PMC:3589482 / 35017-36070
Annnotations
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25957 | 1052-1053 | . | denotes | . |
T25956 | 1046-1052 | NN | denotes | method |
T25955 | 1039-1045 | JJ | denotes | 2-ΔΔCt |
T25954 | 1035-1038 | DT | denotes | the |
T25953 | 1029-1034 | VBG | denotes | using |
T25952 | 1022-1028 | NN | denotes | signal |
T25951 | 1017-1021 | NNP | denotes | rIgG |
T25950 | 1014-1016 | TO | denotes | to |
T25949 | 1005-1013 | JJ | denotes | relative |
T25948 | 993-1004 | VBN | denotes | represented |
T25947 | 989-992 | VBP | denotes | are |
T25946 | 984-988 | NNS | denotes | data |
T25945 | 980-983 | DT | denotes | The |
T25944 | 978-979 | . | denotes | . |
T25943 | 971-978 | NN | denotes | control |
T25942 | 966-970 | NNP | denotes | rIgG |
T25941 | 962-965 | DT | denotes | the |
T25940 | 958-961 | CC | denotes | and |
T25939 | 956-957 | , | denotes | , |
T25938 | 955-956 | -RRB- | denotes | ) |
T25937 | 951-955 | CD | denotes | T217 |
T25936 | 950-951 | -LRB- | denotes | ( |
T25935 | 948-949 | NN | denotes | β |
T25934 | 947-948 | : | denotes | - |
T25933 | 940-947 | NNP | denotes | p-C/EBP |
T25932 | 938-939 | , | denotes | , |
T25931 | 937-938 | NN | denotes | β |
T25915 | 842-846 | NNP | denotes | ChIP |
T25914 | 838-841 | DT | denotes | the |
T25913 | 835-837 | IN | denotes | of |
T25912 | 823-834 | NN | denotes | specificity |
T25911 | 819-822 | DT | denotes | the |
T25910 | 816-818 | IN | denotes | of |
T25909 | 805-815 | JJ | denotes | indicative |
T25908 | 803-804 | , | denotes | , |
T25907 | 796-803 | NN | denotes | control |
T25906 | 792-795 | NNP | denotes | IgG |
T25905 | 785-791 | NN | denotes | rabbit |
T25904 | 781-784 | DT | denotes | the |
T25903 | 775-780 | VBG | denotes | using |
T25902 | 766-774 | VBN | denotes | detected |
T25901 | 762-765 | VBD | denotes | was |
T25900 | 751-761 | NN | denotes | background |
T25899 | 743-750 | JJ | denotes | Minimal |
T25898 | 741-742 | . | denotes | . |
T25897 | 730-741 | NN | denotes | stimulation |
T25896 | 726-729 | NNP | denotes | LPS |
T25895 | 716-725 | VBG | denotes | following |
T25894 | 702-715 | NN | denotes | transcription |
T25893 | 695-701 | JJ | denotes | active |
T25892 | 686-694 | VBZ | denotes | suggests |
T25891 | 677-685 | NN | denotes | promoter |
T25890 | 668-676 | NNP | denotes | SerpinB2 |
T25889 | 664-667 | DT | denotes | the |
T25888 | 661-663 | TO | denotes | to |
T25887 | 654-660 | NNP | denotes | RNAPII |
T25886 | 651-653 | IN | denotes | of |
T25885 | 639-650 | NN | denotes | Recruitment |
T25884 | 637-638 | . | denotes | . |
T25883 | 634-637 | NN | denotes | top |
T25882 | 631-633 | IN | denotes | in |
T25881 | 620-630 | VBN | denotes | diagrammed |
T25880 | 617-619 | IN | denotes | as |
T25879 | 615-616 | , | denotes | , |
T25878 | 612-615 | CD | denotes | +19 |
T25877 | 611-612 | NN | denotes | / |
T25876 | 610-611 | CD | denotes | 5 |
T25875 | 609-610 | CD | denotes | − |
T25874 | 605-608 | CC | denotes | and |
T25873 | 601-604 | CD | denotes | 315 |
T25872 | 600-601 | NN | denotes | − |
T25871 | 599-600 | CD | denotes | / |
T25870 | 596-599 | CD | denotes | 338 |
T25869 | 594-595 | , | denotes | , |
T25868 | 587-594 | NNS | denotes | primers |
T25867 | 569-586 | JJ | denotes | promoter-specific |
T25866 | 560-568 | JJ | denotes | proximal |
T25865 | 551-559 | JJ | denotes | SerpinB2 |
T25864 | 544-550 | JJ | denotes | murine |
T25863 | 538-543 | VBG | denotes | using |
T25862 | 531-537 | NNS | denotes | assays |
T25861 | 526-530 | NNP | denotes | ChIP |
T25860 | 523-525 | IN | denotes | in |
T25859 | 514-522 | VBN | denotes | obtained |
T25858 | 506-513 | NN | denotes | pattern |
T25857 | 502-505 | NNP | denotes | PCR |
T25856 | 494-501 | JJ | denotes | Typical |
T25855 | 492-493 | -RRB- | denotes | ) |
T25854 | 491-492 | NNP | denotes | A |
T25853 | 490-491 | -LRB- | denotes | ( |
T25852 | 488-489 | . | denotes | . |
T25851 | 481-488 | NN | denotes | control |
T25850 | 479-480 | -RRB- | denotes | ) |
T25849 | 475-479 | NNP | denotes | rIgG |
T25778 | 128-133 | NN | denotes | assay |
T25848 | 474-475 | -LRB- | denotes | ( |
T25847 | 470-473 | NNP | denotes | IgG |
T25846 | 463-469 | NN | denotes | rabbit |
T25845 | 461-462 | DT | denotes | a |
T25844 | 458-460 | CC | denotes | or |
T25843 | 456-457 | , | denotes | , |
T25842 | 455-456 | -RRB- | denotes | ) |
T25841 | 449-455 | NNP | denotes | RNAPII |
T25840 | 448-449 | -LRB- | denotes | ( |
T25839 | 445-447 | NNP | denotes | II |
T25838 | 434-444 | NNP | denotes | Polymerase |
T25837 | 430-433 | NNP | denotes | RNA |
T25836 | 428-429 | , | denotes | , |
T25835 | 427-428 | -RRB- | denotes | ) |
T25834 | 423-427 | CD | denotes | T217 |
T25833 | 422-423 | -LRB- | denotes | ( |
T25832 | 420-421 | NN | denotes | β |
T25831 | 419-420 | : | denotes | - |
T25830 | 412-419 | NNP | denotes | p-C/EBP |
T25829 | 410-411 | , | denotes | , |
T25828 | 409-410 | NN | denotes | β |
T25827 | 408-409 | : | denotes | - |
T25826 | 403-408 | NNP | denotes | C/EBP |
T25825 | 395-402 | IN | denotes | against |
T25824 | 384-394 | NNS | denotes | antibodies |
T25823 | 379-383 | IN | denotes | with |
T25822 | 360-378 | VBN | denotes | immunoprecipitated |
T25821 | 356-359 | VBD | denotes | was |
T25820 | 354-355 | -RRB- | denotes | ) |
T25819 | 352-354 | NN | denotes | ng |
T25818 | 348-351 | CD | denotes | 700 |
T25817 | 344-347 | CD | denotes | 600 |
T25816 | 343-344 | -LRB- | denotes | ( |
T25815 | 333-342 | NN | denotes | chromatin |
T25814 | 325-332 | JJ | denotes | Soluble |
T25813 | 323-324 | . | denotes | . |
T25812 | 322-323 | -RRB- | denotes | ) |
T25811 | 318-322 | CD | denotes | T217 |
T25810 | 317-318 | -LRB- | denotes | ( |
T25809 | 315-316 | NN | denotes | β |
T25808 | 314-315 | : | denotes | - |
T25807 | 307-314 | NN | denotes | p-C/EBP |
T25806 | 304-306 | CC | denotes | or |
T25805 | 302-303 | NN | denotes | β |
T25804 | 301-302 | : | denotes | - |
T25803 | 296-301 | NNP | denotes | C/EBP |
T25802 | 288-295 | IN | denotes | against |
T25801 | 277-287 | NNS | denotes | antibodies |
T25800 | 271-276 | VBG | denotes | using |
