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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25957 2843-2844 . denotes .
T25956 2837-2843 NN denotes method
T25955 2830-2836 JJ denotes 2-ΔΔCt
T25954 2826-2829 DT denotes the
T25953 2820-2825 VBG denotes using
T25952 2813-2819 NN denotes signal
T25951 2808-2812 NNP denotes rIgG
T25950 2805-2807 TO denotes to
T25949 2796-2804 JJ denotes relative
T25948 2784-2795 VBN denotes represented
T25947 2780-2783 VBP denotes are
T25946 2775-2779 NNS denotes data
T25945 2771-2774 DT denotes The
T25944 2769-2770 . denotes .
T25943 2762-2769 NN denotes control
T25942 2757-2761 NNP denotes rIgG
T25941 2753-2756 DT denotes the
T25940 2749-2752 CC denotes and
T25939 2747-2748 , denotes ,
T25938 2746-2747 -RRB- denotes )
T25937 2742-2746 CD denotes T217
T25936 2741-2742 -LRB- denotes (
T25935 2739-2740 NN denotes β
T25934 2738-2739 : denotes -
T25933 2731-2738 NNP denotes p-C/EBP
T25932 2729-2730 , denotes ,
T25931 2728-2729 NN denotes β
T25915 2633-2637 NNP denotes ChIP
T25914 2629-2632 DT denotes the
T25913 2626-2628 IN denotes of
T25912 2614-2625 NN denotes specificity
T25911 2610-2613 DT denotes the
T25910 2607-2609 IN denotes of
T25909 2596-2606 JJ denotes indicative
T25908 2594-2595 , denotes ,
T25907 2587-2594 NN denotes control
T25906 2583-2586 NNP denotes IgG
T25905 2576-2582 NN denotes rabbit
T25904 2572-2575 DT denotes the
T25903 2566-2571 VBG denotes using
T25902 2557-2565 VBN denotes detected
T25901 2553-2556 VBD denotes was
T25900 2542-2552 NN denotes background
T25899 2534-2541 JJ denotes Minimal
T25898 2532-2533 . denotes .
T25897 2521-2532 NN denotes stimulation
T25896 2517-2520 NNP denotes LPS
T25895 2507-2516 VBG denotes following
T25894 2493-2506 NN denotes transcription
T25893 2486-2492 JJ denotes active
T25892 2477-2485 VBZ denotes suggests
T25891 2468-2476 NN denotes promoter
T25890 2459-2467 NNP denotes SerpinB2
T25889 2455-2458 DT denotes the
T25888 2452-2454 TO denotes to
T25887 2445-2451 NNP denotes RNAPII
T25886 2442-2444 IN denotes of
T25885 2430-2441 NN denotes Recruitment
T25884 2428-2429 . denotes .
T25883 2425-2428 NN denotes top
T25882 2422-2424 IN denotes in
T25881 2411-2421 VBN denotes diagrammed
T25880 2408-2410 IN denotes as
T25879 2406-2407 , denotes ,
T25878 2403-2406 CD denotes +19
T25877 2402-2403 NN denotes /
T25876 2401-2402 CD denotes 5
T25875 2400-2401 CD denotes
T25874 2396-2399 CC denotes and
T25873 2392-2395 CD denotes 315
T25872 2391-2392 NN denotes
T25871 2390-2391 CD denotes /
T25870 2387-2390 CD denotes 338
T25869 2385-2386 , denotes ,
T25868 2378-2385 NNS denotes primers
T25867 2360-2377 JJ denotes promoter-specific
T25866 2351-2359 JJ denotes proximal
T25865 2342-2350 JJ denotes SerpinB2
T25864 2335-2341 JJ denotes murine
T25863 2329-2334 VBG denotes using
T25862 2322-2328 NNS denotes assays
T25861 2317-2321 NNP denotes ChIP
T25860 2314-2316 IN denotes in
T25859 2305-2313 VBN denotes obtained
T25858 2297-2304 NN denotes pattern
T25857 2293-2296 NNP denotes PCR
T25856 2285-2292 JJ denotes Typical
T25855 2283-2284 -RRB- denotes )
T25854 2282-2283 NNP denotes A
T25853 2281-2282 -LRB- denotes (
T25852 2279-2280 . denotes .
T25851 2272-2279 NN denotes control
T25850 2270-2271 -RRB- denotes )
T25849 2266-2270 NNP denotes rIgG
T25778 1919-1924 NN denotes assay
T25848 2265-2266 -LRB- denotes (
T25847 2261-2264 NNP denotes IgG
T25846 2254-2260 NN denotes rabbit
T25845 2252-2253 DT denotes a
T25844 2249-2251 CC denotes or
T25843 2247-2248 , denotes ,
T25842 2246-2247 -RRB- denotes )
T25841 2240-2246 NNP denotes RNAPII
T25840 2239-2240 -LRB- denotes (
T25839 2236-2238 NNP denotes II
T25838 2225-2235 NNP denotes Polymerase
T25837 2221-2224 NNP denotes RNA
T25836 2219-2220 , denotes ,
T25835 2218-2219 -RRB- denotes )
T25834 2214-2218 CD denotes T217
T25833 2213-2214 -LRB- denotes (
T25832 2211-2212 NN denotes β
T25831 2210-2211 : denotes -
T25830 2203-2210 NNP denotes p-C/EBP
T25829 2201-2202 , denotes ,
T25828 2200-2201 NN denotes β
T25827 2199-2200 : denotes -
T25826 2194-2199 NNP denotes C/EBP
T25825 2186-2193 IN denotes against
T25824 2175-2185 NNS denotes antibodies
T25823 2170-2174 IN denotes with
T25822 2151-2169 VBN denotes immunoprecipitated
T25821 2147-2150 VBD denotes was
T25820 2145-2146 -RRB- denotes )
T25819 2143-2145 NN denotes ng
T25818 2139-2142 CD denotes 700
T25817 2135-2138 CD denotes 600
T25816 2134-2135 -LRB- denotes (
T25815 2124-2133 NN denotes chromatin
T25814 2116-2123 JJ denotes Soluble
T25813 2114-2115 . denotes .
T25812 2113-2114 -RRB- denotes )
T25811 2109-2113 CD denotes T217
T25810 2108-2109 -LRB- denotes (
T25809 2106-2107 NN denotes β
T25808 2105-2106 : denotes -
T25807 2098-2105 NN denotes p-C/EBP
T25806 2095-2097 CC denotes or
T25805 2093-2094 NN denotes β
T25804 2092-2093 : denotes -
T25803 2087-2092 NNP denotes C/EBP
T25802 2079-2086 IN denotes against
T25801 2068-2078 NNS denotes antibodies
T25800 2062-2067 VBG denotes using
T25799 2052-2061 VBN denotes performed
T25798 2032-2051 NN denotes immunoprecipitation
T25797 2022-2031 NN denotes chromatin
T25796 2018-2021 CC denotes and
T25795 2012-2017 NNS denotes times
T25794 2002-2011 JJ denotes indicated
T25793 1998-2001 DT denotes the
T25792 1994-1997 IN denotes for
T25791 1990-1993 NNP denotes LPS
T25790 1987-1989 IN denotes of
T25789 1979-1986 NN denotes absence
T25788 1976-1978 CC denotes or
T25787 1967-1975 NN denotes presence
T25786 1963-1966 DT denotes the
T25785 1960-1962 IN denotes in
T25784 1952-1959 VBN denotes treated
T25783 1947-1951 VBD denotes were
T25782 1935-1946 NNS denotes macrophages
T25780 1926-1932 CD denotes RAW264
T25779 1924-1925 . denotes .
T25777 1917-1918 -RRB- denotes )
T25776 1913-1917 NNP denotes ChIP
T25775 1912-1913 -LRB- denotes (
T25774 1892-1911 NN denotes immunoprecipitation
T25773 1882-1891 NN denotes chromatin
T25772 1879-1881 IN denotes by
T25771 1868-1878 VBN denotes determined
T25770 1864-1867 VBD denotes was
T25769 1859-1863 NN denotes vivo
T25768 1856-1858 IN denotes in
T25767 1847-1855 NN denotes promoter
T25766 1838-1846 JJ denotes proximal
T25765 1829-1837 NNP denotes SerpinB2
T25764 1825-1828 DT denotes the
T25763 1822-1824 IN denotes on
T25762 1812-1821 NN denotes occupancy
T25761 1805-1811 NN denotes factor
T25760 1791-1804 NNP denotes Transcription
T25759 1789-1790 . denotes .
T25758 1785-1789 NN denotes vivo
T25757 1782-1784 IN denotes in
T25756 1773-1781 NN denotes promoter
T25755 1764-1772 NNP denotes SerpinB2
T25754 1757-1763 NN denotes murine
T25753 1753-1756 DT denotes the
T25752 1750-1752 TO denotes to
T25751 1744-1749 NNP denotes βT217
T25750 1743-1744 : denotes -
T25749 1738-1743 NNP denotes C/EBP
T25748 1734-1737 CC denotes and
T25747 1732-1733 NN denotes β
T25746 1731-1732 : denotes -
T25745 1726-1731 NNP denotes C/EBP
T25744 1723-1725 IN denotes of
T25743 1711-1722 NN denotes recruitment
T25742 1698-1710 NNP denotes Differential
T25930 2727-2728 : denotes -
T25929 2722-2727 NNP denotes C/EBP
T25928 2714-2721 IN denotes against
T25927 2703-2713 NNS denotes antibodies
T25926 2698-2702 IN denotes with
T25925 2679-2697 VBN denotes immunoprecipitated
T25924 2669-2678 NN denotes chromatin
T25923 2666-2668 IN denotes of
T25922 2657-2665 NN denotes analysis
T25921 2652-2656 NNP denotes qPCR
T25920 2650-2651 -RRB- denotes )
T25919 2649-2650 NNP denotes B
T25918 2648-2649 -LRB- denotes (
T25917 2646-2647 . denotes .
T25916 2638-2646 NN denotes reaction
T15631 1652-1653 . denotes .
