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PMC:3589482 / 34880-36070 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25957 1189-1190 . denotes .
T25956 1183-1189 NN denotes method
T25955 1176-1182 JJ denotes 2-ΔΔCt
T25954 1172-1175 DT denotes the
T25953 1166-1171 VBG denotes using
T25952 1159-1165 NN denotes signal
T25951 1154-1158 NNP denotes rIgG
T25950 1151-1153 TO denotes to
T25949 1142-1150 JJ denotes relative
T25948 1130-1141 VBN denotes represented
T25947 1126-1129 VBP denotes are
T25946 1121-1125 NNS denotes data
T25945 1117-1120 DT denotes The
T25944 1115-1116 . denotes .
T25943 1108-1115 NN denotes control
T25942 1103-1107 NNP denotes rIgG
T25941 1099-1102 DT denotes the
T25940 1095-1098 CC denotes and
T25939 1093-1094 , denotes ,
T25938 1092-1093 -RRB- denotes )
T25937 1088-1092 CD denotes T217
T25936 1087-1088 -LRB- denotes (
T25935 1085-1086 NN denotes β
T25934 1084-1085 : denotes -
T25933 1077-1084 NNP denotes p-C/EBP
T25932 1075-1076 , denotes ,
T25931 1074-1075 NN denotes β
T25915 979-983 NNP denotes ChIP
T25914 975-978 DT denotes the
T25913 972-974 IN denotes of
T25912 960-971 NN denotes specificity
T25911 956-959 DT denotes the
T25910 953-955 IN denotes of
T25909 942-952 JJ denotes indicative
T25908 940-941 , denotes ,
T25907 933-940 NN denotes control
T25906 929-932 NNP denotes IgG
T25905 922-928 NN denotes rabbit
T25904 918-921 DT denotes the
T25903 912-917 VBG denotes using
T25902 903-911 VBN denotes detected
T25901 899-902 VBD denotes was
T25900 888-898 NN denotes background
T25899 880-887 JJ denotes Minimal
T25898 878-879 . denotes .
T25897 867-878 NN denotes stimulation
T25896 863-866 NNP denotes LPS
T25895 853-862 VBG denotes following
T25894 839-852 NN denotes transcription
T25893 832-838 JJ denotes active
T25892 823-831 VBZ denotes suggests
T25891 814-822 NN denotes promoter
T25890 805-813 NNP denotes SerpinB2
T25889 801-804 DT denotes the
T25888 798-800 TO denotes to
T25887 791-797 NNP denotes RNAPII
T25886 788-790 IN denotes of
T25885 776-787 NN denotes Recruitment
T25884 774-775 . denotes .
T25883 771-774 NN denotes top
T25882 768-770 IN denotes in
T25881 757-767 VBN denotes diagrammed
T25880 754-756 IN denotes as
T25879 752-753 , denotes ,
T25878 749-752 CD denotes +19
T25877 748-749 NN denotes /
T25876 747-748 CD denotes 5
T25875 746-747 CD denotes −
T25874 742-745 CC denotes and
T25873 738-741 CD denotes 315
T25872 737-738 NN denotes −
T25871 736-737 CD denotes /
T25870 733-736 CD denotes 338
T25869 731-732 , denotes ,
T25868 724-731 NNS denotes primers
T25867 706-723 JJ denotes promoter-specific
T25866 697-705 JJ denotes proximal
T25865 688-696 JJ denotes SerpinB2
T25864 681-687 JJ denotes murine
T25863 675-680 VBG denotes using
T25862 668-674 NNS denotes assays
T25861 663-667 NNP denotes ChIP
T25860 660-662 IN denotes in
T25859 651-659 VBN denotes obtained
T25858 643-650 NN denotes pattern
T25857 639-642 NNP denotes PCR
T25856 631-638 JJ denotes Typical
T25855 629-630 -RRB- denotes )
T25854 628-629 NNP denotes A
T25853 627-628 -LRB- denotes (
T25852 625-626 . denotes .
T25851 618-625 NN denotes control
T25850 616-617 -RRB- denotes )
T25849 612-616 NNP denotes rIgG
T25778 265-270 NN denotes assay
T25848 611-612 -LRB- denotes (
T25847 607-610 NNP denotes IgG
T25846 600-606 NN denotes rabbit
T25845 598-599 DT denotes a
T25844 595-597 CC denotes or
T25843 593-594 , denotes ,
T25842 592-593 -RRB- denotes )
T25841 586-592 NNP denotes RNAPII
T25840 585-586 -LRB- denotes (
T25839 582-584 NNP denotes II
T25838 571-581 NNP denotes Polymerase
T25837 567-570 NNP denotes RNA
T25836 565-566 , denotes ,
T25835 564-565 -RRB- denotes )
T25834 560-564 CD denotes T217
T25833 559-560 -LRB- denotes (
T25832 557-558 NN denotes β
T25831 556-557 : denotes -
T25830 549-556 NNP denotes p-C/EBP
T25829 547-548 , denotes ,
T25828 546-547 NN denotes β
T25827 545-546 : denotes -
T25826 540-545 NNP denotes C/EBP
T25825 532-539 IN denotes against
T25824 521-531 NNS denotes antibodies
T25823 516-520 IN denotes with
T25822 497-515 VBN denotes immunoprecipitated
T25821 493-496 VBD denotes was
T25820 491-492 -RRB- denotes )
T25819 489-491 NN denotes ng
T25818 485-488 CD denotes 700
T25817 481-484 CD denotes 600
T25816 480-481 -LRB- denotes (
T25815 470-479 NN denotes chromatin
T25814 462-469 JJ denotes Soluble
T25813 460-461 . denotes .
T25812 459-460 -RRB- denotes )
T25811 455-459 CD denotes T217
T25810 454-455 -LRB- denotes (
T25809 452-453 NN denotes β
T25808 451-452 : denotes -
T25807 444-451 NN denotes p-C/EBP
T25806 441-443 CC denotes or
T25805 439-440 NN denotes β
T25804 438-439 : denotes -
T25803 433-438 NNP denotes C/EBP
T25802 425-432 IN denotes against
T25801 414-424 NNS denotes antibodies
T25800 408-413 VBG denotes using
T25799 398-407 VBN denotes performed
T25798 378-397 NN denotes immunoprecipitation
T25797 368-377 NN denotes chromatin
T25796 364-367 CC denotes and
T25795 358-363 NNS denotes times
T25794 348-357 JJ denotes indicated
T25793 344-347 DT denotes the
T25792 340-343 IN denotes for
T25791 336-339 NNP denotes LPS
T25790 333-335 IN denotes of
T25789 325-332 NN denotes absence
T25788 322-324 CC denotes or
T25787 313-321 NN denotes presence
T25786 309-312 DT denotes the
T25785 306-308 IN denotes in