T25799 | 261-270 | VBN | denotes | performed |
T25798 | 241-260 | NN | denotes | immunoprecipitation |
T25797 | 231-240 | NN | denotes | chromatin |
T25796 | 227-230 | CC | denotes | and |
T25795 | 221-226 | NNS | denotes | times |
T25794 | 211-220 | JJ | denotes | indicated |
T25793 | 207-210 | DT | denotes | the |
T25792 | 203-206 | IN | denotes | for |
T25791 | 199-202 | NNP | denotes | LPS |
T25790 | 196-198 | IN | denotes | of |
T25789 | 188-195 | NN | denotes | absence |
T25788 | 185-187 | CC | denotes | or |
T25787 | 176-184 | NN | denotes | presence |
T25786 | 172-175 | DT | denotes | the |
T25785 | 169-171 | IN | denotes | in |
T25784 | 161-168 | VBN | denotes | treated |
T25783 | 156-160 | VBD | denotes | were |
T25782 | 144-155 | NNS | denotes | macrophages |
T25780 | 135-141 | CD | denotes | RAW264 |
T25779 | 133-134 | . | denotes | . |
T25777 | 126-127 | -RRB- | denotes | ) |
T25776 | 122-126 | NNP | denotes | ChIP |
T25775 | 121-122 | -LRB- | denotes | ( |
T25774 | 101-120 | NN | denotes | immunoprecipitation |
T25773 | 91-100 | NN | denotes | chromatin |
T25772 | 88-90 | IN | denotes | by |
T25771 | 77-87 | VBN | denotes | determined |
T25770 | 73-76 | VBD | denotes | was |
T25769 | 68-72 | NN | denotes | vivo |
T25768 | 65-67 | IN | denotes | in |
T25767 | 56-64 | NN | denotes | promoter |
T25766 | 47-55 | JJ | denotes | proximal |
T25765 | 38-46 | NNP | denotes | SerpinB2 |
T25764 | 34-37 | DT | denotes | the |
T25763 | 31-33 | IN | denotes | on |
T25762 | 21-30 | NN | denotes | occupancy |
T25761 | 14-20 | NN | denotes | factor |
T25760 | 0-13 | NNP | denotes | Transcription |
T25930 | 936-937 | : | denotes | - |
T25929 | 931-936 | NNP | denotes | C/EBP |
T25928 | 923-930 | IN | denotes | against |
T25927 | 912-922 | NNS | denotes | antibodies |
T25926 | 907-911 | IN | denotes | with |
T25925 | 888-906 | VBN | denotes | immunoprecipitated |
T25924 | 878-887 | NN | denotes | chromatin |
T25923 | 875-877 | IN | denotes | of |
T25922 | 866-874 | NN | denotes | analysis |
T25921 | 861-865 | NNP | denotes | qPCR |
T25920 | 859-860 | -RRB- | denotes | ) |
T25919 | 858-859 | NNP | denotes | B |
T25918 | 857-858 | -LRB- | denotes | ( |
T25917 | 855-856 | . | denotes | . |
T25916 | 847-855 | NN | denotes | reaction |
T25781 | 141-143 | CD | denotes | .7 |
R18359 | T25760 | T25761 | compound | Transcription,factor |
R18360 | T25761 | T25762 | compound | factor,occupancy |
R18361 | T25762 | T25771 | nsubjpass | occupancy,determined |
R18362 | T25763 | T25762 | prep | on,occupancy |
R18363 | T25764 | T25767 | det | the,promoter |
R18364 | T25765 | T25767 | nmod | SerpinB2,promoter |
R18365 | T25766 | T25767 | amod | proximal,promoter |
R18366 | T25767 | T25763 | pobj | promoter,on |
R18367 | T25768 | T25767 | prep | in,promoter |
R18368 | T25769 | T25768 | pobj | vivo,in |
R18369 | T25770 | T25771 | auxpass | was,determined |
R18370 | T25771 | T25771 | ROOT | determined,determined |
R18371 | T25772 | T25771 | agent | by,determined |
R18372 | T25773 | T25774 | compound | chromatin,immunoprecipitation |
R18373 | T25774 | T25772 | pobj | immunoprecipitation,by |
R18374 | T25775 | T25776 | punct | (,ChIP |
R18375 | T25776 | T25774 | appos | ChIP,immunoprecipitation |
R18376 | T25777 | T25776 | punct | ),ChIP |
R18377 | T25778 | T25774 | conj | assay,immunoprecipitation |
R18378 | T25779 | T25771 | punct | .,determined |
R18379 | T25780 | T25782 | nummod | RAW264,macrophages |
R18380 | T25781 | T25782 | nummod | .7,macrophages |
R18381 | T25782 | T25784 | nsubjpass | macrophages,treated |
R18382 | T25783 | T25784 | auxpass | were,treated |
R18383 | T25784 | T25784 | ROOT | treated,treated |
R18384 | T25785 | T25784 | prep | in,treated |
R18385 | T25786 | T25787 | det | the,presence |
R18386 | T25787 | T25785 | pobj | presence,in |
R18387 | T25788 | T25787 | cc | or,presence |
R18388 | T25789 | T25787 | conj | absence,presence |
R18389 | T25790 | T25789 | prep | of,absence |
R18390 | T25791 | T25790 | pobj | LPS,of |
R18391 | T25792 | T25784 | prep | for,treated |
R18392 | T25793 | T25795 | det | the,times |
R18393 | T25794 | T25795 | amod | indicated,times |
R18394 | T25795 | T25792 | pobj | times,for |
R18395 | T25796 | T25795 | cc | and,times |
R18396 | T25797 | T25798 | compound | chromatin,immunoprecipitation |
R18397 | T25798 | T25799 | nsubj | immunoprecipitation,performed |
R18398 | T25799 | T25784 | advcl | performed,treated |
R18399 | T25800 | T25799 | advcl | using,performed |
R18400 | T25801 | T25800 | dobj | antibodies,using |
R18401 | T25802 | T25800 | prep | against,using |
R18402 | T25803 | T25802 | pobj | C/EBP,against |
R18403 | T25804 | T25805 | punct | -,β |
R18404 | T25805 | T25800 | conj | β,using |
R18405 | T25806 | T25805 | cc | or,β |
R18406 | T25807 | T25805 | conj | p-C/EBP,β |
R18407 | T25808 | T25809 | punct | -,β |
R18408 | T25809 | T25805 | appos | β,β |
R18409 | T25810 | T25809 | punct | (,β |
R18410 | T25811 | T25809 | appos | T217,β |
R18411 | T25812 | T25809 | punct | ),β |
R18412 | T25813 | T25784 | punct | .,treated |
R18413 | T25814 | T25815 | amod | Soluble,chromatin |
R18414 | T25815 | T25822 | nsubjpass | chromatin,immunoprecipitated |
R18415 | T25816 | T25819 | punct | (,ng |
R18416 | T25817 | T25818 | dep | 600,700 |
R18417 | T25818 | T25819 | nummod | 700,ng |
R18418 | T25819 | T25815 | appos | ng,chromatin |
R18419 | T25820 | T25819 | punct | ),ng |
R18420 | T25821 | T25822 | auxpass | was,immunoprecipitated |
R18421 | T25822 | T25822 | ROOT | immunoprecipitated,immunoprecipitated |
R18422 | T25823 | T25822 | prep | with,immunoprecipitated |
R18423 | T25824 | T25823 | pobj | antibodies,with |
R18424 | T25825 | T25824 | prep | against,antibodies |
R18425 | T25826 | T25825 | pobj | C/EBP,against |
R18426 | T25827 | T25828 | punct | -,β |
R18427 | T25828 | T25822 | advcl | β,immunoprecipitated |
R18428 | T25829 | T25828 | punct | ",",β |
R18429 | T25830 | T25832 | compound | p-C/EBP,β |
R18430 | T25831 | T25832 | punct | -,β |
R18431 | T25832 | T25828 | appos | β,β |
R18432 | T25833 | T25832 | punct | (,β |
R18433 | T25834 | T25832 | appos | T217,β |
