA- denotes ,
T16768 224-225 -RRB- denotes )
T16767 222-224 NN denotes 8B
T16766 217-221 NN denotes Fig.
T16765 216-217 -LRB- denotes (
T16764 207-215 NN denotes activity
T16763 198-206 NN denotes promoter
R12106 T16736 T16737 arg1Of Phosphorylation,of
R12107 T16736 T16739 arg1Of Phosphorylation,is
R12108 T16736 T16741 arg2Of Phosphorylation,recognized
R12109 T16736 T16743 arg1Of Phosphorylation,modulate
R12110 T16738 T16737 arg2Of C/EBP-β,of
R12111 T16741 T16739 arg2Of recognized,is
R12112 T16741 T16740 arg1Of recognized,well
R12113 T16743 T16741 arg3Of modulate,recognized
R12114 T16743 T16742 arg1Of modulate,to
R12115 T16743 T16747 arg1Of modulate,[
R12116 T16746 T16743 arg2Of potential,modulate
R12117 T16746 T16744 arg1Of potential,its
R12118 T16746 T16745 arg1Of potential,transactivation
R12119 T16748 T16747 arg2Of 63,[
R12120 T16749 T16747 arg3Of ],[
R12121 T16751 T16750 arg1Of investigate,To
R12122 T16754 T16751 arg2Of sites,investigate
R12123 T16754 T16752 arg1Of sites,C/EBP-β
R12124 T16754 T16753 arg1Of sites,phosphorylation
R12125 T16754 T16755 arg1Of sites,that
R12126 T16754 T16756 arg1Of sites,may
R12127 T16754 T16757 arg1Of sites,be
R12128 T16754 T16758 arg1Of sites,important
R12129 T16757 T16756 arg2Of be,may
R12130 T16758 T16757 arg2Of important,be
R12131 T16758 T16759 arg1Of important,for
R12132 T16764 T16759 arg2Of activity,for
R12133 T16764 T16760 arg1Of activity,LPS-stimulated
R12134 T16764 T16761 arg1Of activity,SerpinB2
R12135 T16764 T16762 arg1Of activity,proximal
R12136 T16764 T16763 arg1Of activity,promoter
R12137 T16764 T16765 arg1Of activity,(
R12138 T16767 T16765 arg2Of 8B,(
R12139 T16767 T16766 arg1Of 8B,Fig.
R12140 T16768 T16765 arg3Of ),(
R12141 T16770 T16751 arg1Of we,investigate
R12142 T16770 T16771 arg1Of we,co-expressed
R12143 T16771 T16750 modOf co-expressed,To
R12144 T16771 T16769 arg1Of co-expressed,","
R12145 T16775 T16771 arg2Of mutants,co-expressed
R12146 T16775 T16772 arg1Of mutants,several
R12147 T16775 T16773 arg1Of mutants,C/EBP-β
R12148 T16775 T16774 arg1Of mutants,phospho-acceptor
R12149 T16775 T16776 arg2Of mutants,in
R12150 T16775 T16777 arg1Of mutants,which
R12151 T16775 T16789 arg1Of mutants,","
R12152 T16775 T16790 arg1Of mutants,along
R12153 T16780 T16781 arg1Of threonine,or
R12154 T16782 T16781 arg2Of serine,or
R12155 T16783 T16778 arg1Of residue,the
R12156 T16783 T16779 arg1Of residue,critical
R12157 T16783 T16780 arg1Of residue,threonine
R12158 T16783 T16782 arg1Of residue,serine
R12159 T16783 T16784 arg1Of residue,was
R12160 T16783 T16785 arg2Of residue,mutated
R12161 T16785 T16776 arg1Of mutated,in
R12162 T16785 T16784 arg2Of mutated,was
R12163 T16785 T16786 arg1Of mutated,to
R12164 T16788 T16786 arg2Of alanine,to
R12165 T16788 T16787 arg1Of alanine,an
R12166 T16790 T16791 arg1Of along,with
R12167 T16797 T16791 arg2Of reporter,with
R12168 T16797 T16792 arg1Of reporter,the
R12169 T16797 T16793 arg1Of reporter,pGLmP-539
R12170 T16797 T16794 arg1Of reporter,murine
R12171 T16797 T16795 arg1Of reporter,SerpinB2
R12172 T16797 T16796 arg1Of reporter,luciferase
R12173 T16797 T16798 arg1Of reporter,in
R12174 T16800 T16798 arg2Of MEFs,in
R12175 T16800 T16799 arg1Of MEFs,Cebpb−/−
R12176 T16801 T16802 arg1Of Re-expression,of
R12177 T16801 T16805 arg1Of Re-expression,in
R12178 T16801 T16809 arg1Of Re-expression,stimulated
R12179 T16804 T16802 arg2Of C/EBP-β,of
R12180 T16804 T16803 arg1Of C/EBP-β,wild-type
R12181 T16807 T16805 arg2Of MEFs,in
R12182 T16807 T16806 arg1Of MEFs,Cebpb−/−
R12183 T16809 T16808 arg1Of stimulated,significantly
R12184 T16809 T16829 arg1Of stimulated,","
R12185 T16809 T16830 modOf stimulated,confirming
R12186 T16814 T16809 arg2Of expression,stimulated
R12187 T16814 T16810 arg1Of expression,SerpinB2
R12188 T16814 T16811 arg1Of expression,luciferase
R12189 T16814 T16812 arg1Of expression,reporter
R12190 T16814 T16813 arg1Of expression,gene
R12191 T16814 T16815 arg1Of expression,in
R12192 T16814 T16820 arg1Of expression,by
R12193 T16817 T16815 arg2Of presence,in
R12194 T16817 T16816 arg1Of presence,the
R12195 T16817 T16818 arg1Of presence,of
R12196 T16819 T16818 arg2Of LPS,of
R12197 T16822 T16820 arg2Of fold,by
R12198 T16822 T16821 arg1Of fold,∼3
R12199 T16822 T16823 arg1Of fold,(
R12200 T16825 T16823 arg2Of 8C,(
R12201 T16825 T16824 arg1Of 8C,Fig.
