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PMC:3589482 / 35760-35996 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25944 235-236 . denotes .
T25943 228-235 NN denotes control
T25942 223-227 NNP denotes rIgG
T25941 219-222 DT denotes the
T25940 215-218 CC denotes and
T25939 213-214 , denotes ,
T25938 212-213 -RRB- denotes )
T25937 208-212 CD denotes T217
T25936 207-208 -LRB- denotes (
T25935 205-206 NN denotes β
T25934 204-205 : denotes -
T25933 197-204 NNP denotes p-C/EBP
T25932 195-196 , denotes ,
T25931 194-195 NN denotes β
T25915 99-103 NNP denotes ChIP
T25914 95-98 DT denotes the
T25913 92-94 IN denotes of
T25912 80-91 NN denotes specificity
T25911 76-79 DT denotes the
T25910 73-75 IN denotes of
T25909 62-72 JJ denotes indicative
T25908 60-61 , denotes ,
T25907 53-60 NN denotes control
T25906 49-52 NNP denotes IgG
T25905 42-48 NN denotes rabbit
T25904 38-41 DT denotes the
T25903 32-37 VBG denotes using
T25902 23-31 VBN denotes detected
T25901 19-22 VBD denotes was
T25900 8-18 NN denotes background
T25899 0-7 JJ denotes Minimal
T25930 193-194 : denotes -
T25929 188-193 NNP denotes C/EBP
T25928 180-187 IN denotes against
T25927 169-179 NNS denotes antibodies
T25926 164-168 IN denotes with
T25925 145-163 VBN denotes immunoprecipitated
T25924 135-144 NN denotes chromatin
T25923 132-134 IN denotes of
T25922 123-131 NN denotes analysis
T25921 118-122 NNP denotes qPCR
T25920 116-117 -RRB- denotes )
T25919 115-116 NNP denotes B
T25918 114-115 -LRB- denotes (
T25917 112-113 . denotes .
T25916 104-112 NN denotes reaction
R18498 T25899 T25900 amod Minimal,background
R18499 T25900 T25902 nsubjpass background,detected
R18500 T25901 T25902 auxpass was,detected
R18501 T25902 T25902 ROOT detected,detected
R18502 T25903 T25902 advcl using,detected
R18503 T25904 T25907 det the,control
R18504 T25905 T25907 compound rabbit,control
R18505 T25906 T25907 compound IgG,control
R18506 T25907 T25903 dobj control,using
R18507 T25908 T25902 punct ",",detected
R18508 T25909 T25902 advcl indicative,detected
R18509 T25910 T25909 prep of,indicative
R18510 T25911 T25912 det the,specificity
R18511 T25912 T25910 pobj specificity,of
R18512 T25913 T25912 prep of,specificity
R18513 T25914 T25916 det the,reaction
R18514 T25915 T25916 compound ChIP,reaction
R18515 T25916 T25913 pobj reaction,of
R18516 T25917 T25902 punct .,detected
R18517 T25918 T25922 punct (,analysis
R18518 T25919 T25922 nmod B,analysis
R18519 T25920 T25919 punct ),B
R18520 T25921 T25922 compound qPCR,analysis
R18521 T25922 T25922 ROOT analysis,analysis
R18522 T25923 T25922 prep of,analysis
R18523 T25924 T25923 pobj chromatin,of
R18524 T25925 T25922 dep immunoprecipitated,analysis
R18525 T25926 T25925 prep with,immunoprecipitated
R18526 T25927 T25926 pobj antibodies,with
R18527 T25928 T25927 prep against,antibodies
R18528 T25929 T25928 pobj C/EBP,against
R18529 T25930 T25931 punct -,β
R18530 T25931 T25922 appos β,analysis
R18531 T25932 T25931 punct ",",β
R18532 T25933 T25935 compound p-C/EBP,β
R18533 T25934 T25935 punct -,β
R18534 T25935 T25931 appos β,β
R18535 T25936 T25935 punct (,β
R18536 T25937 T25935 appos T217,β
R18537 T25938 T25935 punct ),β
R18538 T25939 T25931 punct ",",β
R18539 T25940 T25931 cc and,β
R18540 T25941 T25943 det the,control
R18541 T25942 T25943 compound rIgG,control
R18542 T25943 T25931 conj control,β
R18543 T25944 T25922 punct .,analysis

