PMC:3589482 / 36146-36412
Annnotations
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16165 | 265-266 | . | denotes | . |
T16164 | 262-265 | NNP | denotes | LPS |
T16163 | 259-261 | TO | denotes | to |
T16162 | 250-258 | NN | denotes | response |
T16161 | 247-249 | IN | denotes | in |
T16160 | 241-246 | NNS | denotes | cells |
T16159 | 238-240 | IN | denotes | in |
T16158 | 229-237 | NN | denotes | promoter |
T16157 | 220-228 | NNP | denotes | SerpinB2 |
T16156 | 216-219 | DT | denotes | the |
T16155 | 211-215 | IN | denotes | from |
T16154 | 197-210 | NN | denotes | transcription |
T16153 | 189-196 | VBG | denotes | driving |
T16152 | 185-188 | IN | denotes | for |
T16151 | 178-184 | NN | denotes | factor |
T16150 | 168-177 | JJ | denotes | essential |
T16149 | 165-167 | DT | denotes | an |
T16148 | 161-164 | VBD | denotes | was |
T16147 | 159-160 | NN | denotes | β |
T16146 | 158-159 | : | denotes | - |
T16145 | 153-158 | NNP | denotes | C/EBP |
T16144 | 145-152 | IN | denotes | whether |
T16143 | 142-144 | IN | denotes | of |
T16142 | 133-141 | NN | denotes | question |
T16141 | 129-132 | DT | denotes | the |
T16140 | 121-128 | VB | denotes | address |
T16139 | 118-120 | TO | denotes | to |
T16138 | 111-117 | VBD | denotes | wanted |
T16137 | 108-110 | PRP | denotes | we |
T16136 | 106-107 | , | denotes | , |
T16135 | 102-106 | NN | denotes | vivo |
T16134 | 99-101 | IN | denotes | in |
T16133 | 95-98 | CC | denotes | and |
T16132 | 89-94 | NN | denotes | vitro |
T16131 | 86-88 | IN | denotes | in |
T16130 | 81-85 | DT | denotes | both |
T16129 | 74-80 | NN | denotes | manner |
T16128 | 60-73 | JJ | denotes | LPS-inducible |
T16127 | 57-59 | DT | denotes | an |
T16126 | 54-56 | IN | denotes | in |
T16125 | 45-53 | NN | denotes | promoter |
T16124 | 36-44 | JJ | denotes | proximal |
T16123 | 27-35 | NNP | denotes | SerpinB2 |
T16122 | 23-26 | DT | denotes | the |
T16121 | 20-22 | TO | denotes | to |
T16120 | 14-19 | NNS | denotes | binds |
T16119 | 12-13 | NN | denotes | β |
T16118 | 11-12 | : | denotes | - |
T16117 | 6-11 | NNP | denotes | C/EBP |
T16116 | 0-5 | IN | denotes | Since |
R11818 | T16117 | T16119 | compound | C/EBP,β |
R11819 | T16118 | T16119 | punct | -,β |
R11820 | T16119 | T16120 | compound | β,binds |
R11821 | T16120 | T16116 | pobj | binds,Since |
R11823 | T16122 | T16125 | det | the,promoter |
R11824 | T16123 | T16125 | nmod | SerpinB2,promoter |
R11825 | T16124 | T16125 | amod | proximal,promoter |
R11826 | T16125 | T16121 | pobj | promoter,to |
R11827 | T16126 | T16125 | prep | in,promoter |
R11828 | T16127 | T16129 | det | an,manner |
R11829 | T16128 | T16129 | amod | LPS-inducible,manner |
R11830 | T16129 | T16126 | pobj | manner,in |
R11831 | T16130 | T16131 | preconj | both,in |
R11833 | T16132 | T16131 | pobj | vitro,in |
R11834 | T16133 | T16131 | cc | and,in |
R11835 | T16134 | T16131 | conj | in,in |
R11836 | T16135 | T16134 | pobj | vivo,in |
R11837 | T16136 | T16138 | punct | ",",wanted |
R11838 | T16137 | T16138 | nsubj | we,wanted |
R11839 | T16138 | T16138 | ROOT | wanted,wanted |
R11840 | T16139 | T16140 | aux | to,address |
R11841 | T16140 | T16138 | xcomp | address,wanted |
R11842 | T16141 | T16142 | det | the,question |
R11843 | T16142 | T16140 | dobj | question,address |
R11844 | T16143 | T16142 | prep | of,question |
R11845 | T16144 | T16148 | mark | whether,was |
R11846 | T16145 | T16147 | compound | C/EBP,β |
R11847 | T16146 | T16147 | punct | -,β |
R11848 | T16147 | T16148 | nsubj | β,was |
R11849 | T16148 | T16143 | pcomp | was,of |
R11850 | T16149 | T16151 | det | an,factor |
R11851 | T16150 | T16151 | amod | essential,factor |
R11852 | T16151 | T16148 | attr | factor,was |