T25784 298-305 VBN denotes treated
T25783 293-297 VBD denotes were
T25782 281-292 NNS denotes macrophages
T25780 272-278 CD denotes RAW264
T25779 270-271 . denotes .
T25777 263-264 -RRB- denotes )
T25776 259-263 NNP denotes ChIP
T25775 258-259 -LRB- denotes (
T25774 238-257 NN denotes immunoprecipitation
T25773 228-237 NN denotes chromatin
T25772 225-227 IN denotes by
T25771 214-224 VBN denotes determined
T25770 210-213 VBD denotes was
T25769 205-209 NN denotes vivo
T25768 202-204 IN denotes in
T25767 193-201 NN denotes promoter
T25766 184-192 JJ denotes proximal
T25765 175-183 NNP denotes SerpinB2
T25764 171-174 DT denotes the
T25763 168-170 IN denotes on
T25762 158-167 NN denotes occupancy
T25761 151-157 NN denotes factor
T25760 137-150 NNP denotes Transcription
T25759 135-136 . denotes .
T25758 131-135 NN denotes vivo
T25757 128-130 IN denotes in
T25756 119-127 NN denotes promoter
T25755 110-118 NNP denotes SerpinB2
T25754 103-109 NN denotes murine
T25753 99-102 DT denotes the
T25752 96-98 TO denotes to
T25751 90-95 NNP denotes βT217
T25750 89-90 : denotes -
T25749 84-89 NNP denotes C/EBP
T25748 80-83 CC denotes and
T25747 78-79 NN denotes β
T25746 77-78 : denotes -
T25745 72-77 NNP denotes C/EBP
T25744 69-71 IN denotes of
T25743 57-68 NN denotes recruitment
T25742 44-56 NNP denotes Differential
T25930 1073-1074 : denotes -
T25929 1068-1073 NNP denotes C/EBP
T25928 1060-1067 IN denotes against
T25927 1049-1059 NNS denotes antibodies
T25926 1044-1048 IN denotes with
T25925 1025-1043 VBN denotes immunoprecipitated
T25924 1015-1024 NN denotes chromatin
T25923 1012-1014 IN denotes of
T25922 1003-1011 NN denotes analysis
T25921 998-1002 NNP denotes qPCR
T25920 996-997 -RRB- denotes )
T25919 995-996 NNP denotes B
T25918 994-995 -LRB- denotes (
T25917 992-993 . denotes .
T25916 984-992 NN denotes reaction
T25781 278-280 CD denotes .7
R18341 T25742 T25743 compound Differential,recruitment
R18342 T25743 T25743 ROOT recruitment,recruitment
R18343 T25744 T25743 prep of,recruitment
R18344 T25745 T25744 pobj C/EBP,of
R18345 T25746 T25743 punct -,recruitment
R18346 T25747 T25743 conj β,recruitment
R18347 T25748 T25747 cc and,β
R18348 T25749 T25751 compound C/EBP,βT217
R18349 T25750 T25751 punct -,βT217
R18350 T25751 T25751 ROOT βT217,βT217
R18351 T25752 T25751 prep to,βT217
R18352 T25753 T25756 det the,promoter
R18353 T25754 T25756 compound murine,promoter
R18354 T25755 T25756 compound SerpinB2,promoter
R18355 T25756 T25752 pobj promoter,to
R18356 T25757 T25756 prep in,promoter
R18357 T25758 T25757 pobj vivo,in
R18358 T25759 T25751 punct .,βT217
R18359 T25760 T25761 compound Transcription,factor
R18360 T25761 T25762 compound factor,occupancy
R18361 T25762 T25771 nsubjpass occupancy,determined
R18362 T25763 T25762 prep on,occupancy
R18363 T25764 T25767 det the,promoter
R18364 T25765 T25767 nmod SerpinB2,promoter
R18365 T25766 T25767 amod proximal,promoter
R18366 T25767 T25763 pobj promoter,on
R18367 T25768 T25767 prep in,promoter
R18368 T25769 T25768 pobj vivo,in
R18369 T25770 T25771 auxpass was,determined
R18370 T25771 T25771 ROOT determined,determined
R18371 T25772 T25771 agent by,determined
R18372 T25773 T25774 compound chromatin,immunoprecipitation
R18373 T25774 T25772 pobj immunoprecipitation,by
R18374 T25775 T25776 punct (,ChIP
R18375 T25776 T25774 appos ChIP,immunoprecipitation
R18376 T25777 T25776 punct ),ChIP
R18377 T25778 T25774 conj assay,immunoprecipitation
R18378 T25779 T25771 punct .,determined
R18379 T25780 T25782 nummod RAW264,macrophages
R18380 T25781 T25782 nummod .7,macrophages
R18381 T25782 T25784 nsubjpass macrophages,treated
R18382 T25783 T25784 auxpass were,treated
R18383 T25784 T25784 ROOT treated,treated
R18384 T25785 T25784 prep in,treated
R18385 T25786 T25787 det the,presence
R18386 T25787 T25785 pobj presence,in
R18387 T25788 T25787 cc or,presence
R18388 T25789 T25787 conj absence,presence
R18389 T25790 T25789 prep of,absence
R18390 T25791 T25790 pobj LPS,of
R18391 T25792 T25784 prep for,treated
R18392 T25793 T25795 det the,times
R18393 T25794 T25795 amod indicated,times
R18394 T25795 T25792 pobj times,for
R18395 T25796 T25795 cc and,times
R18396 T25797 T25798 compound chromatin,immunoprecipitation
R18397 T25798 T25799 nsubj immunoprecipitation,performed
R18398 T25799 T25784 advcl performed,treated
R18399 T25800 T25799 advcl using,performed
R18400 T25801 T25800 dobj antibodies,using
R18401 T25802 T25800 prep against,using
R18402 T25803 T25802 pobj C/EBP,against
R18403 T25804 T25805 punct -,β
R18404 T25805 T25800 conj β,using
R18405 T25806 T25805 cc or,β
R18406 T25807 T25805 conj p-C/EBP,β
R18407 T25808 T25809 punct -,β
R18408 T25809 T25805 appos β,β
R18409 T25810 T25809 punct (,β
R18410 T25811 T25809 appos T217,β
R18411 T25812 T25809 punct ),β
R18412 T25813 T25784 punct .,treated
R18413 T25814 T25815 amod Soluble,chromatin
R18414 T25815 T25822 nsubjpass chromatin,immunoprecipitated
R18415 T25816 T25819 punct (,ng
R18416 T25817 T25818 dep 600,700
R18417 T25818 T25819 nummod 700,ng
R18418 T25819 T25815 appos ng,chromatin
R18419 T25820 T25819 punct ),ng
R18420 T25821 T25822 auxpass was,immunoprecipitated
R18421 T25822 T25822 ROOT immunoprecipitated,immunoprecipitated
R18422 T25823 T25822 prep with,immunoprecipitated