R12202 T16825 T16826 arg1Of 8C,","
R12203 T16827 T16826 arg2Of left,","
R12204 T16828 T16823 arg3Of ),(
R12205 T16832 T16830 arg2Of importance,confirming
R12206 T16832 T16831 arg1Of importance,the
R12207 T16832 T16833 arg1Of importance,of
R12208 T16832 T16835 arg1Of importance,to
R12209 T16834 T16833 arg2Of C/EBP-β,of
R12210 T16839 T16835 arg2Of transcription,to
R12211 T16839 T16836 arg1Of transcription,LPS-induced
R12212 T16839 T16837 arg1Of transcription,SerpinB2
R12213 T16839 T16838 arg1Of transcription,gene
R12214 T16840 T16841 arg1Of Expression,of
R12215 T16840 T16852 arg1Of Expression,did
R12216 T16840 T16855 arg1Of Expression,increase
R12217 T16845 T16841 arg2Of mutant,of
R12218 T16845 T16842 arg1Of mutant,the
R12219 T16845 T16843 arg1Of mutant,C/EBP-β
R12220 T16845 T16844 arg1Of mutant,phospho-acceptor
R12221 T16845 T16846 arg1Of mutant,","
R12222 T16847 T16846 arg2Of C/EBPβT217A,","
R12223 T16851 T16849 arg2Of MEFs,in
R12224 T16851 T16850 arg1Of MEFs,Cebpb−/−
R12225 T16855 T16848 arg1Of increase,","
R12226 T16855 T16849 arg1Of increase,in
R12227 T16855 T16852 arg2Of increase,did
R12228 T16855 T16853 arg1Of increase,not
R12229 T16855 T16854 arg1Of increase,significantly
R12230 T16855 T16870 arg1Of increase,;
R12231 T16855 T16871 modOf increase,confirming
R12232 T16858 T16855 arg2Of activity,increase
R12233 T16858 T16856 arg1Of activity,SerpinB2
R12234 T16858 T16857 arg1Of activity,promoter
R12235 T16858 T16859 arg1Of activity,above
R12236 T16858 T16864 arg1Of activity,(
R12237 T16860 T16859 arg2Of that,above
R12238 T16860 T16861 arg1Of that,of
R12239 T16863 T16861 arg2Of C/EBP-β,of
R12240 T16863 T16862 arg1Of C/EBP-β,wild-type
R12241 T16866 T16864 arg2Of 8C,(
R12242 T16866 T16865 arg1Of 8C,Fig.