R18434 | T25835 | T25832 | punct | ),β |
R18435 | T25836 | T25832 | punct | ",",β |
R18436 | T25837 | T25839 | compound | RNA,II |
R18437 | T25838 | T25839 | compound | Polymerase,II |
R18438 | T25839 | T25832 | appos | II,β |
R18439 | T25840 | T25839 | punct | (,II |
R18440 | T25841 | T25839 | appos | RNAPII,II |
R18441 | T25842 | T25839 | punct | ),II |
R18442 | T25843 | T25839 | punct | ",",II |
R18443 | T25844 | T25832 | cc | or,β |
R18444 | T25845 | T25846 | det | a,rabbit |
R18445 | T25846 | T25851 | compound | rabbit,control |
R18446 | T25847 | T25851 | compound | IgG,control |
R18447 | T25848 | T25849 | punct | (,rIgG |
R18448 | T25849 | T25847 | appos | rIgG,IgG |
R18449 | T25850 | T25849 | punct | ),rIgG |
R18450 | T25851 | T25832 | conj | control,β |
R18451 | T25852 | T25822 | punct | .,immunoprecipitated |
R18452 | T25853 | T25854 | punct | (,A |
R18453 | T25854 | T25854 | ROOT | A,A |
R18454 | T25855 | T25854 | punct | ),A |
R18455 | T25856 | T25858 | amod | Typical,pattern |
R18456 | T25857 | T25858 | compound | PCR,pattern |
R18457 | T25858 | T25859 | nsubj | pattern,obtained |
R18458 | T25859 | T25859 | ROOT | obtained,obtained |
R18459 | T25860 | T25859 | prep | in,obtained |
R18460 | T25861 | T25862 | compound | ChIP,assays |
R18461 | T25862 | T25860 | pobj | assays,in |
R18462 | T25863 | T25859 | advcl | using,obtained |
R18463 | T25864 | T25868 | amod | murine,primers |
R18464 | T25865 | T25868 | amod | SerpinB2,primers |
R18465 | T25866 | T25868 | amod | proximal,primers |
R18466 | T25867 | T25868 | amod | promoter-specific,primers |
R18467 | T25868 | T25863 | dobj | primers,using |
R18468 | T25869 | T25872 | punct | ",",− |
R18469 | T25870 | T25871 | compound | 338,/ |
R18470 | T25871 | T25872 | nsubj | /,− |
R18471 | T25872 | T25872 | ROOT | −,− |
R18472 | T25873 | T25872 | nummod | 315,− |
R18473 | T25874 | T25872 | cc | and,− |
R18474 | T25875 | T25877 | meta | −,/ |
R18475 | T25876 | T25877 | nummod | 5,/ |
R18476 | T25877 | T25872 | conj | /,− |
R18477 | T25878 | T25877 | nummod | +19,/ |
R18478 | T25879 | T25877 | punct | ",",/ |
R18479 | T25880 | T25881 | mark | as,diagrammed |
R18480 | T25881 | T25872 | amod | diagrammed,− |
R18481 | T25882 | T25881 | prep | in,diagrammed |
R18482 | T25883 | T25882 | pobj | top,in |
R18483 | T25884 | T25859 | punct | .,obtained |
R18484 | T25885 | T25892 | nsubj | Recruitment,suggests |
R18485 | T25886 | T25885 | prep | of,Recruitment |
R18486 | T25887 | T25886 | pobj | RNAPII,of |
R18487 | T25888 | T25885 | prep | to,Recruitment |
R18488 | T25889 | T25891 | det | the,promoter |
R18489 | T25890 | T25891 | compound | SerpinB2,promoter |
R18490 | T25891 | T25888 | pobj | promoter,to |
R18491 | T25892 | T25892 | ROOT | suggests,suggests |
R18492 | T25893 | T25894 | amod | active,transcription |
R18493 | T25894 | T25892 | dobj | transcription,suggests |
R18494 | T25895 | T25894 | acl | following,transcription |
R18495 | T25896 | T25897 | compound | LPS,stimulation |
R18496 | T25897 | T25895 | dobj | stimulation,following |
R18497 | T25898 | T25892 | punct | .,suggests |
R18498 | T25899 | T25900 | amod | Minimal,background |
R18499 | T25900 | T25902 | nsubjpass | background,detected |
R18500 | T25901 | T25902 | auxpass | was,detected |
R18501 | T25902 | T25902 | ROOT | detected,detected |
R18502 | T25903 | T25902 | advcl | using,detected |
R18503 | T25904 | T25907 | det | the,control |
R18504 | T25905 | T25907 | compound | rabbit,control |
R18505 | T25906 | T25907 | compound | IgG,control |
R18506 | T25907 | T25903 | dobj | control,using |
R18507 | T25908 | T25902 | punct | ",",detected |
R18508 | T25909 | T25902 | advcl | indicative,detected |
R18509 | T25910 | T25909 | prep | of,indicative |
R18510 | T25911 | T25912 | det | the,specificity |
R18511 | T25912 | T25910 | pobj | specificity,of |
R18512 | T25913 | T25912 | prep | of,specificity |
R18513 | T25914 | T25916 | det | the,reaction |
R18514 | T25915 | T25916 | compound | ChIP,reaction |
R18515 | T25916 | T25913 | pobj | reaction,of |
R18516 | T25917 | T25902 | punct | .,detected |
R18517 | T25918 | T25922 | punct | (,analysis |
R18518 | T25919 | T25922 | nmod | B,analysis |
R18519 | T25920 | T25919 | punct | ),B |
R18520 | T25921 | T25922 | compound | qPCR,analysis |
R18521 | T25922 | T25922 | ROOT | analysis,analysis |
R18522 | T25923 | T25922 | prep | of,analysis |
R18523 | T25924 | T25923 | pobj | chromatin,of |
R18524 | T25925 | T25922 | dep | immunoprecipitated,analysis |
R18525 | T25926 | T25925 | prep | with,immunoprecipitated |
R18526 | T25927 | T25926 | pobj | antibodies,with |
R18527 | T25928 | T25927 | prep | against,antibodies |
R18528 | T25929 | T25928 | pobj | C/EBP,against |
R18529 | T25930 | T25931 | punct | -,β |
R18530 | T25931 | T25922 | appos | β,analysis |
R18531 | T25932 | T25931 | punct | ",",β |
R18532 | T25933 | T25935 | compound | p-C/EBP,β |
R18533 | T25934 | T25935 | punct | -,β |
R18534 | T25935 | T25931 | appos | β,β |
R18535 | T25936 | T25935 | punct | (,β |
R18536 | T25937 | T25935 | appos | T217,β |
R18537 | T25938 | T25935 | punct | ),β |
R18538 | T25939 | T25931 | punct | ",",β |
R18539 | T25940 | T25931 | cc | and,β |
R18540 | T25941 | T25943 | det | the,control |
R18541 | T25942 | T25943 | compound | rIgG,control |
R18542 | T25943 | T25931 | conj | control,β |
R18543 | T25944 | T25922 | punct | .,analysis |
R18544 | T25945 | T25946 | det | The,data |
R18545 | T25946 | T25948 | nsubjpass | data,represented |
R18546 | T25947 | T25948 | auxpass | are,represented |
R18547 | T25948 | T25948 | ROOT | represented,represented |
R18548 | T25949 | T25948 | oprd | relative,represented |
R18549 | T25950 | T25948 | prep | to,represented |
R18550 | T25951 | T25952 | compound | rIgG,signal |
R18551 | T25952 | T25950 | pobj | signal,to |
R18552 | T25953 | T25948 | advcl | using,represented |
R18553 | T25954 | T25956 | det | the,method |
R18554 | T25955 | T25956 | amod | 2-ΔΔCt,method |
R18555 | T25956 | T25953 | dobj | method,using |
R18556 | T25957 | T25948 | punct | .,represented |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25577 | 1046-1052 | NN | denotes | method |