R11853 | T16152 | T16151 | prep | for,factor |
R11854 | T16153 | T16152 | pcomp | driving,for |
R11855 | T16154 | T16153 | dobj | transcription,driving |
R11856 | T16155 | T16153 | prep | from,driving |
R11857 | T16156 | T16158 | det | the,promoter |
R11858 | T16157 | T16158 | compound | SerpinB2,promoter |
R11859 | T16158 | T16155 | pobj | promoter,from |
R11860 | T16159 | T16158 | prep | in,promoter |
R11861 | T16160 | T16159 | pobj | cells,in |
R11862 | T16161 | T16153 | prep | in,driving |
R11863 | T16162 | T16161 | pobj | response,in |
R11864 | T16163 | T16162 | prep | to,response |
R11865 | T16164 | T16163 | pobj | LPS,to |
R11866 | T16165 | T16138 | punct | .,wanted |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15841 | 262-265 | NN | denotes | LPS |
T15840 | 259-261 | TO | denotes | to |
T15839 | 250-258 | NN | denotes | response |
T15838 | 247-249 | IN | denotes | in |
T15837 | 241-246 | NN | denotes | cells |
T15836 | 238-240 | IN | denotes | in |
T15835 | 229-237 | NN | denotes | promoter |
T15834 | 220-228 | NN | denotes | SerpinB2 |
T15833 | 216-219 | DT | denotes | the |
T15832 | 211-215 | IN | denotes | from |
T15831 | 197-210 | NN | denotes | transcription |
T15830 | 189-196 | VB | denotes | driving |
T15829 | 185-188 | IN | denotes | for |
T15828 | 178-184 | NN | denotes | factor |
T15827 | 168-177 | JJ | denotes | essential |
T15826 | 165-167 | DT | denotes | an |
T15825 | 161-164 | VB | denotes | was |
T15824 | 153-160 | NN | denotes | C/EBP-β |
T15823 | 145-152 | IN | denotes | whether |
T15822 | 142-144 | IN | denotes | of |
T15821 | 133-141 | NN | denotes | question |
T15820 | 129-132 | DT | denotes | the |
T15819 | 121-128 | VB | denotes | address |
T15818 | 118-120 | TO | denotes | to |
T15817 | 111-117 | VB | denotes | wanted |
T15816 | 108-110 | PRP | denotes | we |
T15815 | 106-107 | -COMMA- | denotes | , |
T15814 | 102-106 | FW | denotes | vivo |
T15813 | 99-101 | FW | denotes | in |
T15812 | 95-98 | CC | denotes | and |
T15811 | 89-94 | FW | denotes | vitro |
T15810 | 86-88 | FW | denotes | in |
T15809 | 81-85 | CC | denotes | both |
T15808 | 74-80 | NN | denotes | manner |
T15807 | 60-73 | JJ | denotes | LPS-inducible |
T15806 | 57-59 | DT | denotes | an |
T15805 | 54-56 | IN | denotes | in |
T15804 | 45-53 | NN | denotes | promoter |
T15803 | 36-44 | JJ | denotes | proximal |
T15802 | 27-35 | NN | denotes | SerpinB2 |
T15801 | 23-26 | DT | denotes | the |
T15800 | 20-22 | TO | denotes | to |
T15799 | 14-19 | VB | denotes | binds |
T15798 | 6-13 | NN | denotes | C/EBP-β |
T15797 | 0-5 | IN | denotes | Since |
R11627 | T15798 | T15799 | arg1Of | C/EBP-β,binds |
R11628 | T15799 | T15797 | arg2Of | binds,Since |
R11629 | T15799 | T15800 | arg1Of | binds,to |
R11630 | T15799 | T15805 | arg1Of | binds,in |
R11631 | T15799 | T15811 | arg1Of | binds,vitro |
R11632 | T15799 | T15814 | arg1Of | binds,vivo |
R11633 | T15804 | T15800 | arg2Of | promoter,to |
R11634 | T15804 | T15801 | arg1Of | promoter,the |
R11635 | T15804 | T15802 | arg1Of | promoter,SerpinB2 |
R11636 | T15804 | T15803 | arg1Of | promoter,proximal |
R11637 | T15808 | T15805 | arg2Of | manner,in |
R11638 | T15808 | T15806 | arg1Of | manner,an |
R11639 | T15808 | T15807 | arg1Of | manner,LPS-inducible |
R11640 | T15811 | T15810 | arg1Of | vitro,in |
R11641 | T15811 | T15812 | arg1Of | vitro,and |
R11642 | T15812 | T15809 | arg1Of | and,both |
R11643 | T15814 | T15812 | arg2Of | vivo,and |
R11644 | T15814 | T15813 | arg1Of | vivo,in |
R11645 | T15816 | T15817 | arg1Of | we,wanted |
R11646 | T15816 | T15819 | arg1Of | we,address |
R11647 | T15817 | T15797 | arg1Of | wanted,Since |
R11648 | T15817 | T15815 | arg1Of | wanted,"," |