R18423 T25824 T25823 pobj antibodies,with
R18424 T25825 T25824 prep against,antibodies
R18425 T25826 T25825 pobj C/EBP,against
R18426 T25827 T25828 punct -,β
R18427 T25828 T25822 advcl β,immunoprecipitated
R18428 T25829 T25828 punct ",",β
R18429 T25830 T25832 compound p-C/EBP,β
R18430 T25831 T25832 punct -,β
R18431 T25832 T25828 appos β,β
R18432 T25833 T25832 punct (,β
R18433 T25834 T25832 appos T217,β
R18434 T25835 T25832 punct ),β
R18435 T25836 T25832 punct ",",β
R18436 T25837 T25839 compound RNA,II
R18437 T25838 T25839 compound Polymerase,II
R18438 T25839 T25832 appos II,β
R18439 T25840 T25839 punct (,II
R18440 T25841 T25839 appos RNAPII,II
R18441 T25842 T25839 punct ),II
R18442 T25843 T25839 punct ",",II
R18443 T25844 T25832 cc or,β
R18444 T25845 T25846 det a,rabbit
R18445 T25846 T25851 compound rabbit,control
R18446 T25847 T25851 compound IgG,control
R18447 T25848 T25849 punct (,rIgG
R18448 T25849 T25847 appos rIgG,IgG
R18449 T25850 T25849 punct ),rIgG
R18450 T25851 T25832 conj control,β
R18451 T25852 T25822 punct .,immunoprecipitated
R18452 T25853 T25854 punct (,A
R18453 T25854 T25854 ROOT A,A
R18454 T25855 T25854 punct ),A
R18455 T25856 T25858 amod Typical,pattern
R18456 T25857 T25858 compound PCR,pattern
R18457 T25858 T25859 nsubj pattern,obtained
R18458 T25859 T25859 ROOT obtained,obtained
R18459 T25860 T25859 prep in,obtained
R18460 T25861 T25862 compound ChIP,assays
R18461 T25862 T25860 pobj assays,in
R18462 T25863 T25859 advcl using,obtained
R18463 T25864 T25868 amod murine,primers
R18464 T25865 T25868 amod SerpinB2,primers
R18465 T25866 T25868 amod proximal,primers
R18466 T25867 T25868 amod promoter-specific,primers
R18467 T25868 T25863 dobj primers,using
R18468 T25869 T25872 punct ",",−
R18469 T25870 T25871 compound 338,/
R18470 T25871 T25872 nsubj /,−
R18471 T25872 T25872 ROOT −,−
R18472 T25873 T25872 nummod 315,−
R18473 T25874 T25872 cc and,−
R18474 T25875 T25877 meta −,/
R18475 T25876 T25877 nummod 5,/
R18476 T25877 T25872 conj /,−
R18477 T25878 T25877 nummod +19,/
R18478 T25879 T25877 punct ",",/
R18479 T25880 T25881 mark as,diagrammed
R18480 T25881 T25872 amod diagrammed,−
R18481 T25882 T25881 prep in,diagrammed
R18482 T25883 T25882 pobj top,in
R18483 T25884 T25859 punct .,obtained
R18484 T25885 T25892 nsubj Recruitment,suggests
R18485 T25886 T25885 prep of,Recruitment
R18486 T25887 T25886 pobj RNAPII,of
R18487 T25888 T25885 prep to,Recruitment
R18488 T25889 T25891 det the,promoter
R18489 T25890 T25891 compound SerpinB2,promoter
R18490 T25891 T25888 pobj promoter,to
R18491 T25892 T25892 ROOT suggests,suggests
R18492 T25893 T25894 amod active,transcription
R18493 T25894 T25892 dobj transcription,suggests
R18494 T25895 T25894 acl following,transcription
R18495 T25896 T25897 compound LPS,stimulation
R18496 T25897 T25895 dobj stimulation,following
R18497 T25898 T25892 punct .,suggests
R18498 T25899 T25900 amod Minimal,background
R18499 T25900 T25902 nsubjpass background,detected
R18500 T25901 T25902 auxpass was,detected
R18501 T25902 T25902 ROOT detected,detected
R18502 T25903 T25902 advcl using,detected
R18503 T25904 T25907 det the,control
R18504 T25905 T25907 compound rabbit,control
R18505 T25906 T25907 compound IgG,control
R18506 T25907 T25903 dobj control,using
R18507 T25908 T25902 punct ",",detected
R18508 T25909 T25902 advcl indicative,detected
R18509 T25910 T25909 prep of,indicative
R18510 T25911 T25912 det the,specificity
R18511 T25912 T25910 pobj specificity,of
R18512 T25913 T25912 prep of,specificity
R18513 T25914 T25916 det the,reaction
R18514 T25915 T25916 compound ChIP,reaction
R18515 T25916 T25913 pobj reaction,of
R18516 T25917 T25902 punct .,detected
R18517 T25918 T25922 punct (,analysis
R18518 T25919 T25922 nmod B,analysis
R18519 T25920 T25919 punct ),B
R18520 T25921 T25922 compound qPCR,analysis
R18521 T25922 T25922 ROOT analysis,analysis
R18522 T25923 T25922 prep of,analysis
R18523 T25924 T25923 pobj chromatin,of
R18524 T25925 T25922 dep immunoprecipitated,analysis
R18525 T25926 T25925 prep with,immunoprecipitated
R18526 T25927 T25926 pobj antibodies,with
R18527 T25928 T25927 prep against,antibodies
R18528 T25929 T25928 pobj C/EBP,against
R18529 T25930 T25931 punct -,β
R18530 T25931 T25922 appos β,analysis
R18531 T25932 T25931 punct ",",β
R18532 T25933 T25935 compound p-C/EBP,β
R18533 T25934 T25935 punct -,β
R18534 T25935 T25931 appos β,β
R18535 T25936 T25935 punct (,β
R18536 T25937 T25935 appos T217,β
R18537 T25938 T25935 punct ),β
R18538 T25939 T25931 punct ",",β
R18539 T25940 T25931 cc and,β
R18540 T25941 T25943 det the,control
R18541 T25942 T25943 compound rIgG,control
R18542 T25943 T25931 conj control,β
R18543 T25944 T25922 punct .,analysis
R18544 T25945 T25946 det The,data
R18545 T25946 T25948 nsubjpass data,represented
R18546 T25947 T25948 auxpass are,represented
R18547 T25948 T25948 ROOT represented,represented
R18548 T25949 T25948 oprd relative,represented
R18549 T25950 T25948 prep to,represented
R18550 T25951 T25952 compound rIgG,signal
R18551 T25952 T25950 pobj signal,to
R18552 T25953 T25948 advcl using,represented
R18553 T25954 T25956 det the,method
R18554 T25955 T25956 amod 2-ΔΔCt,method
R18555 T25956 T25953 dobj method,using
R18556 T25957 T25948 punct .,represented