T25576 | 1039-1045 | NN | denotes | 2-ΔΔCt |
T25575 | 1035-1038 | DT | denotes | the |
T25574 | 1029-1034 | VB | denotes | using |
T25573 | 1022-1028 | NN | denotes | signal |
T25572 | 1017-1021 | NN | denotes | rIgG |
T25571 | 1014-1016 | TO | denotes | to |
T25570 | 1005-1013 | JJ | denotes | relative |
T25569 | 993-1004 | VB | denotes | represented |
T25568 | 989-992 | VB | denotes | are |
T25567 | 984-988 | NN | denotes | data |
T25566 | 980-983 | DT | denotes | The |
T25565 | 971-978 | NN | denotes | control |
T25564 | 966-970 | NN | denotes | rIgG |
T25563 | 962-965 | DT | denotes | the |
T25562 | 958-961 | CC | denotes | and |
T25561 | 956-957 | -COMMA- | denotes | , |
T25560 | 955-956 | -RRB- | denotes | ) |
T25559 | 951-955 | NN | denotes | T217 |
T25558 | 950-951 | -LRB- | denotes | ( |
T25557 | 940-949 | NN | denotes | p-C/EBP-β |
T25556 | 938-939 | -COMMA- | denotes | , |
T25555 | 931-938 | NN | denotes | C/EBP-β |
T25554 | 923-930 | IN | denotes | against |
T25553 | 912-922 | NN | denotes | antibodies |
T25552 | 907-911 | IN | denotes | with |
T25551 | 888-906 | VB | denotes | immunoprecipitated |
T25550 | 878-887 | NN | denotes | chromatin |
T25549 | 875-877 | IN | denotes | of |
T25548 | 866-874 | NN | denotes | analysis |
T25547 | 861-865 | NN | denotes | qPCR |
T25546 | 859-860 | -RRB- | denotes | ) |
T25545 | 858-859 | NN | denotes | B |
T25544 | 857-858 | -LRB- | denotes | ( |
T25543 | 847-856 | NN | denotes | reaction. |
T25542 | 842-846 | NN | denotes | ChIP |
T25541 | 838-841 | DT | denotes | the |
T25540 | 835-837 | IN | denotes | of |
T25539 | 823-834 | NN | denotes | specificity |
T25538 | 819-822 | DT | denotes | the |
T25537 | 816-818 | IN | denotes | of |
T25536 | 805-815 | JJ | denotes | indicative |
T25535 | 803-804 | -COMMA- | denotes | , |
T25534 | 796-803 | NN | denotes | control |
T25533 | 792-795 | NN | denotes | IgG |
T25532 | 785-791 | NN | denotes | rabbit |
T25531 | 781-784 | DT | denotes | the |
T25530 | 775-780 | VB | denotes | using |
T25529 | 766-774 | VB | denotes | detected |
T25528 | 762-765 | VB | denotes | was |
T25527 | 751-761 | NN | denotes | background |
T25526 | 743-750 | JJ | denotes | Minimal |
T25525 | 730-741 | NN | denotes | stimulation |
T25524 | 726-729 | NN | denotes | LPS |
T25523 | 716-725 | VB | denotes | following |
T25522 | 702-715 | NN | denotes | transcription |
T25521 | 695-701 | JJ | denotes | active |
T25520 | 686-694 | VB | denotes | suggests |
T25519 | 677-685 | NN | denotes | promoter |
T25518 | 668-676 | NN | denotes | SerpinB2 |
T25517 | 664-667 | DT | denotes | the |
T25516 | 661-663 | TO | denotes | to |
T25515 | 654-660 | NN | denotes | RNAPII |
T25514 | 651-653 | IN | denotes | of |
T25513 | 639-650 | NN | denotes | Recruitment |
T25512 | 634-637 | NN | denotes | top |
T25511 | 631-633 | IN | denotes | in |
T25510 | 620-630 | VB | denotes | diagrammed |
T25509 | 617-619 | IN | denotes | as |
T25508 | 615-616 | -COMMA- | denotes | , |
T25507 | 609-615 | CD | denotes | −5/+19 |
T25506 | 605-608 | CC | denotes | and |
T25505 | 596-604 | CD | denotes | 338/−315 |
T25504 | 594-595 | -COMMA- | denotes | , |
T25503 | 587-594 | NN | denotes | primers |
T25502 | 569-586 | JJ | denotes | promoter-specific |
T25501 | 560-568 | JJ | denotes | proximal |
T25500 | 551-559 | NN | denotes | SerpinB2 |
T25499 | 544-550 | JJ | denotes | murine |
T25498 | 538-543 | VB | denotes | using |
T25497 | 531-537 | NN | denotes | assays |
T25496 | 526-530 | NN | denotes | ChIP |
T25495 | 523-525 | IN | denotes | in |
T25494 | 514-522 | VB | denotes | obtained |
T25493 | 506-513 | NN | denotes | pattern |
T25492 | 502-505 | NN | denotes | PCR |
T25491 | 494-501 | JJ | denotes | Typical |
T25490 | 492-493 | -RRB- | denotes | ) |
T25489 | 491-492 | NN | denotes | A |
T25488 | 490-491 | -LRB- | denotes | ( |
T25487 | 481-489 | NN | denotes | control. |
T25486 | 479-480 | -RRB- | denotes | ) |
T25485 | 475-479 | NN | denotes | rIgG |
T25484 | 474-475 | -LRB- | denotes | ( |
T25483 | 470-473 | NN | denotes | IgG |
T25482 | 463-469 | NN | denotes | rabbit |
T25481 | 461-462 | DT | denotes | a |
T25480 | 458-460 | CC | denotes | or |
T25479 | 456-457 | -COMMA- | denotes | , |
T25478 | 455-456 | -RRB- | denotes | ) |
T25477 | 449-455 | NN | denotes | RNAPII |
T25476 | 448-449 | -LRB- | denotes | ( |
T25475 | 445-447 | CD | denotes | II |
T25474 | 434-444 | NN | denotes | Polymerase |
T25473 | 430-433 | NN | denotes | RNA |
T25472 | 428-429 | -COMMA- | denotes | , |
T25471 | 427-428 | -RRB- | denotes | ) |
T25470 | 423-427 | NN | denotes | T217 |
T25469 | 422-423 | -LRB- | denotes | ( |
T25468 | 412-421 | NN | denotes | p-C/EBP-β |
T25467 | 410-411 | -COMMA- | denotes | , |
T25466 | 403-410 | NN | denotes | C/EBP-β |
T25465 | 395-402 | IN | denotes | against |
T25464 | 384-394 | NN | denotes | antibodies |
T25463 | 379-383 | IN | denotes | with |
T25462 | 360-378 | VB | denotes | immunoprecipitated |
T25461 | 356-359 | VB | denotes | was |
T25460 | 354-355 | -RRB- | denotes | ) |
T25459 | 352-354 | NN | denotes | ng |
T25458 | 344-351 | CD | denotes | 600–700 |
T25457 | 343-344 | -LRB- | denotes | ( |
T25456 | 333-342 | NN | denotes | chromatin |
T25455 | 325-332 | JJ | denotes | Soluble |
T25454 | 322-323 | -RRB- | denotes | ) |
T25453 | 318-322 | NN | denotes | T217 |
T25452 | 317-318 | -LRB- | denotes | ( |
T25451 | 307-316 | NN | denotes | p-C/EBP-β |
T25450 | 304-306 | CC | denotes | or |
T25449 | 296-303 | NN | denotes | C/EBP-β |
T25448 | 288-295 | IN | denotes | against |
T25447 | 277-287 | NN | denotes | antibodies |
T25446 | 271-276 | VB | denotes | using |
T25445 | 261-270 | VB | denotes | performed |
T25444 | 241-260 | NN | denotes | immunoprecipitation |
T25443 | 231-240 | NN | denotes | chromatin |
T25442 | 227-230 | CC | denotes | and |
T25441 | 221-226 | NN | denotes | times |
T25440 | 211-220 | VB | denotes | indicated |
T25439 | 207-210 | DT | denotes | the |
T25438 | 203-206 | IN | denotes | for |
T25437 | 199-202 | NN | denotes | LPS |
T25436 | 196-198 | IN | denotes | of |
T25435 | 188-195 | NN | denotes | absence |