R11649 | T15819 | T15817 | arg2Of | address,wanted |
R11650 | T15819 | T15818 | arg1Of | address,to |
R11651 | T15821 | T15819 | arg2Of | question,address |
R11652 | T15821 | T15820 | arg1Of | question,the |
R11653 | T15821 | T15822 | arg1Of | question,of |
R11654 | T15824 | T15825 | arg1Of | C/EBP-β,was |
R11655 | T15825 | T15822 | arg2Of | was,of |
R11656 | T15825 | T15823 | arg1Of | was,whether |
R11657 | T15828 | T15825 | arg2Of | factor,was |
R11658 | T15828 | T15826 | arg1Of | factor,an |
R11659 | T15828 | T15827 | arg1Of | factor,essential |
R11660 | T15828 | T15829 | arg1Of | factor,for |
R11661 | T15830 | T15829 | arg2Of | driving,for |
R11662 | T15831 | T15830 | arg2Of | transcription,driving |
R11663 | T15831 | T15832 | arg1Of | transcription,from |
R11664 | T15831 | T15836 | arg1Of | transcription,in |
R11665 | T15835 | T15832 | arg2Of | promoter,from |
R11666 | T15835 | T15833 | arg1Of | promoter,the |
R11667 | T15835 | T15834 | arg1Of | promoter,SerpinB2 |
R11668 | T15837 | T15836 | arg2Of | cells,in |
R11669 | T15837 | T15838 | arg1Of | cells,in |
R11670 | T15839 | T15838 | arg2Of | response,in |
R11671 | T15839 | T15840 | arg1Of | response,to |
R11672 | T15841 | T15840 | arg2Of | LPS,to |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15758 | 220-228 | Protein | denotes | SerpinB2 |
T15757 | 153-160 | Protein | denotes | C/EBP-β |
T15756 | 27-35 | Protein | denotes | SerpinB2 |
T15755 | 6-13 | Protein | denotes | C/EBP-β |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15957 | 220-228 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
T15956 | 27-35 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
T15949 | 153-160 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
T15948 | 6-13 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15771 | 250-265 | http://purl.obolibrary.org/obo/GO_0032496 | denotes | response to LPS |
T15769 | 197-210 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15772 | 241-246 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15711 | 0-266 | Sentence | denotes | Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo, we wanted to address the question of whether C/EBP-β was an essential factor for driving transcription from the SerpinB2 promoter in cells in response to LPS. |
T220 | 0-266 | Sentence | denotes | Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo, we wanted to address the question of whether C/EBP-β was an essential factor for driving transcription from the SerpinB2 promoter in cells in response to LPS. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15778 | 220-228 | Protein | denotes | SerpinB2 |
T15777 | 153-160 | Protein | denotes | C/EBP-β |
T15776 | 27-35 | Protein | denotes | SerpinB2 |
T15775 | 6-13 | Protein | denotes | C/EBP-β |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15928 | 220-228 | Protein | denotes | SerpinB2 |
T15927 | 153-160 | Protein | denotes | C/EBP-β |
T15926 | 27-35 | Protein | denotes | SerpinB2 |
T15925 | 6-13 | Protein | denotes | C/EBP-β |
T15940 | 14-19 | Binding | denotes | binds |
T15939 | 197-210 | Transcription | denotes | transcription |
R11743 | T15925 | T15940 | themeOf | C/EBP-β,binds |
R11744 | T15926 | T15940 | themeOf | SerpinB2,binds |
R11745 | T15928 | T15939 | themeOf | SerpinB2,transcription |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16021 | 168-177 | Positive_regulation | denotes | essential |
T16020 | 14-19 | Binding | denotes | binds |
T16009 | 220-228 | Protein | denotes | SerpinB2 |
T16008 | 153-160 | Protein | denotes | C/EBP-β |
T16007 | 27-35 | Protein | denotes | SerpinB2 |
T16006 | 6-13 | Protein | denotes | C/EBP-β |
R11772 | T16006 | T16020 | themeOf | C/EBP-β,binds |
R11773 | T16007 | T16020 | themeOf | SerpinB2,binds |