T15630 1649-1652 NNP denotes LPS
T15629 1646-1648 TO denotes to
T15628 1637-1645 NN denotes response
T15627 1634-1636 IN denotes in
T15626 1625-1633 NN denotes promoter
T15625 1616-1624 NNP denotes SerpinB2
T15624 1612-1615 DT denotes the
T15623 1607-1611 IN denotes from
T15622 1593-1606 NN denotes transcription
T15621 1583-1592 VBN denotes increased
T15620 1579-1582 IN denotes for
T15619 1567-1578 JJ denotes responsible
T15618 1564-1566 VB denotes be
T15617 1560-1563 RB denotes not
T15616 1556-1559 MD denotes may
T15615 1554-1555 NN denotes β
T15614 1553-1554 : denotes -
T15613 1548-1553 NNP denotes C/EBP
T15612 1528-1547 JJ denotes T217-phosphorylated
T15611 1523-1527 IN denotes that
T15610 1514-1522 VBP denotes indicate
T15609 1510-1513 CC denotes and
T15608 1508-1509 , denotes ,
T15607 1497-1508 NN denotes recruitment
T15606 1491-1496 NNP denotes βT217
T15605 1490-1491 : denotes -
T15604 1483-1490 NN denotes p-C/EBP
T15603 1479-1482 CC denotes and
T15602 1477-1478 NN denotes β
T15601 1476-1477 : denotes -
T15600 1471-1476 NNP denotes C/EBP
T15599 1463-1470 IN denotes between
T15598 1450-1462 NN denotes relationship
T15597 1442-1449 JJ denotes inverse
T15596 1439-1441 DT denotes an
T15595 1434-1438 VBP denotes show
T15594 1429-1433 NNS denotes data
T15593 1423-1428 DT denotes These
T15592 1421-1422 . denotes .
T15591 1420-1421 -RRB- denotes )
T15590 1419-1420 CD denotes 7
T15589 1414-1418 NN denotes Fig.
T15588 1413-1414 -LRB- denotes (
T15587 1412-1413 -RRB- denotes )
T15586 1409-1412 NNS denotes hrs
T15585 1407-1408 CD denotes 8
T15584 1403-1406 CC denotes and
T15583 1401-1402 CD denotes 4
T15582 1400-1401 -LRB- denotes (
T15581 1389-1399 NNS denotes timepoints
T15580 1383-1388 JJ denotes later
T15579 1380-1382 IN denotes at
T15578 1368-1379 NN denotes stimulation
T15577 1364-1367 NNP denotes LPS
T15576 1359-1363 IN denotes with
T15575 1348-1358 VBN denotes diminished
T15574 1339-1347 NN denotes promoter
T15573 1330-1338 JJ denotes proximal
T15572 1321-1329 NNP denotes SerpinB2
T15571 1317-1320 DT denotes the
T15570 1313-1316 IN denotes for
T15569 1307-1312 NNP denotes βT217
T15568 1306-1307 : denotes -
T15567 1299-1306 NNP denotes p-C/EBP
T15566 1296-1298 IN denotes of
T15565 1287-1295 NN denotes affinity
T15564 1279-1286 JJ denotes binding
T15563 1275-1278 DT denotes the
T15562 1273-1274 , denotes ,
T15561 1272-1273 NN denotes β
T15560 1271-1272 : denotes -
T15559 1266-1271 NNP denotes C/EBP
T15558 1260-1265 JJ denotes total
T15557 1257-1259 TO denotes to
T15556 1248-1256 NN denotes contrast
T15555 1245-1247 IN denotes In
T15554 1243-1244 . denotes .
T15553 1242-1243 -RRB- denotes )
T15552 1241-1242 CD denotes 7
T15551 1236-1240 NN denotes Fig.
T15550 1235-1236 -LRB- denotes (
T15549 1223-1234 NN denotes stimulation
T15548 1219-1222 NNP denotes LPS
T15547 1216-1218 IN denotes of
T15546 1213-1215 NN denotes hr
T15545 1211-1212 CD denotes 1
T15544 1205-1210 IN denotes after
T15543 1197-1204 JJ denotes present
T15542 1192-1196 RB denotes also
T15541 1188-1191 CC denotes and
T15540 1179-1187 NN denotes promoter
T15539 1170-1178 JJ denotes proximal
T15538 1161-1169 NNP denotes SerpinB2
T15537 1157-1160 DT denotes the
T15536 1154-1156 TO denotes to
T15535 1148-1153 VBN denotes bound
T15534 1133-1147 RB denotes constitutively
T15533 1129-1132 VBD denotes was
T15532 1123-1128 NNP denotes βT217
T15531 1122-1123 : denotes -
T15530 1115-1122 SYM denotes p-C/EBP
T15529 1113-1114 . denotes .
T15528 1112-1113 NNP denotes ]
T15527 1110-1112 CD denotes 65
T15526 1109-1110 NNP denotes [
T15525 1100-1108 NN denotes survival
T15524 1095-1099 NN denotes cell
T15523 1090-1094 IN denotes with
T15522 1079-1089 VBN denotes associated
T15521 1074-1078 VBN denotes been
T15520 1070-1073 VBZ denotes has
T15519 1064-1069 WDT denotes which
T15518 1062-1063 , denotes ,
T15517 1061-1062 -RRB- denotes )
T15516 1056-1061 NNP denotes βT217
T15515 1055-1056 : denotes -
T15514 1048-1055 SYM denotes p-C/EBP
T15513 1047-1048 -LRB- denotes (
T15512 1039-1046 NN denotes isoform
T15511 1037-1038 NN denotes β
T15510 1036-1037 : denotes -
T15509 1031-1036 NNP denotes C/EBP
T15508 1016-1030 VBD denotes phosphorylated
T15507 1011-1015 NNP denotes T217
T15506 1007-1010 DT denotes the
T15505 1004-1006 IN denotes of
T15504 995-1003 NN denotes promoter
T15503 986-994 JJ denotes proximal
T15502 977-985 NNP denotes SerpinB2
T15501 973-976 DT denotes the
T15500 970-972 TO denotes to
T15499 958-969 NN denotes recruitment
T15498 945-957 VBD denotes investigated
T15497 942-944 PRP denotes we
T15496 940-941 , denotes ,
T15495 939-940 NNP denotes ]
T15494 937-939 CD denotes 64
T15493 936-937 NNP denotes [
T15492 934-935 : denotes ;
T15491 933-934 NNP denotes ]
T15490 931-933 CD denotes 63
T15489 930-931 NNP denotes [
T15488 928-929 : denotes ;
T15487 927-928 NNP denotes ]
T15486 925-927 CD denotes 38
T15485 924-925 NNP denotes [
T15484 918-923 NNS denotes genes
T15483 911-917 NN denotes target
T15482 897-910 VB denotes transactivate
T15481 894-896 TO denotes to
T15480 886-893 NN denotes ability
T15479 882-883 NN denotes β
T15478 881-882 : denotes -
T15398 401-409 JJ denotes enriched
T15397 397-400 DT denotes the
T15396 393-396 CC denotes and
T15395 391-392 , denotes ,
T15394 383-391 NNS denotes proteins
T15393 375-382 JJ denotes binding
T15392 371-374 NNP denotes DNA
T15391 363-370 IN denotes against
T15390 352-362 NNS denotes antibodies
T15389 347-351 IN denotes with
T15388 328-346 VBN denotes immunoprecipitated
T15387 324-327 VBD denotes was
T15386 314-323 NN denotes chromatin
T15385 306-313 JJ denotes soluble
T15384 304-305 , denotes ,
T15383 301-304 NNS denotes hrs
T15382 299-300 CD denotes 8
T15381 296-298 TO denotes to
T15380 293-295 RB denotes up
T15379 289-292 IN denotes for
T15378 285-288 NNP denotes LPS
T15377 280-284 IN denotes with
T15376 269-279 VBN denotes stimulated
T15375 264-268 VBD denotes were
T15374 258-263 NNS denotes cells
T15373 252-257 CD denotes 264.7
T15372 248-251 NNP denotes RAW
T15371 246-247 . denotes .
T15370 245-246 -RRB- denotes )
T15369 241-245 NNP denotes ChIP
T15368 240-241 -LRB- denotes (
T15367 220-239 NN denotes immunoprecipitation
T15366 210-219 NN denotes chromatin
T15365 207-209 IN denotes by
T15364 202-206 NN denotes vivo
T15363 199-201 IN denotes in
T15362 195-198 NNP denotes LPS
T15361 192-194 TO denotes to
T15360 183-191 NN denotes response
T15359 180-182 IN denotes in
T15358 171-179 NN denotes promoter
T15357 162-170 NNP denotes SerpinB2
T15356 155-161 NN denotes murine
T15355 151-154 DT denotes the
T15354 148-150 TO denotes to
T15353 136-147 NN denotes recruitment
T15352 134-135 NN denotes β
T15351 133-134 : denotes -
T15350 128-133 NNP denotes C/EBP
T15349 125-127 IN denotes of
T15348 116-124 NNS denotes dynamics
T15347 107-115 JJ denotes temporal
T15346 103-106 DT denotes the
T15345 90-102 VBD denotes investigated
T15344 87-89 PRP denotes We
T15343 80-86 NNP denotes Manner
T15342 66-79 JJ denotes LPS-inducible
T15341 63-65 DT denotes an
T15340 60-62 IN denotes in
T15339 55-59 NN denotes vivo
T15338 52-54 IN denotes in
T15337 43-51 NNP denotes Promoter
T15336 34-42 NNP denotes Proximal
T15335 25-33 NNP denotes SerpinB2
T15334 18-24 NNP denotes Murine
T15333 14-17 DT denotes the
T15332 8-13 VBZ denotes Binds
T15331 6-7 NN denotes β
T15330 5-6 : denotes -
T15329 0-5 SYM denotes C/EBP
T15477 876-881 NNP denotes C/EBP
T15476 869-875 VB denotes affect
T15475 865-868 MD denotes can
T15474 858-864 NNS denotes states
T15473 842-857 NN denotes phosphorylation
T15472 840-841 NN denotes β
T15471 839-840 : denotes -
T15470 834-839 NNP denotes C/EBP
T15469 831-833 IN denotes in
T15468 823-830 NNS denotes changes
T15467 817-822 IN denotes Since
T15466 815-816 . denotes .