T25434 | 185-187 | CC | denotes | or |
T25433 | 176-184 | NN | denotes | presence |
T25432 | 172-175 | DT | denotes | the |
T25431 | 169-171 | IN | denotes | in |
T25430 | 161-168 | VB | denotes | treated |
T25429 | 156-160 | VB | denotes | were |
T25428 | 144-155 | NN | denotes | macrophages |
T25427 | 135-143 | NN | denotes | RAW264.7 |
T25426 | 128-133 | NN | denotes | assay |
T25425 | 126-127 | -RRB- | denotes | ) |
T25424 | 122-126 | NN | denotes | ChIP |
T25423 | 121-122 | -LRB- | denotes | ( |
T25422 | 101-120 | NN | denotes | immunoprecipitation |
T25421 | 91-100 | NN | denotes | chromatin |
T25420 | 88-90 | IN | denotes | by |
T25419 | 77-87 | VB | denotes | determined |
T25418 | 73-76 | VB | denotes | was |
T25417 | 68-72 | FW | denotes | vivo |
T25416 | 65-67 | FW | denotes | in |
T25415 | 56-64 | NN | denotes | promoter |
T25414 | 47-55 | JJ | denotes | proximal |
T25410 | 21-30 | NN | denotes | occupancy |
T25409 | 14-20 | NN | denotes | factor |
T25408 | 0-13 | NN | denotes | Transcription |
T25413 | 38-46 | NN | denotes | SerpinB2 |
T25412 | 34-37 | DT | denotes | the |
T25411 | 31-33 | IN | denotes | on |
R18149 | T25410 | T25408 | arg1Of | occupancy,Transcription |
R18150 | T25410 | T25409 | arg1Of | occupancy,factor |
R18151 | T25410 | T25411 | arg1Of | occupancy,on |
R18152 | T25410 | T25418 | arg1Of | occupancy,was |
R18153 | T25410 | T25419 | arg2Of | occupancy,determined |
R18154 | T25415 | T25411 | arg2Of | promoter,on |
R18155 | T25415 | T25412 | arg1Of | promoter,the |
R18156 | T25415 | T25413 | arg1Of | promoter,SerpinB2 |
R18157 | T25415 | T25414 | arg1Of | promoter,proximal |
R18158 | T25415 | T25417 | arg1Of | promoter,vivo |
R18159 | T25417 | T25416 | arg1Of | vivo,in |
R18160 | T25419 | T25418 | arg2Of | determined,was |
R18161 | T25422 | T25421 | arg1Of | immunoprecipitation,chromatin |
R18162 | T25422 | T25423 | arg1Of | immunoprecipitation,( |
R18163 | T25424 | T25423 | arg2Of | ChIP,( |
R18164 | T25425 | T25423 | arg3Of | ),( |
R18165 | T25426 | T25419 | arg1Of | assay,determined |
R18166 | T25426 | T25420 | arg2Of | assay,by |
R18167 | T25426 | T25422 | arg1Of | assay,immunoprecipitation |
R18168 | T25428 | T25427 | arg1Of | macrophages,RAW264.7 |
R18169 | T25428 | T25429 | arg1Of | macrophages,were |
R18170 | T25428 | T25430 | arg2Of | macrophages,treated |
R18171 | T25430 | T25429 | arg2Of | treated,were |
R18172 | T25430 | T25431 | arg1Of | treated,in |
R18173 | T25430 | T25446 | modOf | treated,using |
R18174 | T25433 | T25434 | arg1Of | presence,or |
R18175 | T25434 | T25431 | arg2Of | or,in |
R18176 | T25434 | T25432 | arg1Of | or,the |
R18177 | T25434 | T25436 | arg1Of | or,of |
R18178 | T25434 | T25438 | arg1Of | or,for |
R18179 | T25435 | T25434 | arg2Of | absence,or |
R18180 | T25437 | T25436 | arg2Of | LPS,of |
R18181 | T25441 | T25442 | arg1Of | times,and |
R18182 | T25443 | T25442 | arg2Of | chromatin,and |
R18183 | T25444 | T25438 | arg2Of | immunoprecipitation,for |
R18184 | T25444 | T25439 | arg1Of | immunoprecipitation,the |
R18185 | T25444 | T25440 | arg2Of | immunoprecipitation,indicated |
R18186 | T25444 | T25441 | arg1Of | immunoprecipitation,times |
R18187 | T25444 | T25443 | arg1Of | immunoprecipitation,chromatin |
R18188 | T25444 | T25445 | arg2Of | immunoprecipitation,performed |
R18189 | T25446 | T25448 | arg1Of | using,against |
R18190 | T25447 | T25446 | arg2Of | antibodies,using |
R18191 | T25449 | T25450 | arg1Of | C/EBP-β,or |
R18192 | T25450 | T25448 | arg2Of | or,against |
R18193 | T25450 | T25452 | arg1Of | or,( |
R18194 | T25451 | T25450 | arg2Of | p-C/EBP-β,or |
R18195 | T25453 | T25452 | arg2Of | T217,( |
R18196 | T25454 | T25452 | arg3Of | ),( |
R18197 | T25456 | T25455 | arg1Of | chromatin,Soluble |
R18198 | T25456 | T25457 | arg1Of | chromatin,( |
R18199 | T25456 | T25461 | arg1Of | chromatin,was |
R18200 | T25456 | T25462 | arg2Of | chromatin,immunoprecipitated |
R18201 | T25459 | T25457 | arg2Of | ng,( |
R18202 | T25459 | T25458 | arg1Of | ng,600–700 |
R18203 | T25460 | T25457 | arg3Of | ),( |
R18204 | T25462 | T25461 | arg2Of | immunoprecipitated,was |
R18205 | T25462 | T25463 | arg1Of | immunoprecipitated,with |
R18206 | T25464 | T25463 | arg2Of | antibodies,with |
R18207 | T25464 | T25465 | arg1Of | antibodies,against |
R18208 | T25466 | T25467 | arg1Of | C/EBP-β,"," |
R18209 | T25466 | T25472 | arg1Of | C/EBP-β,"," |
R18210 | T25468 | T25467 | arg2Of | p-C/EBP-β,"," |
R18211 | T25468 | T25469 | arg1Of | p-C/EBP-β,( |
R18212 | T25470 | T25469 | arg2Of | T217,( |
R18213 | T25471 | T25469 | arg3Of | ),( |
R18214 | T25472 | T25480 | arg1Of | ",",or |
R18215 | T25474 | T25472 | arg2Of | Polymerase,"," |
R18216 | T25474 | T25473 | arg1Of | Polymerase,RNA |
R18217 | T25474 | T25475 | arg1Of | Polymerase,II |
R18218 | T25474 | T25476 | arg1Of | Polymerase,( |
R18219 | T25477 | T25476 | arg2Of | RNAPII,( |
R18220 | T25478 | T25476 | arg3Of | ),( |
R18221 | T25480 | T25465 | arg2Of | or,against |
R18222 | T25480 | T25479 | arg1Of | or,"," |
R18223 | T25485 | T25484 | arg2Of | rIgG,( |
R18224 | T25486 | T25484 | arg3Of | ),( |
R18225 | T25487 | T25482 | arg1Of | control.,rabbit |
R18226 | T25487 | T25483 | arg1Of | control.,IgG |
R18227 | T25487 | T25484 | arg1Of | control.,( |
R18228 | T25487 | T25488 | arg1Of | control.,( |
R18229 | T25489 | T25488 | arg2Of | A,( |
R18230 | T25490 | T25488 | arg3Of | ),( |
R18231 | T25493 | T25480 | arg2Of | pattern,or |
R18232 | T25493 | T25481 | arg1Of | pattern,a |
R18233 | T25493 | T25487 | arg1Of | pattern,control. |
R18234 | T25493 | T25491 | arg1Of | pattern,Typical |
R18235 | T25493 | T25492 | arg1Of | pattern,PCR |
R18236 | T25493 | T25494 | arg2Of | pattern,obtained |
R18237 | T25494 | T25495 | arg1Of | obtained,in |
R18238 | T25494 | T25508 | arg1Of | obtained,"," |
R18239 | T25494 | T25509 | arg1Of | obtained,as |
R18240 | T25497 | T25495 | arg2Of | assays,in |
R18241 | T25497 | T25496 | arg1Of | assays,ChIP |
R18242 | T25497 | T25498 | arg1Of | assays,using |
R18243 | T25503 | T25498 | arg2Of | primers,using |
R18244 | T25503 | T25499 | arg1Of | primers,murine |