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25577 1183-1189 NN denotes method
T25576 1176-1182 NN denotes 2-ΔΔCt
T25575 1172-1175 DT denotes the
T25574 1166-1171 VB denotes using
T25573 1159-1165 NN denotes signal
T25572 1154-1158 NN denotes rIgG
T25571 1151-1153 TO denotes to
T25570 1142-1150 JJ denotes relative
T25569 1130-1141 VB denotes represented
T25568 1126-1129 VB denotes are
T25567 1121-1125 NN denotes data
T25566 1117-1120 DT denotes The
T25565 1108-1115 NN denotes control
T25564 1103-1107 NN denotes rIgG
T25563 1099-1102 DT denotes the
T25562 1095-1098 CC denotes and
T25561 1093-1094 -COMMA- denotes ,
T25560 1092-1093 -RRB- denotes )
T25559 1088-1092 NN denotes T217
T25558 1087-1088 -LRB- denotes (
T25557 1077-1086 NN denotes p-C/EBP-β
T25556 1075-1076 -COMMA- denotes ,
T25555 1068-1075 NN denotes C/EBP-β
T25554 1060-1067 IN denotes against
T25553 1049-1059 NN denotes antibodies
T25552 1044-1048 IN denotes with
T25551 1025-1043 VB denotes immunoprecipitated
T25550 1015-1024 NN denotes chromatin
T25549 1012-1014 IN denotes of
T25548 1003-1011 NN denotes analysis
T25547 998-1002 NN denotes qPCR
T25546 996-997 -RRB- denotes )
T25545 995-996 NN denotes B
T25544 994-995 -LRB- denotes (
T25543 984-993 NN denotes reaction.
T25542 979-983 NN denotes ChIP
T25541 975-978 DT denotes the
T25540 972-974 IN denotes of
T25539 960-971 NN denotes specificity
T25538 956-959 DT denotes the
T25537 953-955 IN denotes of
T25536 942-952 JJ denotes indicative
T25535 940-941 -COMMA- denotes ,
T25534 933-940 NN denotes control
T25533 929-932 NN denotes IgG
T25532 922-928 NN denotes rabbit
T25531 918-921 DT denotes the
T25530 912-917 VB denotes using
T25529 903-911 VB denotes detected
T25528 899-902 VB denotes was
T25527 888-898 NN denotes background
T25526 880-887 JJ denotes Minimal
T25525 867-878 NN denotes stimulation
T25524 863-866 NN denotes LPS
T25523 853-862 VB denotes following
T25522 839-852 NN denotes transcription
T25521 832-838 JJ denotes active
T25520 823-831 VB denotes suggests
T25519 814-822 NN denotes promoter
T25518 805-813 NN denotes SerpinB2
T25517 801-804 DT denotes the
T25516 798-800 TO denotes to
T25515 791-797 NN denotes RNAPII
T25514 788-790 IN denotes of
T25513 776-787 NN denotes Recruitment
T25512 771-774 NN denotes top
T25511 768-770 IN denotes in
T25510 757-767 VB denotes diagrammed
T25509 754-756 IN denotes as
T25508 752-753 -COMMA- denotes ,
T25507 746-752 CD denotes −5/+19
T25506 742-745 CC denotes and
T25505 733-741 CD denotes 338/−315
T25504 731-732 -COMMA- denotes ,
T25503 724-731 NN denotes primers
T25502 706-723 JJ denotes promoter-specific
T25501 697-705 JJ denotes proximal
T25500 688-696 NN denotes SerpinB2
T25499 681-687 JJ denotes murine
T25498 675-680 VB denotes using
T25497 668-674 NN denotes assays
T25496 663-667 NN denotes ChIP
T25495 660-662 IN denotes in
T25494 651-659 VB denotes obtained
T25493 643-650 NN denotes pattern
T25492 639-642 NN denotes PCR
T25491 631-638 JJ denotes Typical
T25490 629-630 -RRB- denotes )
T25489 628-629 NN denotes A
T25488 627-628 -LRB- denotes (
T25487 618-626 NN denotes control.
T25486 616-617 -RRB- denotes )
T25485 612-616 NN denotes rIgG
T25484 611-612 -LRB- denotes (
T25483 607-610 NN denotes IgG
T25482 600-606 NN denotes rabbit
T25481 598-599 DT denotes a
T25480 595-597 CC denotes or
T25479 593-594 -COMMA- denotes ,
T25478 592-593 -RRB- denotes )
T25477 586-592 NN denotes RNAPII
T25476 585-586 -LRB- denotes (
T25475 582-584 CD denotes II
T25474 571-581 NN denotes Polymerase
T25473 567-570 NN denotes RNA
T25472 565-566 -COMMA- denotes ,
T25471 564-565 -RRB- denotes )
T25470 560-564 NN denotes T217
T25469 559-560 -LRB- denotes (
T25468 549-558 NN denotes p-C/EBP-β
T25467 547-548 -COMMA- denotes ,
T25466 540-547 NN denotes C/EBP-β
T25465 532-539 IN denotes against
T25464 521-531 NN denotes antibodies
T25463 516-520 IN denotes with
T25462 497-515 VB denotes immunoprecipitated
T25461 493-496 VB denotes was
T25460 491-492 -RRB- denotes )
T25459 489-491 NN denotes ng
T25458 481-488 CD denotes 600–700
T25457 480-481 -LRB- denotes (
T25456 470-479 NN denotes chromatin
T25455 462-469 JJ denotes Soluble
T25454 459-460 -RRB- denotes )
T25453 455-459 NN denotes T217
T25452 454-455 -LRB- denotes (
T25451 444-453 NN denotes p-C/EBP-β
T25450 441-443 CC denotes or
T25449 433-440 NN denotes C/EBP-β
T25448 425-432 IN denotes against
T25447 414-424 NN denotes antibodies
T25446 408-413 VB denotes using
T25445 398-407 VB denotes performed
T25444 378-397 NN denotes immunoprecipitation
T25443 368-377 NN denotes chromatin
T25442 364-367 CC denotes and
T25441 358-363 NN denotes times
T25440 348-357 VB denotes indicated
T25439 344-347 DT denotes the
T25438 340-343 IN denotes for
T25437 336-339 NN denotes LPS
T25436 333-335 IN denotes of
T25435 325-332 NN denotes absence
T25434 322-324 CC denotes or
T25433 313-321 NN denotes presence
T25432 309-312 DT denotes the
T25431 306-308 IN denotes in
T25430 298-305 VB denotes treated
T25429 293-297 VB denotes were
T25428 281-292 NN denotes macrophages
T25427 272-280 NN denotes RAW264.7
T25426 265-270 NN denotes assay
T25425 263-264 -RRB- denotes )
T25424 259-263 NN denotes ChIP
T25423 258-259 -LRB- denotes (
T25422 238-257 NN denotes immunoprecipitation
T25421 228-237 NN denotes chromatin
T25420 225-227 IN denotes by
T25419 214-224 VB denotes determined
T25418 210-213 VB denotes was
T25417 205-209 FW denotes vivo
T25416 202-204 FW denotes in
T25415 193-201 NN denotes promoter
T25414 184-192 JJ denotes proximal
T25410 158-167 NN denotes occupancy
T25409 151-157 NN denotes factor
T25408 137-150 NN denotes Transcription
T25407 131-135 FW denotes vivo
T25406 128-130 FW denotes in
T25405 119-127 NN denotes promoter
T25404 110-118 NN denotes SerpinB2
T25403 103-109 JJ denotes murine
T25402 99-102 DT denotes the
T25401 96-98 TO denotes to
T25400 84-95 NN denotes C/EBP-βT217
T25399 80-83 CC denotes and
T25398 72-79 NN denotes C/EBP-β
T25397 69-71 IN denotes of
T25396 57-68 NN denotes recruitment
T25395 44-56 JJ denotes Differential
T25413 175-183 NN denotes SerpinB2
T25412 171-174 DT denotes the
T25411 168-170 IN denotes on
R18137 T25396 T25395 arg1Of recruitment,Differential
R18138 T25396 T25397 arg1Of recruitment,of
R18139 T25396 T25401 arg1Of recruitment,to
R18140 T25396 T25407 arg1Of recruitment,vivo
R18141 T25398 T25399 arg1Of C/EBP-β,and
R18142 T25399 T25397 arg2Of and,of
R18143 T25400 T25399 arg2Of C/EBP-βT217,and
R18144 T25405 T25401 arg2Of promoter,to
R18145 T25405 T25402 arg1Of promoter,the
R18146 T25405 T25403 arg1Of promoter,murine
R18147 T25405 T25404 arg1Of promoter,SerpinB2
R18148 T25407 T25406 arg1Of vivo,in
R18149 T25410 T25408 arg1Of occupancy,Transcription
R18150 T25410 T25409 arg1Of occupancy,factor
R18151 T25410 T25411 arg1Of occupancy,on
R18152 T25410 T25418 arg1Of occupancy,was
R18153 T25410 T25419 arg2Of occupancy,determined
R18154 T25415 T25411 arg2Of promoter,on