T15465 814-815 -RRB- denotes )
T15464 813-814 CD denotes 7
T15463 808-812 NN denotes Fig.
T15462 807-808 -LRB- denotes (
T15461 803-806 NNS denotes hrs
T15460 801-802 CD denotes 8
T15459 795-800 IN denotes after
T15458 789-794 NNS denotes cells
T15457 776-788 JJ denotes unstimulated
T15456 771-775 IN denotes over
T15455 763-770 JJ denotes 10-fold
T15454 760-762 IN denotes as
T15453 755-759 RB denotes much
T15452 752-754 RB denotes as
T15451 743-751 VBG denotes reaching
T15450 739-742 NNP denotes LPS
T15449 736-738 TO denotes to
T15448 727-735 NN denotes response
T15447 724-726 IN denotes in
T15446 713-723 RB denotes temporally
T15445 703-712 VBD denotes increased
T15444 699-702 CC denotes and
T15443 687-698 NNS denotes macrophages
T15442 674-686 JJ denotes unstimulated
T15441 671-673 IN denotes in
T15440 662-670 NN denotes promoter
T15439 658-661 DT denotes the
T15438 653-657 IN denotes with
T15437 641-652 NN denotes association
T15436 637-640 PRP$ denotes its
T15435 634-636 IN denotes by
T15434 621-633 VBN denotes demonstrated
T15433 618-620 IN denotes as
T15432 609-617 NN denotes promoter
T15431 600-608 NNP denotes SerpinB2
T15430 596-599 DT denotes the
T15429 593-595 IN denotes at
T15428 585-592 JJ denotes present
T15427 570-584 RB denotes constitutively
T15426 567-569 VBZ denotes is
T15425 565-566 NN denotes β
T15424 564-565 : denotes -
T15423 559-564 NNP denotes C/EBP
T15422 554-558 IN denotes that
T15421 547-553 VBD denotes showed
T15420 539-546 NNS denotes results
T15419 535-538 DT denotes The
T15418 533-534 . denotes .
T15417 532-533 -RRB- denotes )
T15416 530-532 NN denotes 4A
T15415 525-529 JJ denotes fig.
T15414 522-524 IN denotes in
T15413 510-521 VBN denotes illustrated
T15412 509-510 -LRB- denotes (
T15411 501-508 NNS denotes primers
T15410 492-500 JJ denotes specific
T15409 483-491 NN denotes promoter
T15408 474-482 JJ denotes proximal
T15407 465-473 CD denotes SerpinB2
T15406 459-464 VBG denotes using
T15405 454-458 JJ denotes qPCR
T15404 450-453 CC denotes and
T15403 432-449 JJ denotes semi-quantitative
T15402 427-431 DT denotes both
T15401 424-426 IN denotes by
T15400 414-423 VBN denotes amplified
T15399 410-413 NN denotes DNA
T25781 1932-1934 CD denotes .7
R11277 T15329 T15332 punct C/EBP,Binds
R11278 T15330 T15331 punct -,β
R11279 T15331 T15332 nsubj β,Binds
R11280 T15332 T15332 ROOT Binds,Binds
R11281 T15333 T15336 det the,Proximal
R11282 T15334 T15336 compound Murine,Proximal
R11283 T15335 T15336 compound SerpinB2,Proximal
R11284 T15336 T15337 compound Proximal,Promoter
R11285 T15337 T15332 dobj Promoter,Binds
R11286 T15338 T15337 prep in,Promoter
R11287 T15339 T15338 pobj vivo,in
R11288 T15340 T15337 prep in,Promoter
R11289 T15341 T15343 det an,Manner
R11290 T15342 T15343 compound LPS-inducible,Manner
R11291 T15343 T15340 pobj Manner,in
R11292 T15344 T15345 nsubj We,investigated
R11293 T15345 T15337 relcl investigated,Promoter
R11294 T15346 T15348 det the,dynamics
R11295 T15347 T15348 amod temporal,dynamics
R11296 T15348 T15345 dobj dynamics,investigated
R11297 T15349 T15348 prep of,dynamics
R11298 T15350 T15353 compound C/EBP,recruitment
R11299 T15351 T15352 punct -,β
R11300 T15352 T15353 compound β,recruitment
R11301 T15353 T15349 pobj recruitment,of
R11302 T15354 T15345 prep to,investigated
R11303 T15355 T15358 det the,promoter
R11304 T15356 T15358 compound murine,promoter
R11305 T15357 T15358 compound SerpinB2,promoter
R11306 T15358 T15354 pobj promoter,to
R11307 T15359 T15345 prep in,investigated
R11308 T15360 T15359 pobj response,in
R11309 T15361 T15360 prep to,response
R11310 T15362 T15361 pobj LPS,to
R11311 T15363 T15362 prep in,LPS
R11312 T15364 T15363 pobj vivo,in
R11313 T15365 T15345 prep by,investigated
R11314 T15366 T15367 compound chromatin,immunoprecipitation
R11315 T15367 T15365 pobj immunoprecipitation,by
R11316 T15368 T15369 punct (,ChIP
R11317 T15369 T15367 appos ChIP,immunoprecipitation
R11318 T15370 T15369 punct ),ChIP
R11319 T15371 T15332 punct .,Binds
R11320 T15372 T15376 nsubjpass RAW,stimulated
R11321 T15373 T15374 nummod 264.7,cells
R11322 T15374 T15376 nsubjpass cells,stimulated
R11323 T15375 T15376 auxpass were,stimulated
R11324 T15376 T15376 ROOT stimulated,stimulated
R11325 T15377 T15376 prep with,stimulated
R11326 T15378 T15377 pobj LPS,with
R11327 T15379 T15376 prep for,stimulated
R11328 T15380 T15382 quantmod up,8
R11329 T15381 T15382 quantmod to,8
R11330 T15382 T15383 nummod 8,hrs
R11331 T15383 T15379 pobj hrs,for
R11332 T15384 T15387 punct ",",was
R11333 T15385 T15386 amod soluble,chromatin
R11334 T15386 T15387 nsubj chromatin,was
R11335 T15387 T15388 auxpass was,immunoprecipitated
R11336 T15388 T15376 conj immunoprecipitated,stimulated
R11337 T15389 T15388 prep with,immunoprecipitated
R11338 T15390 T15389 pobj antibodies,with
R11339 T15391 T15390 prep against,antibodies
R11340 T15392 T15394 amod DNA,proteins
R11341 T15393 T15394 amod binding,proteins
R11342 T15394 T15391 pobj proteins,against
R11343 T15395 T15388 punct ",",immunoprecipitated
R11344 T15396 T15388 cc and,immunoprecipitated
R11345 T15397 T15399 det the,DNA
R11346 T15398 T15399 amod enriched,DNA
R11347 T15399 T15406 nsubj DNA,using
R11348 T15400 T15399 acl amplified,DNA
R11349 T15401 T15400 agent by,amplified
R11350 T15402 T15403 preconj both,semi-quantitative
R11351 T15403 T15406 amod semi-quantitative,using
R11352 T15404 T15403 cc and,semi-quantitative
R11353 T15405 T15403 conj qPCR,semi-quantitative
R11354 T15406 T15388 conj using,immunoprecipitated
R11355 T15407 T15411 nummod SerpinB2,primers
R11356 T15408 T15409 amod proximal,promoter
R11357 T15409 T15411 nmod promoter,primers
R11358 T15410 T15411 amod specific,primers
R11359 T15411 T15406 dobj primers,using
R11360 T15412 T15411 punct (,primers
R11361 T15413 T15411 acl illustrated,primers
R11362 T15414 T15413 prep in,illustrated
R11363 T15415 T15416 amod fig.,4A
R11364 T15416 T15414 pobj 4A,in
R11365 T15417 T15411 punct ),primers
R11366 T15418 T15376 punct .,stimulated
R11367 T15419 T15420 det The,results
R11368 T15420 T15421 nsubj results,showed
R11369 T15421 T15421 ROOT showed,showed
R11370 T15422 T15426 mark that,is
R11371 T15423 T15425 compound C/EBP,β
R11372 T15424 T15425 punct -,β
R11373 T15425 T15426 nsubj β,is
R11374 T15426 T15421 ccomp is,showed
R11375 T15427 T15428 advmod constitutively,present
R11376 T15428 T15426 acomp present,is
R11377 T15429 T15428 prep at,present
R11378 T15430 T15432 det the,promoter
R11379 T15431 T15432 compound SerpinB2,promoter
R11380 T15432 T15429 pobj promoter,at
R11381 T15433 T15434 mark as,demonstrated
R11382 T15434 T15426 advcl demonstrated,is
R11383 T15435 T15434 agent by,demonstrated
R11384 T15436 T15437 poss its,association
R11385 T15437 T15435 pobj association,by
R11386 T15438 T15437 prep with,association
R11387 T15439 T15440 det the,promoter
R11388 T15440 T15438 pobj promoter,with
R11389 T15441 T15440 prep in,promoter
R11390 T15442 T15443 amod unstimulated,macrophages
R11391 T15443 T15441 pobj macrophages,in
R11392 T15444 T15434 cc and,demonstrated
R11393 T15445 T15434 conj increased,demonstrated
R11394 T15446 T15445 advmod temporally,increased
R11395 T15447 T15445 prep in,increased
R11396 T15448 T15447 pobj response,in
R11397 T15449 T15448 prep to,response
R11398 T15450 T15449 pobj LPS,to
R11399 T15451 T15445 advcl reaching,increased
R11400 T15452 T15451 prep as,reaching
R11401 T15453 T15455 amod much,10-fold
R11402 T15454 T15455 quantmod as,10-fold
R11403 T15455 T15452 pobj 10-fold,as
R11404 T15456 T15455 prep over,10-fold
R11405 T15457 T15458 amod unstimulated,cells
R11406 T15458 T15456 pobj cells,over
R11407 T15459 T15455 prep after,10-fold
R11408 T15460 T15461 nummod 8,hrs
R11409 T15461 T15459 pobj hrs,after
R11410 T15462 T15461 punct (,hrs
R11411 T15463 T15461 appos Fig.,hrs
R11412 T15464 T15463 nummod 7,Fig.
