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PMC:3589482 / 35017-35151 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25778 128-133 NN denotes assay
T25779 133-134 . denotes .
T25777 126-127 -RRB- denotes )
T25776 122-126 NNP denotes ChIP
T25775 121-122 -LRB- denotes (
T25774 101-120 NN denotes immunoprecipitation
T25773 91-100 NN denotes chromatin
T25772 88-90 IN denotes by
T25771 77-87 VBN denotes determined
T25770 73-76 VBD denotes was
T25769 68-72 NN denotes vivo
T25768 65-67 IN denotes in
T25767 56-64 NN denotes promoter
T25766 47-55 JJ denotes proximal
T25765 38-46 NNP denotes SerpinB2
T25764 34-37 DT denotes the
T25763 31-33 IN denotes on
T25762 21-30 NN denotes occupancy
T25761 14-20 NN denotes factor
T25760 0-13 NNP denotes Transcription
R18359 T25760 T25761 compound Transcription,factor
R18360 T25761 T25762 compound factor,occupancy
R18361 T25762 T25771 nsubjpass occupancy,determined
R18362 T25763 T25762 prep on,occupancy
R18363 T25764 T25767 det the,promoter
R18364 T25765 T25767 nmod SerpinB2,promoter
R18365 T25766 T25767 amod proximal,promoter
R18366 T25767 T25763 pobj promoter,on
R18367 T25768 T25767 prep in,promoter
R18368 T25769 T25768 pobj vivo,in
R18369 T25770 T25771 auxpass was,determined
R18370 T25771 T25771 ROOT determined,determined
R18371 T25772 T25771 agent by,determined
R18372 T25773 T25774 compound chromatin,immunoprecipitation
R18373 T25774 T25772 pobj immunoprecipitation,by
R18374 T25775 T25776 punct (,ChIP
R18375 T25776 T25774 appos ChIP,immunoprecipitation
R18376 T25777 T25776 punct ),ChIP
R18377 T25778 T25774 conj assay,immunoprecipitation
R18378 T25779 T25771 punct .,determined

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25426 128-133 NN denotes assay
T25425 126-127 -RRB- denotes )
T25424 122-126 NN denotes ChIP
T25423 121-122 -LRB- denotes (
T25422 101-120 NN denotes immunoprecipitation
T25421 91-100 NN denotes chromatin
T25420 88-90 IN denotes by
T25419 77-87 VB denotes determined
T25418 73-76 VB denotes was
T25417 68-72 FW denotes vivo
T25416 65-67 FW denotes in
T25415 56-64 NN denotes promoter
T25414 47-55 JJ denotes proximal
T25410 21-30 NN denotes occupancy
T25409 14-20 NN denotes factor
T25408 0-13 NN denotes Transcription
T25413 38-46 NN denotes SerpinB2
T25412 34-37 DT denotes the
T25411 31-33 IN denotes on
R18149 T25410 T25408 arg1Of occupancy,Transcription
R18150 T25410 T25409 arg1Of occupancy,factor
R18151 T25410 T25411 arg1Of occupancy,on
R18152 T25410 T25418 arg1Of occupancy,was
R18153 T25410 T25419 arg2Of occupancy,determined
R18154 T25415 T25411 arg2Of promoter,on
R18155 T25415 T25412 arg1Of promoter,the
R18156 T25415 T25413 arg1Of promoter,SerpinB2
R18157 T25415 T25414 arg1Of promoter,proximal
R18158 T25415 T25417 arg1Of promoter,vivo
R18159 T25417 T25416 arg1Of vivo,in
R18160 T25419 T25418 arg2Of determined,was
R18161 T25422 T25421 arg1Of immunoprecipitation,chromatin
R18162 T25422 T25423 arg1Of immunoprecipitation,(
R18163 T25424 T25423 arg2Of ChIP,(
R18164 T25425 T25423 arg3Of ),(
R18165 T25426 T25419 arg1Of assay,determined
R18166 T25426 T25420 arg2Of assay,by
R18167 T25426 T25422 arg1Of assay,immunoprecipitation

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T25351 38-46 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T25613 38-46 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T25361 0-13 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription

GO-CC

Id Subject Object Predicate Lexical cue
T25372 91-100 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T25323 0-134 Sentence denotes Transcription factor occupancy on the SerpinB2 proximal promoter in vivo was determined by chromatin immunoprecipitation (ChIP) assay.
T213 0-134 Sentence denotes Transcription factor occupancy on the SerpinB2 proximal promoter in vivo was determined by chromatin immunoprecipitation (ChIP) assay.

simple1

Id Subject Object Predicate Lexical cue
T25385 38-46 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T25603 21-30 Binding denotes occupancy
T25592 38-46 Protein denotes SerpinB2
R18322 T25592 T25603 themeOf SerpinB2,occupancy

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T25658 21-30 Binding denotes occupancy
T25647 38-46 Protein denotes SerpinB2
R18332 T25647 T25658 themeOf SerpinB2,occupancy

DLUT931

Id Subject Object Predicate Lexical cue
T25618 38-46 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25717 91-100 Entity denotes chromatin
T25714 56-72 Entity denotes promoter in vivo
T25709 34-55 Protein denotes the SerpinB2 proximal

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T25663 38-64 Protein denotes SerpinB2 proximal promoter

testone

Id Subject Object Predicate Lexical cue
T25290 56-64 Entity denotes promoter
T25278 38-46 Protein denotes SerpinB2
R18122 T25290 T25278 partOf promoter,SerpinB2

test3

Id Subject Object Predicate Lexical cue
T25310 38-46 Protein denotes SerpinB2
T25309 21-30 Binding denotes occupancy
T25296 38-46 Protein denotes SerpinB2