R18155 T25415 T25412 arg1Of promoter,the
R18156 T25415 T25413 arg1Of promoter,SerpinB2
R18157 T25415 T25414 arg1Of promoter,proximal
R18158 T25415 T25417 arg1Of promoter,vivo
R18159 T25417 T25416 arg1Of vivo,in
R18160 T25419 T25418 arg2Of determined,was
R18161 T25422 T25421 arg1Of immunoprecipitation,chromatin
R18162 T25422 T25423 arg1Of immunoprecipitation,(
R18163 T25424 T25423 arg2Of ChIP,(
R18164 T25425 T25423 arg3Of ),(
R18165 T25426 T25419 arg1Of assay,determined
R18166 T25426 T25420 arg2Of assay,by
R18167 T25426 T25422 arg1Of assay,immunoprecipitation
R18168 T25428 T25427 arg1Of macrophages,RAW264.7
R18169 T25428 T25429 arg1Of macrophages,were
R18170 T25428 T25430 arg2Of macrophages,treated
R18171 T25430 T25429 arg2Of treated,were
R18172 T25430 T25431 arg1Of treated,in
R18173 T25430 T25446 modOf treated,using
R18174 T25433 T25434 arg1Of presence,or
R18175 T25434 T25431 arg2Of or,in
R18176 T25434 T25432 arg1Of or,the
R18177 T25434 T25436 arg1Of or,of
R18178 T25434 T25438 arg1Of or,for
R18179 T25435 T25434 arg2Of absence,or
R18180 T25437 T25436 arg2Of LPS,of
R18181 T25441 T25442 arg1Of times,and
R18182 T25443 T25442 arg2Of chromatin,and
R18183 T25444 T25438 arg2Of immunoprecipitation,for
R18184 T25444 T25439 arg1Of immunoprecipitation,the
R18185 T25444 T25440 arg2Of immunoprecipitation,indicated
R18186 T25444 T25441 arg1Of immunoprecipitation,times
R18187 T25444 T25443 arg1Of immunoprecipitation,chromatin
R18188 T25444 T25445 arg2Of immunoprecipitation,performed
R18189 T25446 T25448 arg1Of using,against
R18190 T25447 T25446 arg2Of antibodies,using
R18191 T25449 T25450 arg1Of C/EBP-β,or
R18192 T25450 T25448 arg2Of or,against
R18193 T25450 T25452 arg1Of or,(
R18194 T25451 T25450 arg2Of p-C/EBP-β,or
R18195 T25453 T25452 arg2Of T217,(
R18196 T25454 T25452 arg3Of ),(
R18197 T25456 T25455 arg1Of chromatin,Soluble
R18198 T25456 T25457 arg1Of chromatin,(
R18199 T25456 T25461 arg1Of chromatin,was
R18200 T25456 T25462 arg2Of chromatin,immunoprecipitated
R18201 T25459 T25457 arg2Of ng,(
R18202 T25459 T25458 arg1Of ng,600–700
R18203 T25460 T25457 arg3Of ),(
R18204 T25462 T25461 arg2Of immunoprecipitated,was
R18205 T25462 T25463 arg1Of immunoprecipitated,with
R18206 T25464 T25463 arg2Of antibodies,with
R18207 T25464 T25465 arg1Of antibodies,against
R18208 T25466 T25467 arg1Of C/EBP-β,","
R18209 T25466 T25472 arg1Of C/EBP-β,","
R18210 T25468 T25467 arg2Of p-C/EBP-β,","
R18211 T25468 T25469 arg1Of p-C/EBP-β,(
R18212 T25470 T25469 arg2Of T217,(
R18213 T25471 T25469 arg3Of ),(
R18214 T25472 T25480 arg1Of ",",or
R18215 T25474 T25472 arg2Of Polymerase,","
R18216 T25474 T25473 arg1Of Polymerase,RNA
R18217 T25474 T25475 arg1Of Polymerase,II
R18218 T25474 T25476 arg1Of Polymerase,(
R18219 T25477 T25476 arg2Of RNAPII,(
R18220 T25478 T25476 arg3Of ),(
R18221 T25480 T25465 arg2Of or,against
R18222 T25480 T25479 arg1Of or,","
R18223 T25485 T25484 arg2Of rIgG,(
R18224 T25486 T25484 arg3Of ),(
R18225 T25487 T25482 arg1Of control.,rabbit
R18226 T25487 T25483 arg1Of control.,IgG
R18227 T25487 T25484 arg1Of control.,(
R18228 T25487 T25488 arg1Of control.,(
R18229 T25489 T25488 arg2Of A,(
R18230 T25490 T25488 arg3Of ),(
R18231 T25493 T25480 arg2Of pattern,or
R18232 T25493 T25481 arg1Of pattern,a
R18233 T25493 T25487 arg1Of pattern,control.
R18234 T25493 T25491 arg1Of pattern,Typical
R18235 T25493 T25492 arg1Of pattern,PCR
R18236 T25493 T25494 arg2Of pattern,obtained
R18237 T25494 T25495 arg1Of obtained,in
R18238 T25494 T25508 arg1Of obtained,","
R18239 T25494 T25509 arg1Of obtained,as
R18240 T25497 T25495 arg2Of assays,in
R18241 T25497 T25496 arg1Of assays,ChIP
R18242 T25497 T25498 arg1Of assays,using
R18243 T25503 T25498 arg2Of primers,using
R18244 T25503 T25499 arg1Of primers,murine
R18245 T25503 T25500 arg1Of primers,SerpinB2
R18246 T25503 T25501 arg1Of primers,proximal
R18247 T25503 T25502 arg1Of primers,promoter-specific
R18248 T25503 T25504 arg1Of primers,","
R18249 T25505 T25506 arg1Of 338/−315,and
R18250 T25506 T25504 arg2Of and,","
R18251 T25507 T25506 arg2Of −5/+19,and
R18252 T25510 T25509 arg2Of diagrammed,as
R18253 T25510 T25511 arg1Of diagrammed,in
R18254 T25512 T25511 arg2Of top,in
R18255 T25513 T25514 arg1Of Recruitment,of
R18256 T25513 T25516 arg1Of Recruitment,to
R18257 T25513 T25520 arg1Of Recruitment,suggests
R18258 T25515 T25514 arg2Of RNAPII,of
R18259 T25519 T25516 arg2Of promoter,to
R18260 T25519 T25517 arg1Of promoter,the
R18261 T25519 T25518 arg1Of promoter,SerpinB2
R18262 T25520 T25523 arg1Of suggests,following
R18263 T25522 T25520 arg2Of transcription,suggests
R18264 T25522 T25521 arg1Of transcription,active
R18265 T25525 T25523 arg2Of stimulation,following
R18266 T25525 T25524 arg1Of stimulation,LPS
R18267 T25527 T25526 arg1Of background,Minimal
R18268 T25527 T25528 arg1Of background,was
R18269 T25527 T25529 arg2Of background,detected
R18270 T25527 T25530 arg1Of background,using
R18271 T25529 T25528 arg2Of detected,was
R18272 T25530 T25529 arg3Of using,detected
R18273 T25530 T25535 arg1Of using,","
R18274 T25530 T25536 arg1Of using,indicative
R18275 T25534 T25530 arg2Of control,using
R18276 T25534 T25531 arg1Of control,the
R18277 T25534 T25532 arg1Of control,rabbit
R18278 T25534 T25533 arg1Of control,IgG
R18279 T25536 T25537 arg1Of indicative,of
R18280 T25539 T25537 arg2Of specificity,of
R18281 T25539 T25538 arg1Of specificity,the
R18282 T25539 T25540 arg1Of specificity,of
R18283 T25539 T25549 arg1Of specificity,of
R18284 T25545 T25544 arg2Of B,(
R18285 T25546 T25544 arg3Of ),(
R18286 T25548 T25540 arg2Of analysis,of
R18287 T25548 T25541 arg1Of analysis,the
R18288 T25548 T25542 arg1Of analysis,ChIP
R18289 T25548 T25543 arg1Of analysis,reaction.
R18290 T25548 T25544 arg1Of analysis,(
R18291 T25548 T25547 arg1Of analysis,qPCR
R18292 T25550 T25549 arg2Of chromatin,of
R18293 T25550 T25551 arg2Of chromatin,immunoprecipitated
R18294 T25551 T25552 arg1Of immunoprecipitated,with
R18295 T25553 T25552 arg2Of antibodies,with
R18296 T25553 T25554 arg1Of antibodies,against
R18297 T25555 T25556 arg1Of C/EBP-β,","
R18298 T25555 T25562 arg1Of C/EBP-β,and
R18299 T25557 T25556 arg2Of p-C/EBP-β,","
R18300 T25557 T25558 arg1Of p-C/EBP-β,(
R18301 T25559 T25558 arg2Of T217,(
R18302 T25560 T25558 arg3Of ),(
R18303 T25562 T25554 arg2Of and,against
R18304 T25562 T25561 arg1Of and,","
R18305 T25565 T25562 arg2Of control,and
R18306 T25565 T25563 arg1Of control,the
R18307 T25565 T25564 arg1Of control,rIgG
R18308 T25567 T25566 arg1Of data,The
R18309 T25567 T25568 arg1Of data,are
R18310 T25567 T25569 arg2Of data,represented
R18311 T25569 T25568 arg2Of represented,are
R18312 T25569 T25571 arg1Of represented,to
R18313 T25571 T25570 arg1Of to,relative
R18314 T25573 T25571 arg2Of signal,to
R18315 T25573 T25572 arg1Of signal,rIgG
R18316 T25573 T25574 arg1Of signal,using
R18317 T25577 T25574 arg2Of method,using
R18318 T25577 T25575 arg1Of method,the
R18319 T25577 T25576 arg1Of method,2-ΔΔCt