R18245 | T25503 | T25500 | arg1Of | primers,SerpinB2 |
R18246 | T25503 | T25501 | arg1Of | primers,proximal |
R18247 | T25503 | T25502 | arg1Of | primers,promoter-specific |
R18248 | T25503 | T25504 | arg1Of | primers,"," |
R18249 | T25505 | T25506 | arg1Of | 338/−315,and |
R18250 | T25506 | T25504 | arg2Of | and,"," |
R18251 | T25507 | T25506 | arg2Of | −5/+19,and |
R18252 | T25510 | T25509 | arg2Of | diagrammed,as |
R18253 | T25510 | T25511 | arg1Of | diagrammed,in |
R18254 | T25512 | T25511 | arg2Of | top,in |
R18255 | T25513 | T25514 | arg1Of | Recruitment,of |
R18256 | T25513 | T25516 | arg1Of | Recruitment,to |
R18257 | T25513 | T25520 | arg1Of | Recruitment,suggests |
R18258 | T25515 | T25514 | arg2Of | RNAPII,of |
R18259 | T25519 | T25516 | arg2Of | promoter,to |
R18260 | T25519 | T25517 | arg1Of | promoter,the |
R18261 | T25519 | T25518 | arg1Of | promoter,SerpinB2 |
R18262 | T25520 | T25523 | arg1Of | suggests,following |
R18263 | T25522 | T25520 | arg2Of | transcription,suggests |
R18264 | T25522 | T25521 | arg1Of | transcription,active |
R18265 | T25525 | T25523 | arg2Of | stimulation,following |
R18266 | T25525 | T25524 | arg1Of | stimulation,LPS |
R18267 | T25527 | T25526 | arg1Of | background,Minimal |
R18268 | T25527 | T25528 | arg1Of | background,was |
R18269 | T25527 | T25529 | arg2Of | background,detected |
R18270 | T25527 | T25530 | arg1Of | background,using |
R18271 | T25529 | T25528 | arg2Of | detected,was |
R18272 | T25530 | T25529 | arg3Of | using,detected |
R18273 | T25530 | T25535 | arg1Of | using,"," |
R18274 | T25530 | T25536 | arg1Of | using,indicative |
R18275 | T25534 | T25530 | arg2Of | control,using |
R18276 | T25534 | T25531 | arg1Of | control,the |
R18277 | T25534 | T25532 | arg1Of | control,rabbit |
R18278 | T25534 | T25533 | arg1Of | control,IgG |
R18279 | T25536 | T25537 | arg1Of | indicative,of |
R18280 | T25539 | T25537 | arg2Of | specificity,of |
R18281 | T25539 | T25538 | arg1Of | specificity,the |
R18282 | T25539 | T25540 | arg1Of | specificity,of |
R18283 | T25539 | T25549 | arg1Of | specificity,of |
R18284 | T25545 | T25544 | arg2Of | B,( |
R18285 | T25546 | T25544 | arg3Of | ),( |
R18286 | T25548 | T25540 | arg2Of | analysis,of |
R18287 | T25548 | T25541 | arg1Of | analysis,the |
R18288 | T25548 | T25542 | arg1Of | analysis,ChIP |
R18289 | T25548 | T25543 | arg1Of | analysis,reaction. |
R18290 | T25548 | T25544 | arg1Of | analysis,( |
R18291 | T25548 | T25547 | arg1Of | analysis,qPCR |
R18292 | T25550 | T25549 | arg2Of | chromatin,of |
R18293 | T25550 | T25551 | arg2Of | chromatin,immunoprecipitated |
R18294 | T25551 | T25552 | arg1Of | immunoprecipitated,with |
R18295 | T25553 | T25552 | arg2Of | antibodies,with |
R18296 | T25553 | T25554 | arg1Of | antibodies,against |
R18297 | T25555 | T25556 | arg1Of | C/EBP-β,"," |
R18298 | T25555 | T25562 | arg1Of | C/EBP-β,and |
R18299 | T25557 | T25556 | arg2Of | p-C/EBP-β,"," |
R18300 | T25557 | T25558 | arg1Of | p-C/EBP-β,( |
R18301 | T25559 | T25558 | arg2Of | T217,( |
R18302 | T25560 | T25558 | arg3Of | ),( |
R18303 | T25562 | T25554 | arg2Of | and,against |
R18304 | T25562 | T25561 | arg1Of | and,"," |
R18305 | T25565 | T25562 | arg2Of | control,and |
R18306 | T25565 | T25563 | arg1Of | control,the |
R18307 | T25565 | T25564 | arg1Of | control,rIgG |
R18308 | T25567 | T25566 | arg1Of | data,The |
R18309 | T25567 | T25568 | arg1Of | data,are |
R18310 | T25567 | T25569 | arg2Of | data,represented |
R18311 | T25569 | T25568 | arg2Of | represented,are |
R18312 | T25569 | T25571 | arg1Of | represented,to |
R18313 | T25571 | T25570 | arg1Of | to,relative |
R18314 | T25573 | T25571 | arg2Of | signal,to |
R18315 | T25573 | T25572 | arg1Of | signal,rIgG |
R18316 | T25573 | T25574 | arg1Of | signal,using |
R18317 | T25577 | T25574 | arg2Of | method,using |
R18318 | T25577 | T25575 | arg1Of | method,the |
R18319 | T25577 | T25576 | arg1Of | method,2-ΔΔCt |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25351 | 38-46 | Protein | denotes | SerpinB2 |
T25360 | 1017-1021 | Protein | denotes | rIgG |
T25359 | 940-956 | Protein | denotes | p-C/EBP-β (T217) |
T25358 | 931-938 | Protein | denotes | C/EBP-β |
T25357 | 668-676 | Protein | denotes | SerpinB2 |
T25356 | 551-559 | Protein | denotes | SerpinB2 |
T25355 | 412-428 | Protein | denotes | p-C/EBP-β (T217) |
T25354 | 403-410 | Protein | denotes | C/EBP-β |
T25353 | 307-323 | Protein | denotes | p-C/EBP-β (T217) |
T25352 | 296-303 | Protein | denotes | C/EBP-β |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25615 | 668-676 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
T25614 | 551-559 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
T25613 | 38-46 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
T25611 | 942-949 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
T25610 | 931-938 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
T25609 | 414-421 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
T25608 | 403-410 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
T25607 | 309-316 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
T25606 | 296-303 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25366 | 1022-1028 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signal |
T25365 | 430-447 | http://purl.obolibrary.org/obo/GO_0003899 | denotes | RNA Polymerase II |
T25364 | 430-447 | http://purl.obolibrary.org/obo/GO_0001055 | denotes | RNA Polymerase II |
T25363 | 430-447 | http://purl.obolibrary.org/obo/GO_1990114 | denotes | RNA Polymerase II |
T25362 | 702-715 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
T25361 | 0-13 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | Transcription |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25371 | 430-447 | http://purl.obolibrary.org/obo/GO_0003899 | denotes | RNA Polymerase II |
T25370 | 430-447 | http://purl.obolibrary.org/obo/GO_0001055 | denotes | RNA Polymerase II |
T25369 | 912-922 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
T25368 | 384-394 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