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25565 228-235 NN denotes control
T25564 223-227 NN denotes rIgG
T25563 219-222 DT denotes the
T25562 215-218 CC denotes and
T25561 213-214 -COMMA- denotes ,
T25560 212-213 -RRB- denotes )
T25559 208-212 NN denotes T217
T25558 207-208 -LRB- denotes (
T25557 197-206 NN denotes p-C/EBP-β
T25556 195-196 -COMMA- denotes ,
T25555 188-195 NN denotes C/EBP-β
T25554 180-187 IN denotes against
T25553 169-179 NN denotes antibodies
T25552 164-168 IN denotes with
T25551 145-163 VB denotes immunoprecipitated
T25550 135-144 NN denotes chromatin
T25549 132-134 IN denotes of
T25548 123-131 NN denotes analysis
T25547 118-122 NN denotes qPCR
T25546 116-117 -RRB- denotes )
T25545 115-116 NN denotes B
T25544 114-115 -LRB- denotes (
T25543 104-113 NN denotes reaction.
T25542 99-103 NN denotes ChIP
T25541 95-98 DT denotes the
T25540 92-94 IN denotes of
T25539 80-91 NN denotes specificity
T25538 76-79 DT denotes the
T25537 73-75 IN denotes of
T25536 62-72 JJ denotes indicative
T25535 60-61 -COMMA- denotes ,
T25534 53-60 NN denotes control
T25533 49-52 NN denotes IgG
T25532 42-48 NN denotes rabbit
T25531 38-41 DT denotes the
T25530 32-37 VB denotes using
T25529 23-31 VB denotes detected
T25528 19-22 VB denotes was
T25527 8-18 NN denotes background
T25526 0-7 JJ denotes Minimal
R18267 T25527 T25526 arg1Of background,Minimal
R18268 T25527 T25528 arg1Of background,was
R18269 T25527 T25529 arg2Of background,detected
R18270 T25527 T25530 arg1Of background,using
R18271 T25529 T25528 arg2Of detected,was
R18272 T25530 T25529 arg3Of using,detected
R18273 T25530 T25535 arg1Of using,","
R18274 T25530 T25536 arg1Of using,indicative
R18275 T25534 T25530 arg2Of control,using
R18276 T25534 T25531 arg1Of control,the
R18277 T25534 T25532 arg1Of control,rabbit
R18278 T25534 T25533 arg1Of control,IgG
R18279 T25536 T25537 arg1Of indicative,of
R18280 T25539 T25537 arg2Of specificity,of
R18281 T25539 T25538 arg1Of specificity,the
R18282 T25539 T25540 arg1Of specificity,of
R18283 T25539 T25549 arg1Of specificity,of
R18284 T25545 T25544 arg2Of B,(
R18285 T25546 T25544 arg3Of ),(
R18286 T25548 T25540 arg2Of analysis,of
R18287 T25548 T25541 arg1Of analysis,the
R18288 T25548 T25542 arg1Of analysis,ChIP
R18289 T25548 T25543 arg1Of analysis,reaction.
R18290 T25548 T25544 arg1Of analysis,(
R18291 T25548 T25547 arg1Of analysis,qPCR
R18292 T25550 T25549 arg2Of chromatin,of
R18293 T25550 T25551 arg2Of chromatin,immunoprecipitated
R18294 T25551 T25552 arg1Of immunoprecipitated,with
R18295 T25553 T25552 arg2Of antibodies,with
R18296 T25553 T25554 arg1Of antibodies,against
R18297 T25555 T25556 arg1Of C/EBP-β,","
R18298 T25555 T25562 arg1Of C/EBP-β,and
R18299 T25557 T25556 arg2Of p-C/EBP-β,","
R18300 T25557 T25558 arg1Of p-C/EBP-β,(
R18301 T25559 T25558 arg2Of T217,(
R18302 T25560 T25558 arg3Of ),(
R18303 T25562 T25554 arg2Of and,against
R18304 T25562 T25561 arg1Of and,","
R18305 T25565 T25562 arg2Of control,and
R18306 T25565 T25563 arg1Of control,the
R18307 T25565 T25564 arg1Of control,rIgG

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T25359 197-213 Protein denotes p-C/EBP-β (T217)
T25358 188-195 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T25611 199-206 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25610 188-195 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-MF

Id Subject Object Predicate Lexical cue
T25369 169-179 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T25381 169-179 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T25378 169-179 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T25375 135-144 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T25327 0-236 Sentence denotes Minimal background was detected using the rabbit IgG control, indicative of the specificity of the ChIP reaction. (B) qPCR analysis of chromatin immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), and the rIgG control.
T217 0-236 Sentence denotes Minimal background was detected using the rabbit IgG control, indicative of the specificity of the ChIP reaction. (B) qPCR analysis of chromatin immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), and the rIgG control.

simple1

Id Subject Object Predicate Lexical cue
T25393 197-213 Protein denotes p-C/EBP-β (T217)
T25392 188-195 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T25600 197-213 Protein denotes p-C/EBP-β (T217)
T25599 188-195 Protein denotes C/EBP-β

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T25655 197-213 Protein denotes p-C/EBP-β (T217)
T25654 188-195 Protein denotes C/EBP-β

DLUT931

Id Subject Object Predicate Lexical cue
T25626 197-213 Protein denotes p-C/EBP-β (T217)
T25625 188-195 Protein denotes C/EBP-β

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25740 219-235 Regulation denotes the rIgG control
T25736 132-179 Entity denotes of chromatin immunoprecipitated with antibodies
T25728 223-227 Protein denotes rIgG
T25727 169-179 Entity denotes antibodies
T25722 119-122 Protein denotes PCR
T25715 208-212 Entity denotes T217
T25712 188-195 Protein denotes C/EBP-β
T25706 197-213 Protein denotes p-C/EBP-β (T217)
R18339 T25728 T25740 themeOf rIgG,the rIgG control

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T25680 223-235 Protein denotes rIgG control
T25679 208-212 Protein denotes T217
T25678 188-206 Protein denotes C/EBP-β, p-C/EBP-β
T25677 99-103 Protein denotes ChIP
T25676 49-52 Protein denotes IgG

testone

Id Subject Object Predicate Lexical cue
T25286 197-213 Protein denotes p-C/EBP-β (T217)
T25285 188-195 Protein denotes C/EBP-β

test3

Id Subject Object Predicate Lexical cue
T25320 197-214 Protein denotes p-C/EBP-β (T217),
T25319 188-195 Protein denotes C/EBP-β
T25304 197-213 Protein denotes p-C/EBP-β (T217)
T25303 188-195 Protein denotes C/EBP-β