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T25351 175-183 Protein denotes SerpinB2
T25350 110-118 Protein denotes SerpinB2
T25349 72-79 Protein denotes C/EBP-β
T25360 1154-1158 Protein denotes rIgG
T25359 1077-1093 Protein denotes p-C/EBP-β (T217)
T25358 1068-1075 Protein denotes C/EBP-β
T25357 805-813 Protein denotes SerpinB2
T25356 688-696 Protein denotes SerpinB2
T25355 549-565 Protein denotes p-C/EBP-β (T217)
T25354 540-547 Protein denotes C/EBP-β
T25353 444-460 Protein denotes p-C/EBP-β (T217)
T25352 433-440 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T25615 805-813 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T25614 688-696 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T25613 175-183 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T25612 110-118 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T25611 1079-1086 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25610 1068-1075 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25609 551-558 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25608 540-547 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25607 446-453 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25606 433-440 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25605 72-79 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-BP

Id Subject Object Predicate Lexical cue
T25366 1159-1165 http://purl.obolibrary.org/obo/GO_0023052 denotes signal
T25365 567-584 http://purl.obolibrary.org/obo/GO_0003899 denotes RNA Polymerase II
T25364 567-584 http://purl.obolibrary.org/obo/GO_0001055 denotes RNA Polymerase II
T25363 567-584 http://purl.obolibrary.org/obo/GO_1990114 denotes RNA Polymerase II
T25362 839-852 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T25361 137-150 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription

GO-MF

Id Subject Object Predicate Lexical cue
T25371 567-584 http://purl.obolibrary.org/obo/GO_0003899 denotes RNA Polymerase II
T25370 567-584 http://purl.obolibrary.org/obo/GO_0001055 denotes RNA Polymerase II
T25369 1049-1059 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T25368 521-531 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T25367 414-424 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T25382 567-584 http://purl.obolibrary.org/obo/GO_0005665 denotes RNA Polymerase II
T25381 1049-1059 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T25380 521-531 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T25379 414-424 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T25378 1049-1059 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T25377 521-531 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T25376 414-424 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T25375 1015-1024 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T25374 470-479 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T25373 368-377 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T25372 228-237 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T25328 1117-1190 Sentence denotes The data are represented relative to rIgG signal using the 2-ΔΔCt method.
T25327 880-1116 Sentence denotes Minimal background was detected using the rabbit IgG control, indicative of the specificity of the ChIP reaction. (B) qPCR analysis of chromatin immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), and the rIgG control.
T25326 776-879 Sentence denotes Recruitment of RNAPII to the SerpinB2 promoter suggests active transcription following LPS stimulation.
T25325 462-775 Sentence denotes Soluble chromatin (600–700 ng) was immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), RNA Polymerase II (RNAPII), or a rabbit IgG (rIgG) control. (A) Typical PCR pattern obtained in ChIP assays using murine SerpinB2 proximal promoter-specific primers, 338/−315 and −5/+19, as diagrammed in top.
T25324 272-461 Sentence denotes RAW264.7 macrophages were treated in the presence or absence of LPS for the indicated times and chromatin immunoprecipitation performed using antibodies against C/EBP-β or p-C/EBP-β (T217).
T25323 137-271 Sentence denotes Transcription factor occupancy on the SerpinB2 proximal promoter in vivo was determined by chromatin immunoprecipitation (ChIP) assay.
T25322 44-136 Sentence denotes Differential recruitment of C/EBP-β and C/EBP-βT217 to the murine SerpinB2 promoter in vivo.
T212 0-136 Sentence denotes 10.1371/journal.pone.0057855.g007 Figure 7 Differential recruitment of C/EBP-β and C/EBP-βT217 to the murine SerpinB2 promoter in vivo.
T213 137-271 Sentence denotes Transcription factor occupancy on the SerpinB2 proximal promoter in vivo was determined by chromatin immunoprecipitation (ChIP) assay.
T214 272-461 Sentence denotes RAW264.7 macrophages were treated in the presence or absence of LPS for the indicated times and chromatin immunoprecipitation performed using antibodies against C/EBP-β or p-C/EBP-β (T217).
T215 462-775 Sentence denotes Soluble chromatin (600–700 ng) was immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), RNA Polymerase II (RNAPII), or a rabbit IgG (rIgG) control. (A) Typical PCR pattern obtained in ChIP assays using murine SerpinB2 proximal promoter-specific primers, 338/−315 and −5/+19, as diagrammed in top.
T216 776-879 Sentence denotes Recruitment of RNAPII to the SerpinB2 promoter suggests active transcription following LPS stimulation.
T217 880-1116 Sentence denotes Minimal background was detected using the rabbit IgG control, indicative of the specificity of the ChIP reaction. (B) qPCR analysis of chromatin immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), and the rIgG control.
T218 1117-1190 Sentence denotes The data are represented relative to rIgG signal using the 2-ΔΔCt method.

simple1

Id Subject Object Predicate Lexical cue
T25394 1154-1158 Protein denotes rIgG
T25393 1077-1093 Protein denotes p-C/EBP-β (T217)
T25392 1068-1075 Protein denotes C/EBP-β
T25391 805-813 Protein denotes SerpinB2
T25390 688-696 Protein denotes SerpinB2
T25389 549-565 Protein denotes p-C/EBP-β (T217)
T25388 540-547 Protein denotes C/EBP-β
T25387 444-460 Protein denotes p-C/EBP-β (T217)
T25386 433-440 Protein denotes C/EBP-β
T25385 175-183 Protein denotes SerpinB2
T25384 110-118 Protein denotes SerpinB2
T25383 72-79 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T25604 776-787 Binding denotes Recruitment
T25603 158-167 Binding denotes occupancy
T25602 57-68 Binding denotes recruitment
T25601 1154-1158 Protein denotes rIgG
T25600 1077-1093 Protein denotes p-C/EBP-β (T217)
T25599 1068-1075 Protein denotes C/EBP-β
T25598 805-813 Protein denotes SerpinB2
T25597 688-696 Protein denotes SerpinB2
T25596 549-565 Protein denotes p-C/EBP-β (T217)
T25595 540-547 Protein denotes C/EBP-β
T25594 444-460 Protein denotes p-C/EBP-β (T217)
T25593 433-440 Protein denotes C/EBP-β
T25592 175-183 Protein denotes SerpinB2
T25591 110-118 Protein denotes SerpinB2
T25590 72-79 Protein denotes C/EBP-β
R18320 T25590 T25602 themeOf C/EBP-β,recruitment
R18321 T25591 T25602 themeOf SerpinB2,recruitment
R18322 T25592 T25603 themeOf SerpinB2,occupancy
R18323 T25598 T25604 themeOf SerpinB2,Recruitment

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T25659 776-787 Binding denotes Recruitment
T25658 158-167 Binding denotes occupancy
T25657 57-68 Binding denotes recruitment
T25656 1154-1158 Protein denotes rIgG
T25655 1077-1093 Protein denotes p-C/EBP-β (T217)
T25654 1068-1075 Protein denotes C/EBP-β
T25653 805-813 Protein denotes SerpinB2
T25652 688-696 Protein denotes SerpinB2
T25651 549-565 Protein denotes p-C/EBP-β (T217)
T25650 540-547 Protein denotes C/EBP-β
T25649 444-460 Protein denotes p-C/EBP-β (T217)
T25648 433-440 Protein denotes C/EBP-β
T25647 175-183 Protein denotes SerpinB2
T25646 110-118 Protein denotes SerpinB2
T25645 72-79 Protein denotes C/EBP-β
R18330 T25645 T25657 themeOf C/EBP-β,recruitment
R18331 T25646 T25657 themeOf SerpinB2,recruitment
R18332 T25647 T25658 themeOf SerpinB2,occupancy
R18333 T25653 T25659 themeOf SerpinB2,Recruitment

DLUT931

Id Subject Object Predicate Lexical cue
T25629 776-787 Binding denotes Recruitment
T25628 57-68 Binding denotes recruitment
T25627 1154-1158 Protein denotes rIgG
T25626 1077-1093 Protein denotes p-C/EBP-β (T217)
T25625 1068-1075 Protein denotes C/EBP-β
T25624 805-813 Protein denotes SerpinB2
T25623 688-696 Protein denotes SerpinB2
T25622 549-565 Protein denotes p-C/EBP-β (T217)
T25621 540-547 Protein denotes C/EBP-β
T25620 444-460 Protein denotes p-C/EBP-β (T217)
T25619 433-440 Protein denotes C/EBP-β
T25618 175-183 Protein denotes SerpinB2
T25617 110-118 Protein denotes SerpinB2
T25616 72-79 Protein denotes C/EBP-β
T25630 853-862 Positive_regulation denotes following
R18324 T25616 T25628 themeOf C/EBP-β,recruitment
R18325 T25617 T25628 themeOf SerpinB2,recruitment
R18326 T25624 T25629 themeOf SerpinB2,Recruitment
R18327 T25629 T25630 themeOf Recruitment,following