R12243 T16866 T16867 arg1Of 8C,","
R12244 T16868 T16867 arg2Of right,","
R12245 T16869 T16864 arg3Of ),(
R12246 T16873 T16874 arg1Of phosphorylation,of
R12247 T16873 T16876 arg1Of phosphorylation,at
R12248 T16873 T16878 arg1Of phosphorylation,is
R12249 T16875 T16874 arg2Of C/EBP-β,of
R12250 T16877 T16876 arg2Of T217,at
R12251 T16878 T16871 arg2Of is,confirming
R12252 T16878 T16872 arg1Of is,that
R12253 T16878 T16879 arg1Of is,not
R12254 T16882 T16878 arg2Of factor,is
R12255 T16882 T16880 arg1Of factor,a
R12256 T16882 T16881 arg1Of factor,major
R12257 T16882 T16883 arg1Of factor,in
R12258 T16885 T16883 arg2Of regulation,in
R12259 T16885 T16884 arg1Of regulation,the
R12260 T16885 T16886 arg1Of regulation,of
R12261 T16885 T16890 arg1Of regulation,in
R12262 T16889 T16886 arg2Of activity,of
R12263 T16889 T16887 arg1Of activity,SerpinB2
R12264 T16889 T16888 arg1Of activity,promoter
R12265 T16890 T16892 arg1Of in,to
R12266 T16891 T16890 arg2Of response,in
R12267 T16893 T16890 arg3Of LPS,in

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16626 806-814 Protein denotes SerpinB2
T16625 761-766 Protein denotes Cebpb
T16624 745-756 Protein denotes C/EBPβT217A
T16623 712-743 Protein denotes C/EBP-β phospho-acceptor mutant
T16622 665-673 Protein denotes SerpinB2
T16621 642-649 Protein denotes C/EBP-β
T16620 517-545 Protein denotes SerpinB2 luciferase reporter
T16619 478-483 Protein denotes Cebpb
T16618 467-474 Protein denotes C/EBP-β
T16617 425-430 Protein denotes Cebpb
T16616 393-421 Protein denotes SerpinB2 luciferase reporter
T16615 251-283 Protein denotes C/EBP-β phospho-acceptor mutants
T16614 180-188 Protein denotes SerpinB2
T16613 109-116 Protein denotes C/EBP-β
T16612 19-26 Protein denotes C/EBP-β
T16629 977-985 Protein denotes SerpinB2
T16628 918-925 Protein denotes C/EBP-β
T16627 857-864 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17214 526-536 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T17213 402-412 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T17204 977-985 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T17203 806-814 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T17202 665-673 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T17201 517-525 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T17200 393-401 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T17199 180-188 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T17197 761-766 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T17196 478-483 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T17195 425-430 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T17190 918-925 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T17189 857-864 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T17188 712-719 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T17187 642-649 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T17186 467-474 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T17185 251-258 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T17184 109-116 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T17183 19-26 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-BP

Id Subject Object Predicate Lexical cue
T16666 1007-1022 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS
T16664 995-1015 http://purl.obolibrary.org/obo/GO_0014823 denotes activity in response
T16662 963-973 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T16659 679-692 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T16657 546-561 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T16656 62-77 http://purl.obolibrary.org/obo/GO_2000144 denotes transactivation
T16653 899-914 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T16652 117-132 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T16651 0-15 http://purl.obolibrary.org/obo/GO_0016310 denotes Phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T16496 694-1023 Sentence denotes Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS.
T16495 440-693 Sentence denotes Re-expression of wild-type C/EBP-β in Cebpb−/− MEFs significantly stimulated SerpinB2 luciferase reporter gene expression in the presence of LPS by ∼3 fold (Fig. 8C, left), confirming the importance of C/EBP-β to LPS-induced SerpinB2 gene transcription.
T16494 94-439 Sentence denotes To investigate C/EBP-β phosphorylation sites that may be important for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B), we co-expressed several C/EBP-β phospho-acceptor mutants in which the critical threonine or serine residue was mutated to an alanine, along with the pGLmP-539 murine SerpinB2 luciferase reporter in Cebpb−/− MEFs.
T16493 0-93 Sentence denotes Phosphorylation of C/EBP-β is well recognized to modulate its transactivation potential [63].
T233 0-93 Sentence denotes Phosphorylation of C/EBP-β is well recognized to modulate its transactivation potential [63].
T234 94-439 Sentence denotes To investigate C/EBP-β phosphorylation sites that may be important for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B), we co-expressed several C/EBP-β phospho-acceptor mutants in which the critical threonine or serine residue was mutated to an alanine, along with the pGLmP-539 murine SerpinB2 luciferase reporter in Cebpb−/− MEFs.
T235 440-693 Sentence denotes Re-expression of wild-type C/EBP-β in Cebpb−/− MEFs significantly stimulated SerpinB2 luciferase reporter gene expression in the presence of LPS by ∼3 fold (Fig. 8C, left), confirming the importance of C/EBP-β to LPS-induced SerpinB2 gene transcription.
T236 694-1023 Sentence denotes Expression of the C/EBP-β phospho-acceptor mutant, C/EBPβT217A, in Cebpb−/− MEFs did not significantly increase SerpinB2 promoter activity above that of wild-type C/EBP-β (Fig. 8C, right); confirming that phosphorylation of C/EBP-β at T217 is not a major factor in the regulation of SerpinB2 promoter activity in response to LPS.

