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PMC:3589482 / 367-550 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T843 176-182 NN denotes period
T842 174-175 DT denotes a
T841 169-173 IN denotes over
T840 159-168 JJ denotes 1000-fold
T839 158-159 CD denotes ∼
T838 155-157 IN denotes by
T837 153-154 -RRB- denotes )
T836 149-153 CD denotes TLR4
T835 148-149 -LRB- denotes (
T834 146-147 CD denotes 4
T833 137-145 NN denotes receptor
T832 127-136 JJ denotes toll-like
T831 123-126 DT denotes the
T830 119-122 IN denotes via
T829 108-118 NN denotes expression
T828 99-107 NNP denotes SerpinB2
T827 92-98 VB denotes induce
T826 88-91 MD denotes can
T825 86-87 , denotes ,
T824 77-86 NN denotes endotoxin
T823 67-76 JJ denotes bacterial
T822 60-66 JJ denotes potent
T821 58-59 DT denotes a
T820 56-57 , denotes ,
T819 55-56 -RRB- denotes )
T818 52-55 NNP denotes LPS
T817 51-52 -LRB- denotes (
T816 32-50 NNP denotes Lipopolysaccharide
T815 30-31 . denotes .
T814 20-30 NNS denotes activators
T813 8-19 NN denotes plasminogen
T812 5-7 IN denotes of
R400 T813 T814 compound plasminogen,activators
R401 T814 T812 pobj activators,of
R403 T816 T827 npadvmod Lipopolysaccharide,induce
R404 T817 T818 punct (,LPS
R405 T818 T816 appos LPS,Lipopolysaccharide
R406 T819 T816 punct ),Lipopolysaccharide
R407 T820 T816 punct ",",Lipopolysaccharide
R408 T821 T824 det a,endotoxin
R409 T822 T824 amod potent,endotoxin
R410 T823 T824 amod bacterial,endotoxin
R411 T824 T816 appos endotoxin,Lipopolysaccharide
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R425 T838 T827 prep by,induce
R426 T839 T838 pobj ∼,by
R427 T840 T827 advcl 1000-fold,induce
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T305 176-182 NN denotes period
T304 174-175 DT denotes a
T303 169-173 IN denotes over
T302 158-168 RB denotes ∼1000-fold
T301 155-157 IN denotes by
T300 153-154 -RRB- denotes )
T299 149-153 NN denotes TLR4
T298 148-149 -LRB- denotes (
T297 146-147 CD denotes 4
T296 137-145 NN denotes receptor
T295 127-136 JJ denotes toll-like
T294 123-126 DT denotes the
T293 119-122 IN denotes via
T292 108-118 NN denotes expression
T291 99-107 NN denotes SerpinB2
T290 92-98 VB denotes induce
T289 88-91 MD denotes can
T288 86-87 -COMMA- denotes ,
T287 77-86 NN denotes endotoxin
T286 67-76 JJ denotes bacterial
T285 60-66 JJ denotes potent
T284 58-59 DT denotes a
T283 56-57 -COMMA- denotes ,
T282 55-56 -RRB- denotes )
T281 52-55 NN denotes LPS
T280 51-52 -LRB- denotes (
T279 32-50 NN denotes Lipopolysaccharide
T278 20-30 NN denotes activators
T277 8-19 NN denotes plasminogen
T276 5-7 IN denotes of
R88 T278 T276 arg2Of activators,of
R89 T278 T277 arg1Of activators,plasminogen
R90 T279 T280 arg1Of Lipopolysaccharide,(
R91 T279 T283 arg1Of Lipopolysaccharide,","
R92 T279 T289 arg1Of Lipopolysaccharide,can
R93 T279 T290 arg1Of Lipopolysaccharide,induce
R94 T281 T280 arg2Of LPS,(
R95 T282 T280 arg3Of ),(
R96 T287 T283 arg2Of endotoxin,","
R97 T287 T284 arg1Of endotoxin,a
R98 T287 T285 arg1Of endotoxin,potent
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R103 T290 T301 arg1Of induce,by
R104 T290 T303 arg1Of induce,over
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T162 99-107 Protein denotes SerpinB2
T163 127-147 Protein denotes toll-like receptor 4
T164 149-153 Protein denotes TLR4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 149-153 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 99-107 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T179 8-30 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activators

simple1

Id Subject Object Predicate Lexical cue
T215 99-107 Protein denotes SerpinB2
T216 127-147 Protein denotes toll-like receptor 4
T217 149-153 Protein denotes TLR4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T514 92-98 Positive_regulation denotes induce
T513 108-118 Gene_expression denotes expression
T498 149-153 Protein denotes TLR4
T496 99-107 Protein denotes SerpinB2
T497 127-147 Protein denotes toll-like receptor 4
R308 T513 T514 themeOf expression,induce
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T606 99-107 Protein denotes SerpinB2
T607 127-147 Protein denotes toll-like receptor 4
T608 149-153 Protein denotes TLR4
T623 108-118 Gene_expression denotes expression
T624 92-98 Positive_regulation denotes induce
R718 T606 T623 themeOf SerpinB2,expression
R720 T607 T624 causeOf toll-like receptor 4,induce
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T572 99-107 Protein denotes SerpinB2
T573 127-147 Protein denotes toll-like receptor 4
T574 149-153 Protein denotes TLR4
T590 108-118 Gene_expression denotes expression
T591 92-98 Positive_regulation denotes induce
R685 T572 T590 themeOf SerpinB2,expression
R686 T573 T591 causeOf toll-like receptor 4,induce
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T759 99-118 Gene_expression denotes SerpinB2 expression
T750 52-55 Entity denotes LPS
T748 99-107 Protein denotes SerpinB2
T709 32-57 Entity denotes Lipopolysaccharide (LPS),
T711 77-86 Entity denotes endotoxin
T714 123-154 Protein denotes the toll-like receptor 4 (TLR4)
T715 149-153 Protein denotes TLR4
T733 5-30 Entity denotes of plasminogen activators
T745 8-19 Protein denotes plasminogen
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T647 92-98 Positive_regulation denotes induce
T646 108-118 Gene_expression denotes expression
T645 99-107 Protein denotes SerpinB2
T641 8-30 Protein denotes plasminogen activators
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce

testone

Id Subject Object Predicate Lexical cue
T40 108-118 Gene_expression denotes expression
T39 92-98 Positive_regulation denotes induce
T27 149-153 Protein denotes TLR4
T26 127-147 Protein denotes toll-like receptor 4
T25 99-107 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R8 T40 T39 themeOf expression,induce
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T78 149-153 Protein denotes TLR4
T77 127-147 Protein denotes toll-like receptor 4
T76 108-118 Gene_expression denotes expression
T75 99-107 Protein denotes SerpinB2
T74 92-98 Positive_regulation denotes induce
T56 149-153 Protein denotes TLR4
T55 127-147 Protein denotes toll-like receptor 4
T54 99-107 Protein denotes SerpinB2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4