R11413 T15465 T15461 punct ),hrs
R11414 T15466 T15421 punct .,showed
R11415 T15467 T15476 mark Since,affect
R11416 T15468 T15476 nsubj changes,affect
R11417 T15469 T15468 prep in,changes
R11418 T15470 T15474 nmod C/EBP,states
R11419 T15471 T15472 punct -,β
R11420 T15472 T15474 nmod β,states
R11421 T15473 T15474 compound phosphorylation,states
R11422 T15474 T15469 pobj states,in
R11423 T15475 T15476 aux can,affect
R11424 T15476 T15498 advcl affect,investigated
R11425 T15477 T15479 compound C/EBP,β
R11426 T15478 T15479 punct -,β
R11427 T15479 T15480 poss β,ability
R11428 T15480 T15476 dobj ability,affect
R11429 T15481 T15482 aux to,transactivate
R11430 T15482 T15480 acl transactivate,ability
R11431 T15483 T15484 compound target,genes
R11432 T15484 T15482 dobj genes,transactivate
R11433 T15485 T15487 nmod [,]
R11434 T15486 T15487 nummod 38,]
R11435 T15487 T15482 dep ],transactivate
R11436 T15488 T15498 punct ;,investigated
R11437 T15489 T15498 advcl [,investigated
R11438 T15490 T15491 nummod 63,]
R11439 T15491 T15489 dobj ],[
R11440 T15492 T15491 punct ;,]
R11441 T15493 T15491 conj [,]
R11442 T15494 T15495 nummod 64,]
R11443 T15495 T15491 npadvmod ],]
R11444 T15496 T15498 punct ",",investigated
R11445 T15497 T15498 nsubj we,investigated
R11446 T15498 T15498 ROOT investigated,investigated
R11447 T15499 T15498 dobj recruitment,investigated
R11448 T15500 T15498 prep to,investigated
R11449 T15501 T15504 det the,promoter
R11450 T15502 T15504 nmod SerpinB2,promoter
R11451 T15503 T15504 amod proximal,promoter
R11452 T15504 T15500 pobj promoter,to
R11453 T15505 T15504 prep of,promoter
R11454 T15506 T15507 det the,T217
R11455 T15507 T15505 pobj T217,of
R11456 T15508 T15512 amod phosphorylated,isoform
R11457 T15509 T15512 compound C/EBP,isoform
R11458 T15510 T15511 punct -,β
R11459 T15511 T15512 compound β,isoform
R11460 T15512 T15498 dep isoform,investigated
R11461 T15513 T15516 punct (,βT217
R11462 T15514 T15516 punct p-C/EBP,βT217
R11463 T15515 T15516 punct -,βT217
R11464 T15516 T15512 appos βT217,isoform
R11465 T15517 T15516 punct ),βT217
R11466 T15518 T15512 punct ",",isoform
R11467 T15519 T15522 nsubjpass which,associated
R11468 T15520 T15522 aux has,associated
R11469 T15521 T15522 auxpass been,associated
R11470 T15522 T15512 relcl associated,isoform
R11471 T15523 T15522 prep with,associated
R11472 T15524 T15525 compound cell,survival
R11473 T15525 T15523 pobj survival,with
R11474 T15526 T15528 nmod [,]
R11475 T15527 T15528 nummod 65,]
R11476 T15528 T15525 appos ],survival
R11477 T15529 T15498 punct .,investigated
R11478 T15530 T15535 punct p-C/EBP,bound
R11479 T15531 T15532 punct -,βT217
R11480 T15532 T15535 nsubjpass βT217,bound
R11481 T15533 T15535 auxpass was,bound
R11482 T15534 T15535 advmod constitutively,bound
R11483 T15535 T15535 ROOT bound,bound
R11484 T15536 T15535 prep to,bound
R11485 T15537 T15540 det the,promoter
R11486 T15538 T15540 compound SerpinB2,promoter
R11487 T15539 T15540 compound proximal,promoter
R11488 T15540 T15536 pobj promoter,to
R11489 T15541 T15540 cc and,promoter
R11490 T15542 T15543 compound also,present
R11491 T15543 T15535 conj present,bound
R11492 T15544 T15543 prep after,present
R11493 T15545 T15546 nummod 1,hr
R11494 T15546 T15544 pobj hr,after
R11495 T15547 T15546 prep of,hr
R11496 T15548 T15549 compound LPS,stimulation
R11497 T15549 T15547 pobj stimulation,of
R11498 T15550 T15551 punct (,Fig.
R11499 T15551 T15546 appos Fig.,hr
R11500 T15552 T15551 nummod 7,Fig.
R11501 T15553 T15551 punct ),Fig.
R11502 T15554 T15498 punct .,investigated
R11503 T15555 T15555 ROOT In,In
R11504 T15556 T15555 pobj contrast,In
R11505 T15557 T15556 prep to,contrast
R11506 T15558 T15561 amod total,β
R11507 T15559 T15561 compound C/EBP,β
R11508 T15560 T15561 punct -,β
R11509 T15561 T15557 pobj β,to
R11510 T15562 T15561 punct ",",β
R11511 T15563 T15565 det the,affinity
R11512 T15564 T15565 amod binding,affinity
R11513 T15565 T15561 appos affinity,β
R11514 T15566 T15565 prep of,affinity
R11515 T15567 T15569 compound p-C/EBP,βT217
R11516 T15568 T15569 punct -,βT217
R11517 T15569 T15566 pobj βT217,of
R11518 T15570 T15565 prep for,affinity
R11519 T15571 T15574 det the,promoter
R11520 T15572 T15574 nmod SerpinB2,promoter
R11521 T15573 T15574 amod proximal,promoter
R11522 T15574 T15570 pobj promoter,for
R11523 T15575 T15574 acl diminished,promoter
R11524 T15576 T15575 prep with,diminished
R11525 T15577 T15578 compound LPS,stimulation
R11526 T15578 T15576 pobj stimulation,with
R11527 T15579 T15575 prep at,diminished
R11528 T15580 T15581 amod later,timepoints
R11529 T15581 T15579 pobj timepoints,at
R11530 T15582 T15581 punct (,timepoints
R11531 T15583 T15586 nummod 4,hrs
R11532 T15584 T15583 cc and,4
R11533 T15585 T15583 conj 8,4
R11534 T15586 T15581 appos hrs,timepoints
R11535 T15587 T15581 punct ),timepoints
R11536 T15588 T15589 punct (,Fig.
R11537 T15589 T15581 appos Fig.,timepoints
R11538 T15590 T15589 nummod 7,Fig.
R11539 T15591 T15589 punct ),Fig.
R11540 T15592 T15555 punct .,In
R11541 T15593 T15594 det These,data
R11542 T15594 T15595 nsubj data,show
R11543 T15595 T15595 ROOT show,show
R11544 T15596 T15598 det an,relationship
R11545 T15597 T15598 compound inverse,relationship
R11546 T15598 T15595 dobj relationship,show
R11547 T15599 T15598 prep between,relationship
R11548 T15600 T15599 pobj C/EBP,between
R11549 T15601 T15602 punct -,β
R11550 T15602 T15598 appos β,relationship
R11551 T15603 T15602 cc and,β
R11552 T15604 T15602 conj p-C/EBP,β
R11553 T15605 T15607 punct -,recruitment
R11554 T15606 T15607 compound βT217,recruitment
R11555 T15607 T15598 conj recruitment,relationship
R11556 T15608 T15607 punct ",",recruitment
R11557 T15609 T15607 cc and,recruitment
R11558 T15610 T15595 advcl indicate,show
R11559 T15611 T15618 mark that,be
R11560 T15612 T15615 amod T217-phosphorylated,β
R11561 T15613 T15615 compound C/EBP,β
R11562 T15614 T15615 punct -,β
R11563 T15615 T15618 nsubj β,be
R11564 T15616 T15618 aux may,be
R11565 T15617 T15618 neg not,be
R11566 T15618 T15610 ccomp be,indicate
R11567 T15619 T15618 acomp responsible,be
R11568 T15620 T15619 prep for,responsible
R11569 T15621 T15622 amod increased,transcription
R11570 T15622 T15620 pobj transcription,for
R11571 T15623 T15622 prep from,transcription
R11572 T15624 T15626 det the,promoter
R11573 T15625 T15626 compound SerpinB2,promoter
R11574 T15626 T15623 pobj promoter,from
R11575 T15627 T15618 prep in,be
R11576 T15628 T15627 pobj response,in
R11577 T15629 T15628 prep to,response
R11578 T15630 T15629 pobj LPS,to
R11579 T15631 T15595 punct .,show
R18341 T25742 T25743 compound Differential,recruitment
R18342 T25743 T25743 ROOT recruitment,recruitment
R18343 T25744 T25743 prep of,recruitment
R18344 T25745 T25744 pobj C/EBP,of
R18345 T25746 T25743 punct -,recruitment
R18346 T25747 T25743 conj β,recruitment
R18347 T25748 T25747 cc and,β
R18348 T25749 T25751 compound C/EBP,βT217
R18349 T25750 T25751 punct -,βT217
R18350 T25751 T25751 ROOT βT217,βT217
R18351 T25752 T25751 prep to,βT217
R18352 T25753 T25756 det the,promoter
R18353 T25754 T25756 compound murine,promoter
R18354 T25755 T25756 compound SerpinB2,promoter
R18355 T25756 T25752 pobj promoter,to
R18356 T25757 T25756 prep in,promoter
R18357 T25758 T25757 pobj vivo,in
R18358 T25759 T25751 punct .,βT217
R18359 T25760 T25761 compound Transcription,factor
R18360 T25761 T25762 compound factor,occupancy
R18361 T25762 T25771 nsubjpass occupancy,determined
R18362 T25763 T25762 prep on,occupancy
R18363 T25764 T25767 det the,promoter
R18364 T25765 T25767 nmod SerpinB2,promoter
R18365 T25766 T25767 amod proximal,promoter
R18366 T25767 T25763 pobj promoter,on
R18367 T25768 T25767 prep in,promoter
R18368 T25769 T25768 pobj vivo,in
R18369 T25770 T25771 auxpass was,determined
R18370 T25771 T25771 ROOT determined,determined
R18371 T25772 T25771 agent by,determined
R18372 T25773 T25774 compound chromatin,immunoprecipitation
R18373 T25774 T25772 pobj immunoprecipitation,by
R18374 T25775 T25776 punct (,ChIP
R18375 T25776 T25774 appos ChIP,immunoprecipitation
R18376 T25777 T25776 punct ),ChIP
R18377 T25778 T25774 conj assay,immunoprecipitation
R18378 T25779 T25771 punct .,determined
R18379 T25780 T25782 nummod RAW264,macrophages
R18380 T25781 T25782 nummod .7,macrophages
R18381 T25782 T25784 nsubjpass macrophages,treated
R18382 T25783 T25784 auxpass were,treated
R18383 T25784 T25784 ROOT treated,treated