R11774 | T16008 | T16021 | themeOf | C/EBP-β,essential |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15982 | 168-177 | Positive_regulation | denotes | essential |
T15981 | 197-210 | Transcription | denotes | transcription |
T15980 | 14-19 | Binding | denotes | binds |
T15968 | 220-228 | Protein | denotes | SerpinB2 |
T15967 | 153-160 | Protein | denotes | C/EBP-β |
T15966 | 27-35 | Protein | denotes | SerpinB2 |
T15965 | 6-13 | Protein | denotes | C/EBP-β |
R11759 | T15965 | T15980 | themeOf | C/EBP-β,binds |
R11760 | T15966 | T15980 | themeOf | SerpinB2,binds |
R11761 | T15967 | T15982 | causeOf | C/EBP-β,essential |
R11762 | T15968 | T15981 | themeOf | SerpinB2,transcription |
R11766 | T15981 | T15982 | themeOf | transcription,essential |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16105 | 0-106 | Binding | denotes | Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo |
T16100 | 153-160 | Protein | denotes | C/EBP-β |
T16097 | 6-13 | Protein | denotes | C/EBP-β |
T16096 | 241-246 | Entity | denotes | cells |
T16088 | 216-237 | Entity | denotes | the SerpinB2 promoter |
T16082 | 220-228 | Protein | denotes | SerpinB2 |
T16078 | 27-35 | Protein | denotes | SerpinB2 |
T16075 | 20-53 | Entity | denotes | to the SerpinB2 proximal promoter |
T16074 | 262-265 | Entity | denotes | LPS |
R11800 | T16075 | T16078 | partOf | to the SerpinB2 proximal promoter,SerpinB2 |
R11801 | T16075 | T16105 | themeOf | to the SerpinB2 proximal promoter,Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo |
R11804 | T16088 | T16082 | partOf | the SerpinB2 promoter,SerpinB2 |
R11806 | T16097 | T16105 | themeOf | C/EBP-β,Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16035 | 197-210 | Transcription | denotes | transcription |
T16034 | 14-19 | Binding | denotes | binds |
T16033 | 14-19 | Binding | denotes | binds |
T16032 | 220-237 | Protein | denotes | SerpinB2 promoter |
T16031 | 153-160 | Protein | denotes | C/EBP-β |
T16030 | 27-53 | Protein | denotes | SerpinB2 proximal promoter |
T16029 | 6-13 | Protein | denotes | C/EBP-β |
R11781 | T16029 | T16033 | themeOf | C/EBP-β,binds |
R11782 | T16029 | T16034 | themeOf | C/EBP-β,binds |
R11783 | T16030 | T16034 | themeOf | SerpinB2 proximal promoter,binds |
R11784 | T16032 | T16035 | themeOf | SerpinB2 promoter,transcription |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15666 | 45-53 | Entity | denotes | promoter |
T15665 | 36-44 | Entity | denotes | proximal |
T15664 | 14-19 | Binding | denotes | binds |
T15653 | 220-228 | Protein | denotes | SerpinB2 |
T15652 | 153-160 | Protein | denotes | C/EBP-β |
T15651 | 27-35 | Protein | denotes | SerpinB2 |
T15650 | 6-13 | Protein | denotes | C/EBP-β |
R11580 | T15650 | T15664 | themeOf | C/EBP-β,binds |
R11583 | T15666 | T15664 | themeOf | promoter,binds |
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15693 | 153-160 | Protein | denotes | C/EBP-β |
T15692 | 45-53 | Entity | denotes | promoter |
T15691 | 27-35 | Protein | denotes | SerpinB2 |
T15690 | 14-19 | Binding | denotes | binds |
T15689 | 6-13 | Protein | denotes | C/EBP-β |
T15676 | 220-228 | Protein | denotes | SerpinB2 |
T15675 | 153-160 | Protein | denotes | C/EBP-β |
T15674 | 27-35 | Protein | denotes | SerpinB2 |
T15673 | 6-13 | Protein | denotes | C/EBP-β |
T15696 | 250-258 | Positive_regulation | denotes | response |
T15695 | 220-228 | Protein | denotes | SerpinB2 |
T15694 | 197-210 | Transcription | denotes | transcription |
R11585 | T15689 | T15690 | themeOf | C/EBP-β,binds |
R11586 | T15691 | T15690 | themeOf | SerpinB2,binds |
R11587 | T15692 | T15690 | themeOf | promoter,binds |
R11588 | T15695 | T15694 | themeOf | SerpinB2,transcription |