simple1

Id Subject Object Predicate Lexical cue
T16703 977-985 Protein denotes SerpinB2
T16702 918-925 Protein denotes C/EBP-β
T16701 857-864 Protein denotes C/EBP-β
T16700 806-814 Protein denotes SerpinB2
T16699 761-766 Protein denotes Cebpb
T16698 745-756 Protein denotes C/EBPβT217A
T16697 712-743 Protein denotes C/EBP-β phospho-acceptor mutant
T16696 665-673 Protein denotes SerpinB2
T16695 642-649 Protein denotes C/EBP-β
T16694 517-545 Protein denotes SerpinB2 luciferase reporter
T16693 478-483 Protein denotes Cebpb
T16692 467-474 Protein denotes C/EBP-β
T16691 425-430 Protein denotes Cebpb
T16690 393-421 Protein denotes SerpinB2 luciferase reporter
T16689 251-283 Protein denotes C/EBP-β phospho-acceptor mutants
T16688 180-188 Protein denotes SerpinB2
T16687 109-116 Protein denotes C/EBP-β
T16686 19-26 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17111 393-421 Protein denotes SerpinB2 luciferase reporter
T17110 251-283 Protein denotes C/EBP-β phospho-acceptor mutants
T17109 180-188 Protein denotes SerpinB2
T17108 109-116 Protein denotes C/EBP-β
T17107 19-26 Protein denotes C/EBP-β
T17162 1007-1015 Regulation denotes response
T17161 899-914 Phosphorylation denotes phosphorylation
T17160 963-973 Regulation denotes regulation
T17159 797-805 Positive_regulation denotes increase
T17158 694-704 Gene_expression denotes Expression
T17157 506-516 Positive_regulation denotes stimulated
T17156 679-692 Transcription denotes transcription
T17155 551-561 Gene_expression denotes expression
T17154 653-664 Positive_regulation denotes LPS-induced
T17153 628-638 Positive_regulation denotes importance
T17152 440-453 Gene_expression denotes Re-expression
T17151 165-179 Positive_regulation denotes LPS-stimulated
T17150 151-160 Positive_regulation denotes important
T17149 230-242 Gene_expression denotes co-expressed
T17148 0-15 Phosphorylation denotes Phosphorylation
T17124 977-985 Protein denotes SerpinB2
T17123 918-925 Protein denotes C/EBP-β
T17122 857-864 Protein denotes C/EBP-β
T17121 806-814 Protein denotes SerpinB2
T17120 761-766 Protein denotes Cebpb
T17119 745-756 Protein denotes C/EBPβT217A
T17118 712-743 Protein denotes C/EBP-β phospho-acceptor mutant
T17117 467-474 Protein denotes C/EBP-β
T17116 665-673 Protein denotes SerpinB2
T17115 642-649 Protein denotes C/EBP-β
T17114 517-545 Protein denotes SerpinB2 luciferase reporter
T17113 478-483 Protein denotes Cebpb
T17112 425-430 Protein denotes Cebpb
R12448 T17107 T17148 themeOf C/EBP-β,Phosphorylation
R12449 T17109 T17150 themeOf SerpinB2,important
R12450 T17109 T17151 themeOf SerpinB2,LPS-stimulated
R12451 T17110 T17149 themeOf C/EBP-β phospho-acceptor mutants,co-expressed
R12452 T17113 T17152 themeOf Cebpb,Re-expression
R12453 T17114 T17155 themeOf SerpinB2 luciferase reporter,expression
R12454 T17115 T17153 themeOf C/EBP-β,importance
R12455 T17116 T17154 themeOf SerpinB2,LPS-induced
R12456 T17116 T17156 themeOf SerpinB2,transcription
R12457 T17117 T17152 themeOf C/EBP-β,Re-expression
R12458 T17118 T17158 themeOf C/EBP-β phospho-acceptor mutant,Expression
R12459 T17119 T17158 themeOf C/EBPβT217A,Expression
R12460 T17120 T17158 themeOf Cebpb,Expression
R12461 T17121 T17159 themeOf SerpinB2,increase
R12462 T17123 T17161 themeOf C/EBP-β,phosphorylation
R12463 T17124 T17160 themeOf SerpinB2,regulation
R12464 T17124 T17162 themeOf SerpinB2,response
R12483 T17151 T17150 themeOf LPS-stimulated,important
R12484 T17155 T17157 themeOf expression,stimulated
R12485 T17156 T17154 themeOf transcription,LPS-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T17360 977-985 Protein denotes SerpinB2
T17359 918-925 Protein denotes C/EBP-β
T17358 857-864 Protein denotes C/EBP-β
T17357 806-814 Protein denotes SerpinB2
T17356 761-766 Protein denotes Cebpb
T17355 745-756 Protein denotes C/EBPβT217A
T17354 712-743 Protein denotes C/EBP-β phospho-acceptor mutant
T17353 467-474 Protein denotes C/EBP-β
T17352 665-673 Protein denotes SerpinB2
T17351 642-649 Protein denotes C/EBP-β
T17350 517-545 Protein denotes SerpinB2 luciferase reporter
T17349 478-483 Protein denotes Cebpb
T17348 425-430 Protein denotes Cebpb
T17347 393-421 Protein denotes SerpinB2 luciferase reporter