R18384 T25785 T25784 prep in,treated
R18385 T25786 T25787 det the,presence
R18386 T25787 T25785 pobj presence,in
R18387 T25788 T25787 cc or,presence
R18388 T25789 T25787 conj absence,presence
R18389 T25790 T25789 prep of,absence
R18390 T25791 T25790 pobj LPS,of
R18391 T25792 T25784 prep for,treated
R18392 T25793 T25795 det the,times
R18393 T25794 T25795 amod indicated,times
R18394 T25795 T25792 pobj times,for
R18395 T25796 T25795 cc and,times
R18396 T25797 T25798 compound chromatin,immunoprecipitation
R18397 T25798 T25799 nsubj immunoprecipitation,performed
R18398 T25799 T25784 advcl performed,treated
R18399 T25800 T25799 advcl using,performed
R18400 T25801 T25800 dobj antibodies,using
R18401 T25802 T25800 prep against,using
R18402 T25803 T25802 pobj C/EBP,against
R18403 T25804 T25805 punct -,β
R18404 T25805 T25800 conj β,using
R18405 T25806 T25805 cc or,β
R18406 T25807 T25805 conj p-C/EBP,β
R18407 T25808 T25809 punct -,β
R18408 T25809 T25805 appos β,β
R18409 T25810 T25809 punct (,β
R18410 T25811 T25809 appos T217,β
R18411 T25812 T25809 punct ),β
R18412 T25813 T25784 punct .,treated
R18413 T25814 T25815 amod Soluble,chromatin
R18414 T25815 T25822 nsubjpass chromatin,immunoprecipitated
R18415 T25816 T25819 punct (,ng
R18416 T25817 T25818 dep 600,700
R18417 T25818 T25819 nummod 700,ng
R18418 T25819 T25815 appos ng,chromatin
R18419 T25820 T25819 punct ),ng
R18420 T25821 T25822 auxpass was,immunoprecipitated
R18421 T25822 T25822 ROOT immunoprecipitated,immunoprecipitated
R18422 T25823 T25822 prep with,immunoprecipitated
R18423 T25824 T25823 pobj antibodies,with
R18424 T25825 T25824 prep against,antibodies
R18425 T25826 T25825 pobj C/EBP,against
R18426 T25827 T25828 punct -,β
R18427 T25828 T25822 advcl β,immunoprecipitated
R18428 T25829 T25828 punct ",",β
R18429 T25830 T25832 compound p-C/EBP,β
R18430 T25831 T25832 punct -,β
R18431 T25832 T25828 appos β,β
R18432 T25833 T25832 punct (,β
R18433 T25834 T25832 appos T217,β
R18434 T25835 T25832 punct ),β
R18435 T25836 T25832 punct ",",β
R18436 T25837 T25839 compound RNA,II
R18437 T25838 T25839 compound Polymerase,II
R18438 T25839 T25832 appos II,β
R18439 T25840 T25839 punct (,II
R18440 T25841 T25839 appos RNAPII,II
R18441 T25842 T25839 punct ),II
R18442 T25843 T25839 punct ",",II
R18443 T25844 T25832 cc or,β
R18444 T25845 T25846 det a,rabbit
R18445 T25846 T25851 compound rabbit,control
R18446 T25847 T25851 compound IgG,control
R18447 T25848 T25849 punct (,rIgG
R18448 T25849 T25847 appos rIgG,IgG
R18449 T25850 T25849 punct ),rIgG
R18450 T25851 T25832 conj control,β
R18451 T25852 T25822 punct .,immunoprecipitated
R18452 T25853 T25854 punct (,A
R18453 T25854 T25854 ROOT A,A
R18454 T25855 T25854 punct ),A
R18455 T25856 T25858 amod Typical,pattern
R18456 T25857 T25858 compound PCR,pattern
R18457 T25858 T25859 nsubj pattern,obtained
R18458 T25859 T25859 ROOT obtained,obtained
R18459 T25860 T25859 prep in,obtained
R18460 T25861 T25862 compound ChIP,assays
R18461 T25862 T25860 pobj assays,in
R18462 T25863 T25859 advcl using,obtained
R18463 T25864 T25868 amod murine,primers
R18464 T25865 T25868 amod SerpinB2,primers
R18465 T25866 T25868 amod proximal,primers
R18466 T25867 T25868 amod promoter-specific,primers
R18467 T25868 T25863 dobj primers,using
R18468 T25869 T25872 punct ",",−
R18469 T25870 T25871 compound 338,/
R18470 T25871 T25872 nsubj /,−
R18471 T25872 T25872 ROOT −,−
R18472 T25873 T25872 nummod 315,−
R18473 T25874 T25872 cc and,−
R18474 T25875 T25877 meta −,/
R18475 T25876 T25877 nummod 5,/
R18476 T25877 T25872 conj /,−
R18477 T25878 T25877 nummod +19,/
R18478 T25879 T25877 punct ",",/
R18479 T25880 T25881 mark as,diagrammed
R18480 T25881 T25872 amod diagrammed,−
R18481 T25882 T25881 prep in,diagrammed
R18482 T25883 T25882 pobj top,in
R18483 T25884 T25859 punct .,obtained
R18484 T25885 T25892 nsubj Recruitment,suggests
R18485 T25886 T25885 prep of,Recruitment
R18486 T25887 T25886 pobj RNAPII,of
R18487 T25888 T25885 prep to,Recruitment
R18488 T25889 T25891 det the,promoter
R18489 T25890 T25891 compound SerpinB2,promoter
R18490 T25891 T25888 pobj promoter,to
R18491 T25892 T25892 ROOT suggests,suggests
R18492 T25893 T25894 amod active,transcription
R18493 T25894 T25892 dobj transcription,suggests
R18494 T25895 T25894 acl following,transcription
R18495 T25896 T25897 compound LPS,stimulation
R18496 T25897 T25895 dobj stimulation,following
R18497 T25898 T25892 punct .,suggests
R18498 T25899 T25900 amod Minimal,background
R18499 T25900 T25902 nsubjpass background,detected
R18500 T25901 T25902 auxpass was,detected
R18501 T25902 T25902 ROOT detected,detected
R18502 T25903 T25902 advcl using,detected
R18503 T25904 T25907 det the,control
R18504 T25905 T25907 compound rabbit,control
R18505 T25906 T25907 compound IgG,control
R18506 T25907 T25903 dobj control,using
R18507 T25908 T25902 punct ",",detected
R18508 T25909 T25902 advcl indicative,detected
R18509 T25910 T25909 prep of,indicative
R18510 T25911 T25912 det the,specificity
R18511 T25912 T25910 pobj specificity,of
R18512 T25913 T25912 prep of,specificity
R18513 T25914 T25916 det the,reaction
R18514 T25915 T25916 compound ChIP,reaction
R18515 T25916 T25913 pobj reaction,of
R18516 T25917 T25902 punct .,detected
R18517 T25918 T25922 punct (,analysis
R18518 T25919 T25922 nmod B,analysis
R18519 T25920 T25919 punct ),B
R18520 T25921 T25922 compound qPCR,analysis
R18521 T25922 T25922 ROOT analysis,analysis
R18522 T25923 T25922 prep of,analysis
R18523 T25924 T25923 pobj chromatin,of
R18524 T25925 T25922 dep immunoprecipitated,analysis
R18525 T25926 T25925 prep with,immunoprecipitated
R18526 T25927 T25926 pobj antibodies,with
R18527 T25928 T25927 prep against,antibodies
R18528 T25929 T25928 pobj C/EBP,against
R18529 T25930 T25931 punct -,β
R18530 T25931 T25922 appos β,analysis
R18531 T25932 T25931 punct ",",β
R18532 T25933 T25935 compound p-C/EBP,β
R18533 T25934 T25935 punct -,β
R18534 T25935 T25931 appos β,β
R18535 T25936 T25935 punct (,β
R18536 T25937 T25935 appos T217,β
R18537 T25938 T25935 punct ),β
R18538 T25939 T25931 punct ",",β
R18539 T25940 T25931 cc and,β
R18540 T25941 T25943 det the,control
R18541 T25942 T25943 compound rIgG,control
R18542 T25943 T25931 conj control,β
R18543 T25944 T25922 punct .,analysis
R18544 T25945 T25946 det The,data
R18545 T25946 T25948 nsubjpass data,represented
R18546 T25947 T25948 auxpass are,represented
R18547 T25948 T25948 ROOT represented,represented
R18548 T25949 T25948 oprd relative,represented
R18549 T25950 T25948 prep to,represented
R18550 T25951 T25952 compound rIgG,signal
R18551 T25952 T25950 pobj signal,to
R18552 T25953 T25948 advcl using,represented
R18553 T25954 T25956 det the,method
R18554 T25955 T25956 amod 2-ΔΔCt,method
R18555 T25956 T25953 dobj method,using
R18556 T25957 T25948 punct .,represented

2_test

Id Subject Object Predicate Lexical cue
23472114-21257317-87899182 931-933 21257317 denotes 63
23472114-17433708-87899183 937-939 17433708 denotes 64
23472114-17855774-87899184 1110-1112 17855774 denotes 65
T26631 931-933 21257317 denotes 63
T90386 937-939 17433708 denotes 64
T54308 1110-1112 17855774 denotes 65

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15036 1039-1046 NN denotes isoform
T25577 2837-2843 NN denotes method
T25576 2830-2836 NN denotes 2-ΔΔCt
T25575 2826-2829 DT denotes the
T25574 2820-2825 VB denotes using
T25573 2813-2819 NN denotes signal
T25572 2808-2812 NN denotes rIgG
T25571 2805-2807 TO denotes to
T25570 2796-2804 JJ denotes relative
T25569 2784-2795 VB denotes represented
T25568 2780-2783 VB denotes are
T25567 2775-2779 NN denotes data
T25566 2771-2774 DT denotes The
T25565 2762-2769 NN denotes control
T25564 2757-2761 NN denotes rIgG
T25563 2753-2756 DT denotes the
T25562 2749-2752 CC denotes and
T25561 2747-2748 -COMMA- denotes ,
T25560 2746-2747 -RRB- denotes )
T25559 2742-2746 NN denotes T217
T25558 2741-2742 -LRB- denotes (
T25557 2731-2740 NN denotes p-C/EBP-β
T25556 2729-2730 -COMMA- denotes ,
T25555 2722-2729 NN denotes C/EBP-β
T25554 2714-2721 IN denotes against
T25553 2703-2713 NN denotes antibodies
T25552 2698-2702 IN denotes with
T25551 2679-2697 VB denotes immunoprecipitated
T25550 2669-2678 NN denotes chromatin
T25549 2666-2668 IN denotes of
T25548 2657-2665 NN denotes analysis
T25547 2652-2656 NN denotes qPCR
T25546 2650-2651 -RRB- denotes )
T25545 2649-2650 NN denotes B
T25544 2648-2649 -LRB- denotes (
T25543 2638-2647 NN denotes reaction.