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25741 801-878 Transcription denotes the SerpinB2 promoter suggests active transcription following LPS stimulation
T25740 1099-1115 Regulation denotes the rIgG control
T25739 706-723 Entity denotes promoter-specific
T25738 368-377 Entity denotes chromatin
T25737 863-866 Entity denotes LPS
T25736 1012-1059 Entity denotes of chromatin immunoprecipitated with antibodies
T25735 414-424 Entity denotes antibodies
T25734 814-822 Entity denotes promoter
T25733 110-118 Protein denotes SerpinB2
T25732 607-609 Protein denotes Ig
T25731 1154-1158 Protein denotes rIgG
T25730 801-831 Protein denotes the SerpinB2 promoter suggests
T25729 540-584 Protein denotes C/EBP-β, p-C/EBP-β (T217), RNA Polymerase II
T25728 1103-1107 Protein denotes rIgG
T25727 1049-1059 Entity denotes antibodies
T25726 516-531 Entity denotes with antibodies
T25725 639-642 Protein denotes PCR
T25724 72-79 Protein denotes C/EBP-β
T25723 333-339 Entity denotes of LPS
T25722 999-1002 Protein denotes PCR
T25721 433-440 Protein denotes C/EBP-β
T25720 99-135 Entity denotes the murine SerpinB2 promoter in vivo
T25719 455-459 Entity denotes T217
T25718 540-566 Protein denotes C/EBP-β, p-C/EBP-β (T217),
T25717 228-237 Entity denotes chromatin
T25716 688-696 Protein denotes SerpinB2
T25715 1088-1092 Entity denotes T217
T25714 193-209 Entity denotes promoter in vivo
T25713 549-565 Protein denotes p-C/EBP-β (T217)
T25712 1068-1075 Protein denotes C/EBP-β
T25711 444-453 Protein denotes p-C/EBP-β
T25710 612-616 Protein denotes rIgG
T25709 171-192 Protein denotes the SerpinB2 proximal
T25708 663-674 Entity denotes ChIP assays
T25707 560-564 Entity denotes T217
T25706 1077-1093 Protein denotes p-C/EBP-β (T217)
T25705 272-292 Entity denotes RAW264.7 macrophages
T25704 462-479 Entity denotes Soluble chromatin
R18338 T25720 T25733 partOf the murine SerpinB2 promoter in vivo,SerpinB2
R18339 T25728 T25740 themeOf rIgG,the rIgG control
R18340 T25730 T25741 themeOf the SerpinB2 promoter suggests,the SerpinB2 promoter suggests active transcription following LPS stimulation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T25681 1154-1158 Protein denotes rIgG
T25680 1103-1115 Protein denotes rIgG control
T25679 1088-1092 Protein denotes T217
T25678 1068-1086 Protein denotes C/EBP-β, p-C/EBP-β
T25677 979-983 Protein denotes ChIP
T25676 929-932 Protein denotes IgG
T25675 776-787 Binding denotes Recruitment
T25674 805-822 Protein denotes SerpinB2 promoter
T25673 791-797 Protein denotes RNAPII
T25672 612-616 Protein denotes rIgG
T25671 600-610 Protein denotes rabbit IgG
T25670 586-592 Protein denotes RNAPII
T25669 567-584 Protein denotes RNA Polymerase II
T25668 560-564 Protein denotes T217
T25667 540-558 Protein denotes C/EBP-β, p-C/EBP-β
T25666 455-459 Protein denotes T217
T25665 444-453 Protein denotes p-C/EBP-β
T25664 433-440 Protein denotes C/EBP-β
T25663 175-201 Protein denotes SerpinB2 proximal promoter
T25662 103-127 Protein denotes murine SerpinB2 promoter
T25661 84-95 Protein denotes C/EBP-βT217
T25660 72-79 Protein denotes C/EBP-β
R18334 T25673 T25675 themeOf RNAPII,Recruitment
R18335 T25674 T25675 themeOf SerpinB2 promoter,Recruitment

testone

Id Subject Object Predicate Lexical cue
T25293 839-852 Transcription denotes transcription
T25292 814-822 Entity denotes promoter
T25291 776-787 Binding denotes Recruitment
T25290 193-201 Entity denotes promoter
T25289 119-127 Entity denotes promoter
T25288 57-68 Binding denotes recruitment
T25287 1154-1158 Protein denotes rIgG
T25286 1077-1093 Protein denotes p-C/EBP-β (T217)
T25285 1068-1075 Protein denotes C/EBP-β
T25284 805-813 Protein denotes SerpinB2
T25283 688-696 Protein denotes SerpinB2
T25282 549-565 Protein denotes p-C/EBP-β (T217)
T25281 540-547 Protein denotes C/EBP-β
T25280 444-460 Protein denotes p-C/EBP-β (T217)
T25279 433-440 Protein denotes C/EBP-β
T25278 175-183 Protein denotes SerpinB2
T25277 110-118 Protein denotes SerpinB2
T25276 72-79 Protein denotes C/EBP-β
R18118 T25276 T25288 themeOf C/EBP-β,recruitment
R18119 T25284 T25293 themeOf SerpinB2,transcription
R18120 T25289 T25288 themeOf promoter,recruitment
R18121 T25289 T25277 partOf promoter,SerpinB2
R18122 T25290 T25278 partOf promoter,SerpinB2
R18123 T25292 T25291 themeOf promoter,Recruitment
R18124 T25292 T25284 partOf promoter,SerpinB2

test3

Id Subject Object Predicate Lexical cue
T25321 1154-1158 Protein denotes rIgG
T25320 1077-1094 Protein denotes p-C/EBP-β (T217),
T25319 1068-1075 Protein denotes C/EBP-β
T25318 839-852 Transcription denotes transcription
T25317 814-822 Entity denotes promoter
T25316 805-813 Protein denotes SerpinB2
T25315 776-787 Binding denotes Recruitment
T25314 688-696 Protein denotes SerpinB2
T25313 549-566 Protein denotes p-C/EBP-β (T217),
T25312 540-547 Protein denotes C/EBP-β
T25311 433-440 Protein denotes C/EBP-β
T25310 175-183 Protein denotes SerpinB2
T25309 158-167 Binding denotes occupancy
T25308 110-118 Protein denotes SerpinB2
T25307 72-79 Protein denotes C/EBP-β
T25306 57-68 Binding denotes recruitment
T25305 1154-1158 Protein denotes rIgG
T25304 1077-1093 Protein denotes p-C/EBP-β (T217)
T25303 1068-1075 Protein denotes C/EBP-β
T25302 805-813 Protein denotes SerpinB2
T25301 688-696 Protein denotes SerpinB2
T25300 549-565 Protein denotes p-C/EBP-β (T217)
T25299 540-547 Protein denotes C/EBP-β
T25298 444-460 Protein denotes p-C/EBP-β (T217)
T25297 433-440 Protein denotes C/EBP-β
T25296 175-183 Protein denotes SerpinB2
T25295 110-118 Protein denotes SerpinB2
T25294 72-79 Protein denotes C/EBP-β
R18125 T25307 T25306 themeOf C/EBP-β,recruitment
R18126 T25317 T25315 themeOf promoter,Recruitment
R18127 T25317 T25316 partOf promoter,SerpinB2