T17346 251-283 Protein denotes C/EBP-β phospho-acceptor mutants
T17345 180-188 Protein denotes SerpinB2
T17344 109-116 Protein denotes C/EBP-β
T17343 19-26 Protein denotes C/EBP-β
T17386 679-692 Transcription denotes transcription
T17385 506-516 Positive_regulation denotes stimulated
T17384 440-453 Gene_expression denotes Re-expression
T17383 230-242 Gene_expression denotes co-expressed
T17382 0-15 Phosphorylation denotes Phosphorylation
T17392 899-914 Phosphorylation denotes phosphorylation
T17391 963-973 Regulation denotes regulation
T17390 694-704 Gene_expression denotes Expression
T17389 797-805 Positive_regulation denotes increase
T17388 551-561 Gene_expression denotes expression
T17387 653-664 Positive_regulation denotes LPS-induced
R12555 T17343 T17382 themeOf C/EBP-β,Phosphorylation
R12556 T17346 T17383 themeOf C/EBP-β phospho-acceptor mutants,co-expressed
R12557 T17349 T17384 themeOf Cebpb,Re-expression
R12558 T17350 T17388 themeOf SerpinB2 luciferase reporter,expression
R12559 T17352 T17386 themeOf SerpinB2,transcription
R12560 T17353 T17384 themeOf C/EBP-β,Re-expression
R12561 T17354 T17390 themeOf C/EBP-β phospho-acceptor mutant,Expression
R12562 T17355 T17390 themeOf C/EBPβT217A,Expression
R12563 T17356 T17390 themeOf Cebpb,Expression
R12564 T17359 T17392 themeOf C/EBP-β,phosphorylation
R12565 T17360 T17391 themeOf SerpinB2,regulation
R12582 T17384 T17385 causeOf Re-expression,stimulated
R12583 T17384 T17385 causeOf Re-expression,stimulated
R12584 T17386 T17387 themeOf transcription,LPS-induced
R12585 T17388 T17385 themeOf expression,stimulated
R12586 T17388 T17385 themeOf expression,stimulated
R12587 T17390 T17389 themeOf Expression,increase
R12588 T17390 T17389 themeOf Expression,increase
R12589 T17390 T17389 themeOf Expression,increase

DLUT931

Id Subject Object Predicate Lexical cue
T17274 949-955 Regulation denotes factor
T17273 899-914 Phosphorylation denotes phosphorylation
T17272 797-805 Positive_regulation denotes increase
T17271 694-704 Gene_expression denotes Expression
T17270 653-664 Positive_regulation denotes LPS-induced
T17269 628-638 Positive_regulation denotes importance
T17268 506-516 Positive_regulation denotes stimulated
T17267 679-692 Transcription denotes transcription
T17266 551-561 Gene_expression denotes expression
T17265 440-453 Gene_expression denotes Re-expression
T17264 338-345 Negative_regulation denotes mutated
T17263 230-242 Gene_expression denotes co-expressed
T17262 117-132 Phosphorylation denotes phosphorylation
T17261 49-57 Regulation denotes modulate
T17260 0-15 Phosphorylation denotes Phosphorylation
T17236 977-985 Protein denotes SerpinB2
T17235 918-925 Protein denotes C/EBP-β
T17234 857-864 Protein denotes C/EBP-β
T17233 806-814 Protein denotes SerpinB2
T17232 761-766 Protein denotes Cebpb
T17231 745-756 Protein denotes C/EBPβT217A
T17230 712-743 Protein denotes C/EBP-β phospho-acceptor mutant
T17229 467-474 Protein denotes C/EBP-β
T17228 665-673 Protein denotes SerpinB2
T17227 642-649 Protein denotes C/EBP-β
T17226 517-545 Protein denotes SerpinB2 luciferase reporter
T17225 478-483 Protein denotes Cebpb
T17224 425-430 Protein denotes Cebpb
T17223 393-421 Protein denotes SerpinB2 luciferase reporter
T17222 251-283 Protein denotes C/EBP-β phospho-acceptor mutants
T17221 180-188 Protein denotes SerpinB2
T17220 109-116 Protein denotes C/EBP-β
T17219 19-26 Protein denotes C/EBP-β
R12497 T17219 T17260 themeOf C/EBP-β,Phosphorylation
R12498 T17220 T17262 themeOf C/EBP-β,phosphorylation
R12499 T17222 T17263 themeOf C/EBP-β phospho-acceptor mutants,co-expressed
R12500 T17222 T17264 themeOf C/EBP-β phospho-acceptor mutants,mutated
R12529 T17260 T17261 themeOf Phosphorylation,modulate
R12502 T17226 T17266 themeOf SerpinB2 luciferase reporter,expression
R12503 T17227 T17269 causeOf C/EBP-β,importance
R12504 T17228 T17267 themeOf SerpinB2,transcription
R12505 T17229 T17265 themeOf C/EBP-β,Re-expression
R12506 T17230 T17271 themeOf C/EBP-β phospho-acceptor mutant,Expression
R12530 T17265 T17268 causeOf Re-expression,stimulated
R12531 T17266 T17268 themeOf expression,stimulated
R12532 T17267 T17269 themeOf transcription,importance