T25542 2633-2637 NN denotes ChIP
T25541 2629-2632 DT denotes the
T25540 2626-2628 IN denotes of
T25539 2614-2625 NN denotes specificity
T25538 2610-2613 DT denotes the
T25537 2607-2609 IN denotes of
T25536 2596-2606 JJ denotes indicative
T25535 2594-2595 -COMMA- denotes ,
T25534 2587-2594 NN denotes control
T25533 2583-2586 NN denotes IgG
T25532 2576-2582 NN denotes rabbit
T25531 2572-2575 DT denotes the
T25530 2566-2571 VB denotes using
T25529 2557-2565 VB denotes detected
T25528 2553-2556 VB denotes was
T25527 2542-2552 NN denotes background
T25526 2534-2541 JJ denotes Minimal
T25525 2521-2532 NN denotes stimulation
T25524 2517-2520 NN denotes LPS
T25523 2507-2516 VB denotes following
T25522 2493-2506 NN denotes transcription
T25521 2486-2492 JJ denotes active
T25520 2477-2485 VB denotes suggests
T25519 2468-2476 NN denotes promoter
T25518 2459-2467 NN denotes SerpinB2
T25517 2455-2458 DT denotes the
T25516 2452-2454 TO denotes to
T25515 2445-2451 NN denotes RNAPII
T25514 2442-2444 IN denotes of
T25513 2430-2441 NN denotes Recruitment
T25512 2425-2428 NN denotes top
T25511 2422-2424 IN denotes in
T25510 2411-2421 VB denotes diagrammed
T25509 2408-2410 IN denotes as
T25508 2406-2407 -COMMA- denotes ,
T25507 2400-2406 CD denotes −5/+19
T25506 2396-2399 CC denotes and
T25505 2387-2395 CD denotes 338/−315
T25504 2385-2386 -COMMA- denotes ,
T25503 2378-2385 NN denotes primers
T25502 2360-2377 JJ denotes promoter-specific
T25501 2351-2359 JJ denotes proximal
T25500 2342-2350 NN denotes SerpinB2
T25499 2335-2341 JJ denotes murine
T25498 2329-2334 VB denotes using
T25497 2322-2328 NN denotes assays
T25496 2317-2321 NN denotes ChIP
T25495 2314-2316 IN denotes in
T25494 2305-2313 VB denotes obtained
T25493 2297-2304 NN denotes pattern
T25492 2293-2296 NN denotes PCR
T25491 2285-2292 JJ denotes Typical
T25490 2283-2284 -RRB- denotes )
T25489 2282-2283 NN denotes A
T25488 2281-2282 -LRB- denotes (
T25487 2272-2280 NN denotes control.
T25486 2270-2271 -RRB- denotes )
T25485 2266-2270 NN denotes rIgG
T25484 2265-2266 -LRB- denotes (
T25483 2261-2264 NN denotes IgG
T25482 2254-2260 NN denotes rabbit
T25481 2252-2253 DT denotes a
T25480 2249-2251 CC denotes or
T25479 2247-2248 -COMMA- denotes ,
T25478 2246-2247 -RRB- denotes )
T25477 2240-2246 NN denotes RNAPII
T25476 2239-2240 -LRB- denotes (
T25475 2236-2238 CD denotes II
T25474 2225-2235 NN denotes Polymerase
T25473 2221-2224 NN denotes RNA
T25472 2219-2220 -COMMA- denotes ,
T25471 2218-2219 -RRB- denotes )
T25470 2214-2218 NN denotes T217
T25469 2213-2214 -LRB- denotes (
T25468 2203-2212 NN denotes p-C/EBP-β
T25467 2201-2202 -COMMA- denotes ,
T25466 2194-2201 NN denotes C/EBP-β
T25465 2186-2193 IN denotes against
T25464 2175-2185 NN denotes antibodies
T25463 2170-2174 IN denotes with
T25462 2151-2169 VB denotes immunoprecipitated
T25461 2147-2150 VB denotes was
T25460 2145-2146 -RRB- denotes )
T25459 2143-2145 NN denotes ng
T25458 2135-2142 CD denotes 600–700
T25457 2134-2135 -LRB- denotes (
T25456 2124-2133 NN denotes chromatin
T25455 2116-2123 JJ denotes Soluble
T25454 2113-2114 -RRB- denotes )
T25453 2109-2113 NN denotes T217
T25452 2108-2109 -LRB- denotes (
T25451 2098-2107 NN denotes p-C/EBP-β
T25450 2095-2097 CC denotes or
T25449 2087-2094 NN denotes C/EBP-β
T25448 2079-2086 IN denotes against
T25447 2068-2078 NN denotes antibodies
T25446 2062-2067 VB denotes using
T25445 2052-2061 VB denotes performed
T25444 2032-2051 NN denotes immunoprecipitation
T25443 2022-2031 NN denotes chromatin
T25442 2018-2021 CC denotes and
T25441 2012-2017 NN denotes times
T25440 2002-2011 VB denotes indicated
T25439 1998-2001 DT denotes the
T25438 1994-1997 IN denotes for
T25437 1990-1993 NN denotes LPS
T25436 1987-1989 IN denotes of
T25435 1979-1986 NN denotes absence
T25434 1976-1978 CC denotes or
T25433 1967-1975 NN denotes presence
T25432 1963-1966 DT denotes the
T25431 1960-1962 IN denotes in
T25430 1952-1959 VB denotes treated
T25429 1947-1951 VB denotes were
T25428 1935-1946 NN denotes macrophages
T25427 1926-1934 NN denotes RAW264.7
T25426 1919-1924 NN denotes assay
T25425 1917-1918 -RRB- denotes )
T25424 1913-1917 NN denotes ChIP
T25423 1912-1913 -LRB- denotes (
T25422 1892-1911 NN denotes immunoprecipitation
T25421 1882-1891 NN denotes chromatin
T25420 1879-1881 IN denotes by
T25419 1868-1878 VB denotes determined
T25418 1864-1867 VB denotes was
T25417 1859-1863 FW denotes vivo
T25416 1856-1858 FW denotes in
T25415 1847-1855 NN denotes promoter
T25414 1838-1846 JJ denotes proximal
T25410 1812-1821 NN denotes occupancy
T25409 1805-1811 NN denotes factor
T25408 1791-1804 NN denotes Transcription
T25407 1785-1789 FW denotes vivo
T25406 1782-1784 FW denotes in
T25405 1773-1781 NN denotes promoter
T25404 1764-1772 NN denotes SerpinB2
T25403 1757-1763 JJ denotes murine
T25402 1753-1756 DT denotes the
T25401 1750-1752 TO denotes to
T25400 1738-1749 NN denotes C/EBP-βT217
T25399 1734-1737 CC denotes and
T25398 1726-1733 NN denotes C/EBP-β
T25397 1723-1725 IN denotes of
T25396 1711-1722 NN denotes recruitment
T25395 1698-1710 JJ denotes Differential
T25413 1829-1837 NN denotes SerpinB2
T25412 1825-1828 DT denotes the
T25411 1822-1824 IN denotes on
T15137 1649-1652 NN denotes LPS
T15136 1646-1648 TO denotes to
T15135 1637-1645 NN denotes response
T15134 1634-1636 IN denotes in
T15133 1625-1633 NN denotes promoter
T15132 1616-1624 NN denotes SerpinB2
T15131 1612-1615 DT denotes the
T15130 1607-1611 IN denotes from
T15129 1593-1606 NN denotes transcription
T15128 1583-1592 VB denotes increased
T15127 1579-1582 IN denotes for
T15126 1567-1578 JJ denotes responsible
T15125 1564-1566 VB denotes be
T15124 1560-1563 RB denotes not
T15123 1556-1559 MD denotes may
T15122 1548-1555 NN denotes C/EBP-β
T15121 1528-1547 JJ denotes T217-phosphorylated
T15120 1523-1527 IN denotes that
T15119 1514-1522 VB denotes indicate
T15118 1510-1513 CC denotes and
T15117 1508-1509 -COMMA- denotes ,
T15116 1497-1508 NN denotes recruitment
T15115 1483-1496 NN denotes p-C/EBP-βT217
T15114 1479-1482 CC denotes and
T15113 1471-1478 NN denotes C/EBP-β
T15112 1463-1470 IN denotes between
T15111 1450-1462 NN denotes relationship
T15110 1442-1449 JJ denotes inverse
T15109 1439-1441 DT denotes an
T15108 1434-1438 VB denotes show
T15107 1429-1433 NN denotes data
T15106 1423-1428 DT denotes These
T15105 1420-1421 -RRB- denotes )
T15104 1419-1420 CD denotes 7
T15103 1414-1418 NN denotes Fig.