T25367 | 277-287 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25382 | 430-447 | http://purl.obolibrary.org/obo/GO_0005665 | denotes | RNA Polymerase II |
T25381 | 912-922 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibodies |
T25380 | 384-394 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibodies |
T25379 | 277-287 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibodies |
T25378 | 912-922 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibodies |
T25377 | 384-394 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibodies |
T25376 | 277-287 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibodies |
T25375 | 878-887 | http://purl.obolibrary.org/obo/GO_0000785 | denotes | chromatin |
T25374 | 333-342 | http://purl.obolibrary.org/obo/GO_0000785 | denotes | chromatin |
T25373 | 231-240 | http://purl.obolibrary.org/obo/GO_0000785 | denotes | chromatin |
T25372 | 91-100 | http://purl.obolibrary.org/obo/GO_0000785 | denotes | chromatin |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25328 | 980-1053 | Sentence | denotes | The data are represented relative to rIgG signal using the 2-ΔΔCt method. |
T25327 | 743-979 | Sentence | denotes | Minimal background was detected using the rabbit IgG control, indicative of the specificity of the ChIP reaction. (B) qPCR analysis of chromatin immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), and the rIgG control. |
T25326 | 639-742 | Sentence | denotes | Recruitment of RNAPII to the SerpinB2 promoter suggests active transcription following LPS stimulation. |
T25325 | 325-638 | Sentence | denotes | Soluble chromatin (600–700 ng) was immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), RNA Polymerase II (RNAPII), or a rabbit IgG (rIgG) control. (A) Typical PCR pattern obtained in ChIP assays using murine SerpinB2 proximal promoter-specific primers, 338/−315 and −5/+19, as diagrammed in top. |
T25324 | 135-324 | Sentence | denotes | RAW264.7 macrophages were treated in the presence or absence of LPS for the indicated times and chromatin immunoprecipitation performed using antibodies against C/EBP-β or p-C/EBP-β (T217). |
T25323 | 0-134 | Sentence | denotes | Transcription factor occupancy on the SerpinB2 proximal promoter in vivo was determined by chromatin immunoprecipitation (ChIP) assay. |
T213 | 0-134 | Sentence | denotes | Transcription factor occupancy on the SerpinB2 proximal promoter in vivo was determined by chromatin immunoprecipitation (ChIP) assay. |
T214 | 135-324 | Sentence | denotes | RAW264.7 macrophages were treated in the presence or absence of LPS for the indicated times and chromatin immunoprecipitation performed using antibodies against C/EBP-β or p-C/EBP-β (T217). |
T215 | 325-638 | Sentence | denotes | Soluble chromatin (600–700 ng) was immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), RNA Polymerase II (RNAPII), or a rabbit IgG (rIgG) control. (A) Typical PCR pattern obtained in ChIP assays using murine SerpinB2 proximal promoter-specific primers, 338/−315 and −5/+19, as diagrammed in top. |
T216 | 639-742 | Sentence | denotes | Recruitment of RNAPII to the SerpinB2 promoter suggests active transcription following LPS stimulation. |
T217 | 743-979 | Sentence | denotes | Minimal background was detected using the rabbit IgG control, indicative of the specificity of the ChIP reaction. (B) qPCR analysis of chromatin immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), and the rIgG control. |
T218 | 980-1053 | Sentence | denotes | The data are represented relative to rIgG signal using the 2-ΔΔCt method. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25394 | 1017-1021 | Protein | denotes | rIgG |
T25393 | 940-956 | Protein | denotes | p-C/EBP-β (T217) |
T25392 | 931-938 | Protein | denotes | C/EBP-β |
T25391 | 668-676 | Protein | denotes | SerpinB2 |
T25390 | 551-559 | Protein | denotes | SerpinB2 |
T25389 | 412-428 | Protein | denotes | p-C/EBP-β (T217) |
T25388 | 403-410 | Protein | denotes | C/EBP-β |
T25387 | 307-323 | Protein | denotes | p-C/EBP-β (T217) |
T25386 | 296-303 | Protein | denotes | C/EBP-β |
T25385 | 38-46 | Protein | denotes | SerpinB2 |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25604 | 639-650 | Binding | denotes | Recruitment |
T25603 | 21-30 | Binding | denotes | occupancy |
T25601 | 1017-1021 | Protein | denotes | rIgG |
T25600 | 940-956 | Protein | denotes | p-C/EBP-β (T217) |
T25599 | 931-938 | Protein | denotes | C/EBP-β |
T25598 | 668-676 | Protein | denotes | SerpinB2 |
T25597 | 551-559 | Protein | denotes | SerpinB2 |
T25596 | 412-428 | Protein | denotes | p-C/EBP-β (T217) |
T25595 | 403-410 | Protein | denotes | C/EBP-β |
T25594 | 307-323 | Protein | denotes | p-C/EBP-β (T217) |
T25593 | 296-303 | Protein | denotes | C/EBP-β |
T25592 | 38-46 | Protein | denotes | SerpinB2 |
R18322 | T25592 | T25603 | themeOf | SerpinB2,occupancy |
R18323 | T25598 | T25604 | themeOf | SerpinB2,Recruitment |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25659 | 639-650 | Binding | denotes | Recruitment |
T25658 | 21-30 | Binding | denotes | occupancy |
T25656 | 1017-1021 | Protein | denotes | rIgG |
T25655 | 940-956 | Protein | denotes | p-C/EBP-β (T217) |
T25654 | 931-938 | Protein | denotes | C/EBP-β |
T25653 | 668-676 | Protein | denotes | SerpinB2 |
T25652 | 551-559 | Protein | denotes | SerpinB2 |
T25651 | 412-428 | Protein | denotes | p-C/EBP-β (T217) |
T25650 | 403-410 | Protein | denotes | C/EBP-β |
T25649 | 307-323 | Protein | denotes | p-C/EBP-β (T217) |
T25648 | 296-303 | Protein | denotes | C/EBP-β |
T25647 | 38-46 | Protein | denotes | SerpinB2 |
R18332 | T25647 | T25658 | themeOf | SerpinB2,occupancy |
R18333 | T25653 | T25659 | themeOf | SerpinB2,Recruitment |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25629 | 639-650 | Binding | denotes | Recruitment |
T25627 | 1017-1021 | Protein | denotes | rIgG |
T25626 | 940-956 | Protein | denotes | p-C/EBP-β (T217) |
T25625 | 931-938 | Protein | denotes | C/EBP-β |
T25624 | 668-676 | Protein | denotes | SerpinB2 |
T25623 | 551-559 | Protein | denotes | SerpinB2 |
T25622 | 412-428 | Protein | denotes | p-C/EBP-β (T217) |
T25621 | 403-410 | Protein | denotes | C/EBP-β |