R12533 T17267 T17270 themeOf transcription,LPS-induced
R12534 T17271 T17272 themeOf Expression,increase
R12508 T17235 T17273 themeOf C/EBP-β,phosphorylation
R12536 T17273 T17274 themeOf phosphorylation,factor
R12501 T17223 T17264 themeOf SerpinB2 luciferase reporter,mutated
R12507 T17231 T17271 themeOf C/EBPβT217A,Expression
R12535 T17271 T17272 themeOf Expression,increase

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17649 440-484 Gene_expression denotes Re-expression of wild-type C/EBP-β in Cebpb−
T17648 694-744 Gene_expression denotes Expression of the C/EBP-β phospho-acceptor mutant,
T17647 161-225 Positive_regulation denotes for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B)
T17644 653-692 Transcription denotes LPS-induced SerpinB2 gene transcription
T17635 109-225 Phosphorylation denotes C/EBP-β phosphorylation sites that may be important for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B)
T17634 517-561 Gene_expression denotes SerpinB2 luciferase reporter gene expression
T17631 487-584 Positive_regulation denotes MEFs significantly stimulated SerpinB2 luciferase reporter gene expression in the presence of LPS
T17628 526-536 Protein denotes luciferase
T17627 180-206 Entity denotes SerpinB2 proximal promoter
T17626 806-823 Entity denotes SerpinB2 promoter
T17625 16-26 Protein denotes of C/EBP-β
T17624 761-767 Protein denotes Cebpb−
T17622 546-550 Protein denotes gene
T17621 977-985 Protein denotes SerpinB2
T17618 352-359 Entity denotes alanine
T17614 378-381 Protein denotes LmP
T17609 806-814 Protein denotes SerpinB2
T17604 109-225 Entity denotes C/EBP-β phosphorylation sites that may be important for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B)
T17603 705-744 Protein denotes of the C/EBP-β phospho-acceptor mutant,
T17602 1019-1022 Entity denotes LPS
T17601 319-325 Entity denotes serine
T17600 251-283 Protein denotes C/EBP-β phospho-acceptor mutants
T17599 745-767 Protein denotes C/EBPβT217A, in Cebpb−
T17597 180-188 Protein denotes SerpinB2
T17594 929-933 Entity denotes T217
T17593 665-678 Protein denotes SerpinB2 gene
T17592 372-438 Protein denotes the pGLmP-539 murine SerpinB2 luciferase reporter in Cebpb−/− MEFs
T17589 517-525 Protein denotes SerpinB2
T17588 597-600 Protein denotes Fig
T17585 653-664 Entity denotes LPS-induced
T17584 165-179 Entity denotes LPS-stimulated
T17579 306-333 Entity denotes threonine or serine residue
T17578 478-484 Protein denotes Cebpb−
T17574 454-474 Protein denotes of wild-type C/EBP-β
T17573 847-864 Protein denotes wild-type C/EBP-β
T17572 665-673 Protein denotes SerpinB2
T17571 915-925 Protein denotes of C/EBP-β
T17570 581-584 Entity denotes LPS
T17568 977-994 Entity denotes SerpinB2 promoter
T17567 866-869 Protein denotes Fig
T17565 770-774 Protein denotes MEFs
T17564 639-649 Protein denotes of C/EBP-β
T17563 109-116 Protein denotes C/EBP-β
T17559 306-315 Entity denotes threonine
T17554 487-491 Protein denotes MEFs
T17551 425-438 Protein denotes Cebpb−/− MEFs
R12677 T17554 T17631 causeOf MEFs,MEFs significantly stimulated SerpinB2 luciferase reporter gene expression in the presence of LPS
R12679 T17563 T17635 themeOf C/EBP-β,C/EBP-β phosphorylation sites that may be important for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B)
R12681 T17568 T17621 partOf SerpinB2 promoter,SerpinB2
R12682 T17574 T17649 themeOf of wild-type C/EBP-β,Re-expression of wild-type C/EBP-β in Cebpb−
R12685 T17584 T17647 causeOf LPS-stimulated,for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B)
R12687 T17593 T17644 themeOf SerpinB2 gene,LPS-induced SerpinB2 gene transcription
R12689 T17603 T17648 themeOf "of the C/EBP-β phospho-acceptor mutant,","Expression of the C/EBP-β phospho-acceptor mutant,"
R12699 T17622 T17634 themeOf gene,SerpinB2 luciferase reporter gene expression
R12701 T17626 T17609 partOf SerpinB2 promoter,SerpinB2
R12702 T17627 T17597 partOf SerpinB2 proximal promoter,SerpinB2
R12703 T17634 T17631 themeOf SerpinB2 luciferase reporter gene expression,MEFs significantly stimulated SerpinB2 luciferase reporter gene expression in the presence of LPS