T15102 1413-1414 -LRB- denotes (
T15101 1412-1413 -RRB- denotes )
T15100 1409-1412 NN denotes hrs
T15099 1407-1408 CD denotes 8
T15098 1403-1406 CC denotes and
T15097 1401-1402 CD denotes 4
T15096 1400-1401 -LRB- denotes (
T15095 1389-1399 NN denotes timepoints
T15094 1383-1388 JJ denotes later
T15093 1380-1382 IN denotes at
T15092 1368-1379 NN denotes stimulation
T15091 1364-1367 NN denotes LPS
T15090 1359-1363 IN denotes with
T15089 1348-1358 VB denotes diminished
T15088 1339-1347 NN denotes promoter
T15087 1330-1338 JJ denotes proximal
T15086 1321-1329 NN denotes SerpinB2
T15085 1317-1320 DT denotes the
T15084 1313-1316 IN denotes for
T15083 1299-1312 NN denotes p-C/EBP-βT217
T15082 1296-1298 IN denotes of
T15081 1287-1295 NN denotes affinity
T15080 1279-1286 NN denotes binding
T15079 1275-1278 DT denotes the
T15078 1273-1274 -COMMA- denotes ,
T15077 1266-1273 NN denotes C/EBP-β
T15076 1260-1265 JJ denotes total
T15075 1257-1259 TO denotes to
T15074 1248-1256 NN denotes contrast
T15073 1245-1247 IN denotes In
T15072 1224-1225 -RRB- denotes t
T15071 1223-1224 CD denotes s
T15070 1219-1223 NN denotes LPS
T15069 1217-1218 -LRB- denotes f
T15068 1206-1217 NN denotes fter 1 hr o
T15067 1203-1206 NN denotes t a
T15066 1201-1203 IN denotes en
T15065 1199-1201 NN denotes es
T15064 1198-1199 CD denotes r
T15063 1193-1198 IN denotes lso p
T15062 1186-1193 JJ denotes r and a
T15061 1182-1186 RB denotes mote
T15060 1179-1182 CC denotes pro
T15059 1170-1178 NN denotes proximal
T15058 1162-1170 JJ denotes erpinB2
T15057 1154-1162 NN denotes to the S
T15056 1150-1153 DT denotes und
T15055 1148-1150 TO denotes bo
T15054 1143-1148 VB denotes vely
T15053 1129-1143 RB denotes was constituti
T15052 1126-1129 VB denotes 17
T15051 1113-1126 NN denotes . p-C/EBP-βT2
T15050 1112-1113 -RRB- denotes ]
T15049 1110-1112 CD denotes 65
T15048 1109-1110 -LRB- denotes [
T15047 1100-1108 NN denotes survival
T15046 1095-1099 NN denotes cell
T15045 1090-1094 IN denotes with
T15044 1079-1089 VB denotes associated
T15043 1074-1078 VB denotes been
T15042 1070-1073 VB denotes has
T15041 1064-1069 WDT denotes which
T15040 1062-1063 -COMMA- denotes ,
T15039 1061-1062 -RRB- denotes )
T15038 1048-1061 NN denotes p-C/EBP-βT217
T15037 1047-1048 -LRB- denotes (
T15035 1031-1038 NN denotes C/EBP-β
T15034 1016-1030 VB denotes phosphorylated
T15033 1011-1015 NN denotes T217
T15032 1007-1010 DT denotes the
T15031 1004-1006 IN denotes of
T15030 995-1003 NN denotes promoter
T15029 986-994 JJ denotes proximal
T15028 977-985 NN denotes SerpinB2
T15027 973-976 DT denotes the
T15026 970-972 TO denotes to
T15025 958-969 NN denotes recruitment
T15024 945-957 VB denotes investigated
T15023 942-944 PRP denotes we
T15022 940-941 -COMMA- denotes ,
T15021 939-940 -RRB- denotes ]
T15020 937-939 CD denotes 64
T15019 936-937 -LRB- denotes [
T15018 934-935 -COLON- denotes ;
T15017 933-934 -RRB- denotes ]
T15016 931-933 CD denotes 63
T15015 930-931 -LRB- denotes [
T15014 928-929 -COLON- denotes ;
T15013 927-928 -RRB- denotes ]
T15012 925-927 CD denotes 38
T15011 924-925 -LRB- denotes [
T15010 918-923 NN denotes genes
T15009 911-917 NN denotes target
T15008 897-910 VB denotes transactivate
T15007 894-896 TO denotes to
T15006 886-893 NN denotes ability
T15005 876-885 JJ denotes C/EBP-β’s
T15004 869-875 VB denotes affect
T15003 865-868 MD denotes can
T15002 858-864 NN denotes states
T15001 842-857 NN denotes phosphorylation
T15000 834-841 NN denotes C/EBP-β
T14999 831-833 IN denotes in
T14998 823-830 NN denotes changes
T14997 817-822 IN denotes Since
T14996 814-815 -RRB- denotes )
T14995 813-814 CD denotes 7
T14994 808-812 NNP denotes Fig.
T14993 807-808 -LRB- denotes (
T14992 803-806 NN denotes hrs
T14991 801-802 CD denotes 8
T14990 795-800 IN denotes after
T14989 789-794 NN denotes cells
T14988 776-788 JJ denotes unstimulated
T14987 771-775 IN denotes over
T14986 763-770 RB denotes 10-fold
T14985 760-762 IN denotes as
T14984 755-759 RB denotes much
T14983 752-754 RB denotes as
T14982 743-751 VB denotes reaching
T14981 739-742 NN denotes LPS
T14980 736-738 TO denotes to
T14979 727-735 NN denotes response
T14978 724-726 IN denotes in
T14977 713-723 RB denotes temporally
T14976 703-712 VB denotes increased
T14975 699-702 CC denotes and
T14974 687-698 NN denotes macrophages
T14973 674-686 JJ denotes unstimulated
T14972 671-673 IN denotes in
T14971 662-670 NN denotes promoter
T14970 658-661 DT denotes the
T14969 653-657 IN denotes with
T14968 641-652 NN denotes association
T14967 637-640 PRP-DOLLAR- denotes its
T14966 634-636 IN denotes by
T14965 621-633 VB denotes demonstrated
T14964 618-620 IN denotes as
T14963 609-617 NN denotes promoter
T14962 600-608 NN denotes SerpinB2
T14961 596-599 DT denotes the
T14960 593-595 IN denotes at
T14959 585-592 JJ denotes present
T14958 570-584 RB denotes constitutively
T14957 567-569 VB denotes is
T14956 559-566 NN denotes C/EBP-β
T14955 554-558 IN denotes that
T14954 547-553 VB denotes showed
T14953 539-546 NN denotes results
T14952 535-538 DT denotes The
T14951 532-533 -RRB- denotes )
T14950 530-532 NN denotes 4A
T14949 525-528 NN denotes fig
T14948 522-524 IN denotes in
T14947 510-521 VB denotes illustrated
T14946 509-510 -LRB- denotes (
T14945 501-508 NN denotes primers
T14944 492-500 JJ denotes specific
T14943 483-491 NN denotes promoter
T14942 474-482 JJ denotes proximal
T14941 465-473 NN denotes SerpinB2
T14940 459-464 VB denotes using
T14939 454-458 NN denotes qPCR
T14938 450-453 CC denotes and
T14937 432-449 JJ denotes semi-quantitative
T14936 427-431 CC denotes both
T14935 424-426 IN denotes by
T14934 414-423 VB denotes amplified
T14933 410-413 NN denotes DNA
T14932 401-409 VB denotes enriched
T14931 397-400 DT denotes the
T14930 393-396 CC denotes and
T14929 391-392 -COMMA- denotes ,
T14928 383-391 NN denotes proteins
T14927 375-382 NN denotes binding
T14926 371-374 NN denotes DNA
T14925 363-370 IN denotes against
T14924 352-362 NN denotes antibodies
T14923 347-351 IN denotes with
T14922 328-346 VB denotes immunoprecipitated
T14921 324-327 VB denotes was
T14920 314-323 NN denotes chromatin
T14919 306-313 JJ denotes soluble
T14918 304-305 -COMMA- denotes ,
T14917 301-304 NN denotes hrs
T14916 299-300 CD denotes 8
T14915 296-298 TO denotes to
T14914 293-295 RB denotes up
T14913 289-292 IN denotes for
T14912 285-288 NN denotes LPS
T14911 280-284 IN denotes with
T14910 269-279 VB denotes stimulated
T14909 264-268 VB denotes were
T14908 258-263 NN denotes cells
T14907 252-257 CD denotes 264.7
T14906 248-251 NN denotes RAW
T14905 245-246 -RRB- denotes )
T14904 241-245 NN denotes ChIP
T14903 240-241 -LRB- denotes (
T14902 220-239 NN denotes immunoprecipitation
T14901 210-219 NN denotes chromatin
T14900 207-209 IN denotes by
T14899 202-206 FW denotes vivo
T14898 199-201 FW denotes in
T14897 195-198 NN denotes LPS
T14896 192-194 TO denotes to
T14895 183-191 NN denotes response
T14894 180-182 IN denotes in
T14893 171-179 NN denotes promoter
T14892 162-170 NN denotes SerpinB2
T14891 155-161 JJ denotes murine
T14890 151-154 DT denotes the
T14889 148-150 TO denotes to
T14888 136-147 NN denotes recruitment