T25620 | 307-323 | Protein | denotes | p-C/EBP-β (T217) |
T25619 | 296-303 | Protein | denotes | C/EBP-β |
T25618 | 38-46 | Protein | denotes | SerpinB2 |
T25630 | 716-725 | Positive_regulation | denotes | following |
R18326 | T25624 | T25629 | themeOf | SerpinB2,Recruitment |
R18327 | T25629 | T25630 | themeOf | Recruitment,following |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25741 | 664-741 | Transcription | denotes | the SerpinB2 promoter suggests active transcription following LPS stimulation |
T25740 | 962-978 | Regulation | denotes | the rIgG control |
T25739 | 569-586 | Entity | denotes | promoter-specific |
T25738 | 231-240 | Entity | denotes | chromatin |
T25737 | 726-729 | Entity | denotes | LPS |
T25736 | 875-922 | Entity | denotes | of chromatin immunoprecipitated with antibodies |
T25735 | 277-287 | Entity | denotes | antibodies |
T25734 | 677-685 | Entity | denotes | promoter |
T25732 | 470-472 | Protein | denotes | Ig |
T25731 | 1017-1021 | Protein | denotes | rIgG |
T25730 | 664-694 | Protein | denotes | the SerpinB2 promoter suggests |
T25729 | 403-447 | Protein | denotes | C/EBP-β, p-C/EBP-β (T217), RNA Polymerase II |
T25728 | 966-970 | Protein | denotes | rIgG |
T25727 | 912-922 | Entity | denotes | antibodies |
T25726 | 379-394 | Entity | denotes | with antibodies |
T25725 | 502-505 | Protein | denotes | PCR |
T25723 | 196-202 | Entity | denotes | of LPS |
T25722 | 862-865 | Protein | denotes | PCR |
T25721 | 296-303 | Protein | denotes | C/EBP-β |
T25719 | 318-322 | Entity | denotes | T217 |
T25718 | 403-429 | Protein | denotes | C/EBP-β, p-C/EBP-β (T217), |
T25717 | 91-100 | Entity | denotes | chromatin |
T25716 | 551-559 | Protein | denotes | SerpinB2 |
T25715 | 951-955 | Entity | denotes | T217 |
T25714 | 56-72 | Entity | denotes | promoter in vivo |
T25713 | 412-428 | Protein | denotes | p-C/EBP-β (T217) |
T25712 | 931-938 | Protein | denotes | C/EBP-β |
T25711 | 307-316 | Protein | denotes | p-C/EBP-β |
T25710 | 475-479 | Protein | denotes | rIgG |
T25709 | 34-55 | Protein | denotes | the SerpinB2 proximal |
T25708 | 526-537 | Entity | denotes | ChIP assays |
T25707 | 423-427 | Entity | denotes | T217 |
T25706 | 940-956 | Protein | denotes | p-C/EBP-β (T217) |
T25705 | 135-155 | Entity | denotes | RAW264.7 macrophages |
T25704 | 325-342 | Entity | denotes | Soluble chromatin |
R18339 | T25728 | T25740 | themeOf | rIgG,the rIgG control |
R18340 | T25730 | T25741 | themeOf | the SerpinB2 promoter suggests,the SerpinB2 promoter suggests active transcription following LPS stimulation |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25681 | 1017-1021 | Protein | denotes | rIgG |
T25680 | 966-978 | Protein | denotes | rIgG control |
T25679 | 951-955 | Protein | denotes | T217 |
T25678 | 931-949 | Protein | denotes | C/EBP-β, p-C/EBP-β |
T25677 | 842-846 | Protein | denotes | ChIP |
T25676 | 792-795 | Protein | denotes | IgG |
T25675 | 639-650 | Binding | denotes | Recruitment |
T25674 | 668-685 | Protein | denotes | SerpinB2 promoter |
T25673 | 654-660 | Protein | denotes | RNAPII |
T25672 | 475-479 | Protein | denotes | rIgG |
T25671 | 463-473 | Protein | denotes | rabbit IgG |
T25670 | 449-455 | Protein | denotes | RNAPII |
T25669 | 430-447 | Protein | denotes | RNA Polymerase II |
T25668 | 423-427 | Protein | denotes | T217 |
T25667 | 403-421 | Protein | denotes | C/EBP-β, p-C/EBP-β |
T25666 | 318-322 | Protein | denotes | T217 |
T25665 | 307-316 | Protein | denotes | p-C/EBP-β |
T25664 | 296-303 | Protein | denotes | C/EBP-β |
T25663 | 38-64 | Protein | denotes | SerpinB2 proximal promoter |
R18334 | T25673 | T25675 | themeOf | RNAPII,Recruitment |
R18335 | T25674 | T25675 | themeOf | SerpinB2 promoter,Recruitment |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25293 | 702-715 | Transcription | denotes | transcription |
T25292 | 677-685 | Entity | denotes | promoter |
T25291 | 639-650 | Binding | denotes | Recruitment |
T25290 | 56-64 | Entity | denotes | promoter |
T25287 | 1017-1021 | Protein | denotes | rIgG |
T25286 | 940-956 | Protein | denotes | p-C/EBP-β (T217) |
T25285 | 931-938 | Protein | denotes | C/EBP-β |
T25284 | 668-676 | Protein | denotes | SerpinB2 |
T25283 | 551-559 | Protein | denotes | SerpinB2 |
T25282 | 412-428 | Protein | denotes | p-C/EBP-β (T217) |
T25281 | 403-410 | Protein | denotes | C/EBP-β |
T25280 | 307-323 | Protein | denotes | p-C/EBP-β (T217) |
T25279 | 296-303 | Protein | denotes | C/EBP-β |
T25278 | 38-46 | Protein | denotes | SerpinB2 |
R18119 | T25284 | T25293 | themeOf | SerpinB2,transcription |
R18122 | T25290 | T25278 | partOf | promoter,SerpinB2 |
R18123 | T25292 | T25291 | themeOf | promoter,Recruitment |
R18124 | T25292 | T25284 | partOf | promoter,SerpinB2 |
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25321 | 1017-1021 | Protein | denotes | rIgG |
T25320 | 940-957 | Protein | denotes | p-C/EBP-β (T217), |
T25319 | 931-938 | Protein | denotes | C/EBP-β |
T25318 | 702-715 | Transcription | denotes | transcription |
T25317 | 677-685 | Entity | denotes | promoter |
T25316 | 668-676 | Protein | denotes | SerpinB2 |
T25315 | 639-650 | Binding | denotes | Recruitment |
T25314 | 551-559 | Protein | denotes | SerpinB2 |
T25313 | 412-429 | Protein | denotes | p-C/EBP-β (T217), |
T25312 | 403-410 | Protein | denotes | C/EBP-β |
T25311 | 296-303 | Protein | denotes | C/EBP-β |
T25310 | 38-46 | Protein | denotes | SerpinB2 |
T25309 | 21-30 | Binding | denotes | occupancy |
T25305 | 1017-1021 | Protein | denotes | rIgG |
T25304 | 940-956 | Protein | denotes | p-C/EBP-β (T217) |
T25303 | 931-938 | Protein | denotes | C/EBP-β |
T25302 | 668-676 | Protein | denotes | SerpinB2 |
T25301 | 551-559 | Protein | denotes | SerpinB2 |
T25300 | 412-428 | Protein | denotes | p-C/EBP-β (T217) |
T25299 | 403-410 | Protein | denotes | C/EBP-β |
T25298 | 307-323 | Protein | denotes | p-C/EBP-β (T217) |
T25297 | 296-303 | Protein | denotes | C/EBP-β |
T25296 | 38-46 | Protein | denotes | SerpinB2 |
R18126 | T25317 | T25315 | themeOf | promoter,Recruitment |
R18127 | T25317 | T25316 | partOf | promoter,SerpinB2 |