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17447 797-805 Positive_regulation denotes increase
T17446 797-805 Positive_regulation denotes increase
T17445 797-805 Positive_regulation denotes increase
T17444 694-704 Gene_expression denotes Expression
T17443 694-704 Gene_expression denotes Expression
T17442 694-704 Gene_expression denotes Expression
T17441 977-994 Protein denotes SerpinB2 promoter
T17440 918-925 Protein denotes C/EBP-β
T17439 806-823 Protein denotes SerpinB2 promoter
T17438 761-774 Protein denotes Cebpb−/− MEFs
T17437 745-756 Protein denotes C/EBPβT217A
T17436 712-743 Protein denotes C/EBP-β phospho-acceptor mutant
T17435 506-516 Positive_regulation denotes stimulated
T17434 506-516 Positive_regulation denotes stimulated
T17433 628-638 Positive_regulation denotes importance
T17432 551-561 Gene_expression denotes expression
T17431 440-453 Gene_expression denotes Re-expression
T17430 440-453 Gene_expression denotes Re-expression
T17429 642-649 Protein denotes C/EBP-β
T17428 517-536 Protein denotes SerpinB2 luciferase
T17427 478-491 Protein denotes Cebpb−/− MEFs
T17426 467-474 Protein denotes C/EBP-β
T17425 230-242 Gene_expression denotes co-expressed
T17424 151-160 Positive_regulation denotes important
T17423 425-438 Protein denotes Cebpb−/− MEFs
T17422 393-421 Protein denotes SerpinB2 luciferase reporter
T17421 251-283 Protein denotes C/EBP-β phospho-acceptor mutants
T17420 180-206 Protein denotes SerpinB2 proximal promoter
T17419 109-138 Protein denotes C/EBP-β phosphorylation sites
T17418 49-57 Regulation denotes modulate
T17417 0-15 Phosphorylation denotes Phosphorylation
T17416 19-26 Protein denotes C/EBP-β
T17449 963-973 Regulation denotes regulation
T17448 899-914 Phosphorylation denotes phosphorylation
R12600 T17416 T17417 themeOf C/EBP-β,Phosphorylation
R12601 T17417 T17418 themeOf Phosphorylation,modulate
R12602 T17419 T17424 causeOf C/EBP-β phosphorylation sites,important
R12603 T17420 T17424 themeOf SerpinB2 proximal promoter,important
R12604 T17421 T17425 themeOf C/EBP-β phospho-acceptor mutants,co-expressed
R12605 T17426 T17430 themeOf C/EBP-β,Re-expression
R12606 T17427 T17431 themeOf Cebpb−/− MEFs,Re-expression
R12607 T17428 T17432 themeOf SerpinB2 luciferase,expression
R12608 T17429 T17433 themeOf C/EBP-β,importance
R12609 T17430 T17434 causeOf Re-expression,stimulated
R12610 T17431 T17435 causeOf Re-expression,stimulated
R12611 T17432 T17434 themeOf expression,stimulated
R12612 T17432 T17435 themeOf expression,stimulated
R12613 T17436 T17442 themeOf C/EBP-β phospho-acceptor mutant,Expression
R12614 T17437 T17443 themeOf C/EBPβT217A,Expression
R12615 T17438 T17444 themeOf Cebpb−/− MEFs,Expression
R12616 T17440 T17448 themeOf C/EBP-β,phosphorylation
R12617 T17441 T17449 themeOf SerpinB2 promoter,regulation
R12618 T17442 T17445 themeOf Expression,increase
R12619 T17443 T17446 themeOf Expression,increase
R12620 T17444 T17447 themeOf Expression,increase
R12621 T17448 T17449 causeOf phosphorylation,regulation

testone

Id Subject Object Predicate Lexical cue
T16358 899-914 Phosphorylation denotes phosphorylation
T16357 797-805 Positive_regulation denotes increase
T16356 694-704 Gene_expression denotes Expression
T16355 679-692 Transcription denotes transcription
T16354 657-664 Positive_regulation denotes induced
T16353 569-577 Positive_regulation denotes presence
T16352 551-561 Gene_expression denotes expression
T16351 506-516 Positive_regulation denotes stimulated
T16350 440-453 Gene_expression denotes Re-expression
T16349 230-242 Gene_expression denotes co-expressed
T16348 117-132 Phosphorylation denotes phosphorylation
T16347 35-45 Binding denotes recognized
T16346 0-15 Phosphorylation denotes Phosphorylation
T16324 977-985 Protein denotes SerpinB2
T16323 918-925 Protein denotes C/EBP-β
T16322 857-864 Protein denotes C/EBP-β
T16321 806-814 Protein denotes SerpinB2
T16320 761-766 Protein denotes Cebpb
T16319 745-756 Protein denotes C/EBPβT217A
T16318 712-743 Protein denotes C/EBP-β phospho-acceptor mutant
T16317 665-673 Protein denotes SerpinB2
T16316 642-649 Protein denotes C/EBP-β
T16315 517-545 Protein denotes SerpinB2 luciferase reporter
T16314 478-483 Protein denotes Cebpb
T16313 467-474 Protein denotes C/EBP-β
T16312 425-430 Protein denotes Cebpb
T16311 393-421 Protein denotes SerpinB2 luciferase reporter
T16310 251-283 Protein denotes C/EBP-β phospho-acceptor mutants
T16309 180-188 Protein denotes SerpinB2
T16308 109-116 Protein denotes C/EBP-β
T16307 19-26 Protein denotes C/EBP-β
R11950 T16307 T16347 themeOf C/EBP-β,recognized
R11951 T16307 T16346 themeOf C/EBP-β,Phosphorylation
R11952 T16308 T16348 themeOf C/EBP-β,phosphorylation
R11953 T16310 T16349 themeOf C/EBP-β phospho-acceptor mutants,co-expressed
R11954 T16311 T16349 themeOf SerpinB2 luciferase reporter,co-expressed
R11955 T16313 T16350 themeOf C/EBP-β,Re-expression
R11956 T16315 T16352 themeOf SerpinB2 luciferase reporter,expression
R11957 T16317 T16355 themeOf SerpinB2,transcription
R11958 T16318 T16356 themeOf C/EBP-β phospho-acceptor mutant,Expression
R11959 T16319 T16356 themeOf C/EBPβT217A,Expression
R11960 T16323 T16358 themeOf C/EBP-β,phosphorylation
R11975 T16350 T16351 causeOf Re-expression,stimulated
R11976 T16352 T16351 themeOf expression,stimulated
R11977 T16355 T16354 themeOf transcription,induced

test3

Id Subject Object Predicate Lexical cue
T16454 977-985 Protein denotes SerpinB2
T16453 963-973 Regulation denotes regulation
T16452 918-925 Protein denotes C/EBP-β
T16451 899-914 Phosphorylation denotes phosphorylation
T16450 857-864 Protein denotes C/EBP-β
T16449 806-814 Protein denotes SerpinB2
T16448 797-805 Positive_regulation denotes increase
T16447 761-766 Protein denotes Cebpb
T16446 745-756 Protein denotes C/EBPβT217A
T16445 712-743 Protein denotes C/EBP-β phospho-acceptor mutant
T16444 694-704 Gene_expression denotes Expression
T16443 679-692 Transcription denotes transcription
T16442 665-673 Protein denotes SerpinB2
T16441 657-664 Positive_regulation denotes induced
T16440 642-649 Protein denotes C/EBP-β
T16439 551-561 Gene_expression denotes expression
T16438 517-545 Protein denotes SerpinB2 luciferase reporter
T16437 506-516 Positive_regulation denotes stimulated
T16436 478-483 Protein denotes Cebpb
T16435 467-474 Protein denotes C/EBP-β
T16434 443-453 Gene_expression denotes expression
T16433 442-443 Gene_expression denotes -
T16432 440-442 Positive_regulation denotes Re
T16431 425-430 Protein denotes Cebpb
T16430 393-421 Protein denotes SerpinB2 luciferase reporter
T16429 251-283 Protein denotes C/EBP-β phospho-acceptor mutants
T16428 233-242 Gene_expression denotes expressed
T16427 180-188 Protein denotes SerpinB2
T16426 117-132 Phosphorylation denotes phosphorylation
T16425 109-116 Protein denotes C/EBP-β
T16424 35-45 Binding denotes recognized
T16423 19-26 Protein denotes C/EBP-β
T16422 0-15 Phosphorylation denotes Phosphorylation
T16396 977-985 Protein denotes SerpinB2
T16395 918-925 Protein denotes C/EBP-β
T16394 857-864 Protein denotes C/EBP-β
T16393 806-814 Protein denotes SerpinB2
T16392 761-766 Protein denotes Cebpb
T16391 745-756 Protein denotes C/EBPβT217A
T16390 712-743 Protein denotes C/EBP-β phospho-acceptor mutant
T16389 665-673 Protein denotes SerpinB2
T16388 642-649 Protein denotes C/EBP-β
T16387 517-545 Protein denotes SerpinB2 luciferase reporter
T16386 478-483 Protein denotes Cebpb
T16385 467-474 Protein denotes C/EBP-β
T16384 425-430 Protein denotes Cebpb
T16383 393-421 Protein denotes SerpinB2 luciferase reporter
T16382 251-283 Protein denotes C/EBP-β phospho-acceptor mutants
T16381 180-188 Protein denotes SerpinB2
T16380 109-116 Protein denotes C/EBP-β
T16379 19-26 Protein denotes C/EBP-β
R11985 T16423 T16422 themeOf C/EBP-β,Phosphorylation
R11986 T16425 T16426 themeOf C/EBP-β,phosphorylation
R11987 T16429 T16428 themeOf C/EBP-β phospho-acceptor mutants,expressed
R11988 T16435 T16434 themeOf C/EBP-β,expression
R11989 T16438 T16439 themeOf SerpinB2 luciferase reporter,expression
R11990 T16439 T16437 themeOf expression,stimulated
R11991 T16440 T16441 causeOf C/EBP-β,induced
R11992 T16442 T16443 themeOf SerpinB2,transcription
R11993 T16443 T16441 themeOf transcription,induced
R11994 T16445 T16444 themeOf C/EBP-β phospho-acceptor mutant,Expression
R11995 T16446 T16444 themeOf C/EBPβT217A,Expression
R11996 T16452 T16451 themeOf C/EBP-β,phosphorylation