T14887 128-135 NN denotes C/EBP-β
T14886 125-127 IN denotes of
T14885 116-124 NN denotes dynamics
T14884 107-115 JJ denotes temporal
T14883 103-106 DT denotes the
T14882 90-102 VB denotes investigated
T14881 87-89 PRP denotes We
T14880 80-86 NN denotes Manner
T14879 66-79 JJ denotes LPS-inducible
T14878 63-65 DT denotes an
T14877 60-62 IN denotes in
T14876 55-59 FW denotes vivo
T14875 52-54 FW denotes in
T14874 43-51 NN denotes Promoter
T14873 34-42 JJ denotes Proximal
T14872 25-33 NN denotes SerpinB2
T14871 18-24 NNP denotes Murine
T14870 14-17 DT denotes the
T14869 8-13 VB denotes Binds
T14868 0-7 NN denotes C/EBP-β
R10903 T14868 T14869 arg1Of C/EBP-β,Binds
R10904 T14869 T14877 arg1Of Binds,in
R10905 T14874 T14869 arg2Of Promoter,Binds
R10906 T14874 T14870 arg1Of Promoter,the
R10907 T14874 T14871 arg1Of Promoter,Murine
R10908 T14874 T14872 arg1Of Promoter,SerpinB2
R10909 T14874 T14873 arg1Of Promoter,Proximal
R10910 T14874 T14876 arg1Of Promoter,vivo
R10911 T14876 T14875 arg1Of vivo,in
R10912 T14880 T14877 arg2Of Manner,in
R10913 T14880 T14878 arg1Of Manner,an
R10914 T14880 T14879 arg1Of Manner,LPS-inducible
R10915 T14881 T14882 arg1Of We,investigated
R10916 T14882 T14889 arg1Of investigated,to
R10917 T14882 T14894 arg1Of investigated,in
R10918 T14885 T14882 arg2Of dynamics,investigated
R10919 T14885 T14883 arg1Of dynamics,the
R10920 T14885 T14884 arg1Of dynamics,temporal
R10921 T14885 T14886 arg1Of dynamics,of
R10922 T14888 T14886 arg2Of recruitment,of
R10923 T14888 T14887 arg1Of recruitment,C/EBP-β
R10924 T14893 T14889 arg2Of promoter,to
R10925 T14893 T14890 arg1Of promoter,the
R10926 T14893 T14891 arg1Of promoter,murine
R10927 T14893 T14892 arg1Of promoter,SerpinB2
R10928 T14895 T14894 arg2Of response,in
R10929 T14895 T14896 arg1Of response,to
R10930 T14897 T14896 arg2Of LPS,to
R10931 T14897 T14899 arg1Of LPS,vivo
R10932 T14897 T14900 arg1Of LPS,by
R10933 T14899 T14898 arg1Of vivo,in
R10934 T14902 T14900 arg2Of immunoprecipitation,by
R10935 T14902 T14901 arg1Of immunoprecipitation,chromatin
R10936 T14902 T14903 arg1Of immunoprecipitation,(
R10937 T14904 T14903 arg2Of ChIP,(
R10938 T14905 T14903 arg3Of ),(
R10939 T14908 T14906 arg1Of cells,RAW
R10940 T14908 T14907 arg1Of cells,264.7
R10941 T14908 T14909 arg1Of cells,were
R10942 T14908 T14910 arg2Of cells,stimulated
R10943 T14910 T14909 arg2Of stimulated,were
R10944 T14910 T14911 arg1Of stimulated,with
R10945 T14910 T14913 arg1Of stimulated,for
R10946 T14910 T14918 arg1Of stimulated,","
R10947 T14912 T14911 arg2Of LPS,with
R10948 T14916 T14914 arg1Of 8,up
R10949 T14916 T14915 arg1Of 8,to
R10950 T14917 T14913 arg2Of hrs,for
R10951 T14917 T14916 arg1Of hrs,8
R10952 T14918 T14930 arg1Of ",",and
R10953 T14920 T14919 arg1Of chromatin,soluble
R10954 T14920 T14921 arg1Of chromatin,was
R10955 T14920 T14922 arg2Of chromatin,immunoprecipitated
R10956 T14922 T14918 arg2Of immunoprecipitated,","
R10957 T14922 T14921 arg2Of immunoprecipitated,was
R10958 T14922 T14923 arg1Of immunoprecipitated,with
R10959 T14922 T14925 arg1Of immunoprecipitated,against
R10960 T14924 T14923 arg2Of antibodies,with
R10961 T14928 T14925 arg2Of proteins,against
R10962 T14928 T14926 arg1Of proteins,DNA
R10963 T14928 T14927 arg1Of proteins,binding
R10964 T14930 T14929 arg1Of and,","
R10965 T14933 T14931 arg1Of DNA,the
R10966 T14933 T14932 arg2Of DNA,enriched
R10967 T14933 T14934 arg2Of DNA,amplified
R10968 T14933 T14946 arg1Of DNA,(
R10969 T14933 T14947 arg2Of DNA,illustrated
R10970 T14939 T14934 arg1Of qPCR,amplified
R10971 T14939 T14935 arg2Of qPCR,by
R10972 T14939 T14936 arg1Of qPCR,both
R10973 T14939 T14937 arg1Of qPCR,semi-quantitative
R10974 T14939 T14938 arg1Of qPCR,and
R10975 T14939 T14940 arg1Of qPCR,using
R10976 T14945 T14940 arg2Of primers,using
R10977 T14945 T14941 arg1Of primers,SerpinB2
R10978 T14945 T14942 arg1Of primers,proximal
R10979 T14945 T14943 arg1Of primers,promoter
R10980 T14945 T14944 arg1Of primers,specific
R10981 T14947 T14930 arg2Of illustrated,and
R10982 T14947 T14948 arg1Of illustrated,in
R10983 T14949 T14948 arg2Of fig,in
R10984 T14950 T14951 arg1Of 4A,)
R10985 T14953 T14952 arg1Of results,The
R10986 T14953 T14954 arg1Of results,showed
R10987 T14956 T14957 arg1Of C/EBP-β,is
R10988 T14956 T14959 arg1Of C/EBP-β,present
R10989 T14957 T14954 arg2Of is,showed
R10990 T14957 T14955 arg1Of is,that
R10991 T14957 T14964 arg1Of is,as
R10992 T14959 T14957 arg2Of present,is
R10993 T14959 T14958 arg1Of present,constitutively
R10994 T14959 T14960 arg1Of present,at
R10995 T14963 T14960 arg2Of promoter,at
R10996 T14963 T14961 arg1Of promoter,the
R10997 T14963 T14962 arg1Of promoter,SerpinB2
R10998 T14965 T14975 arg1Of demonstrated,and
R10999 T14968 T14965 arg1Of association,demonstrated
R11000 T14968 T14966 arg2Of association,by
R11001 T14968 T14967 arg1Of association,its
R11002 T14968 T14969 arg1Of association,with
R11003 T14968 T14972 arg1Of association,in
R11004 T14971 T14969 arg2Of promoter,with
R11005 T14971 T14970 arg1Of promoter,the
R11006 T14974 T14972 arg2Of macrophages,in
R11007 T14974 T14973 arg1Of macrophages,unstimulated
R11008 T14975 T14964 arg2Of and,as
R11009 T14976 T14975 arg2Of increased,and
R11010 T14976 T14977 arg1Of increased,temporally
R11011 T14976 T14978 arg1Of increased,in
R11012 T14979 T14978 arg2Of response,in
R11013 T14979 T14980 arg1Of response,to
R11014 T14981 T14980 arg2Of LPS,to
R11015 T14981 T14982 arg1Of LPS,reaching
R11016 T14982 T14984 arg1Of reaching,much
R11017 T14982 T14987 arg1Of reaching,over
R11018 T14982 T14990 arg1Of reaching,after
R11019 T14982 T14993 arg1Of reaching,(
R11020 T14984 T14983 arg1Of much,as
R11021 T14984 T14985 arg1Of much,as
R11022 T14986 T14985 arg2Of 10-fold,as
R11023 T14989 T14987 arg2Of cells,over
R11024 T14989 T14988 arg1Of cells,unstimulated
R11025 T14992 T14990 arg2Of hrs,after
R11026 T14992 T14991 arg1Of hrs,8
R11027 T14994 T14993 arg2Of Fig.,(
R11028 T14994 T14995 arg1Of Fig.,7
R11029 T14996 T14993 arg3Of ),(
R11030 T14998 T14999 arg1Of changes,in
R11031 T14998 T15003 arg1Of changes,can
R11032 T14998 T15004 arg1Of changes,affect
R11033 T15002 T14999 arg2Of states,in
R11034 T15002 T15000 arg1Of states,C/EBP-β
R11035 T15002 T15001 arg1Of states,phosphorylation
R11036 T15004 T14997 arg2Of affect,Since
R11037 T15004 T15003 arg2Of affect,can
R11038 T15004 T15014 arg1Of affect,;
R11039 T15004 T15015 arg1Of affect,[
R11040 T15004 T15018 arg1Of affect,;
R11041 T15004 T15019 arg1Of affect,[
R11042 T15006 T15004 arg2Of ability,affect
R11043 T15006 T15005 arg1Of ability,C/EBP-β’s
R11044 T15006 T15007 modOf ability,to
R11045 T15008 T15007 arg1Of transactivate,to
R11046 T15010 T15008 arg2Of genes,transactivate
R11047 T15010 T15009 arg1Of genes,target
R11048 T15010 T15011 arg1Of genes,[
R11049 T15012 T15011 arg2Of 38,[
R11050 T15013 T15011 arg3Of ],[
R11051 T15016 T15015 arg2Of 63,[
R11052 T15017 T15015 arg3Of ],[
R11053 T15020 T15019 arg2Of 64,[
R11054 T15021 T15019 arg3Of ],[
R11055 T15023 T15024 arg1Of we,investigated
R11056 T15024 T14997 arg1Of investigated,Since
R11057 T15024 T15022 arg1Of investigated,","
R11058 T15025 T15024 arg2Of recruitment,investigated
R11059 T15025 T15026 arg1Of recruitment,to
R11060 T15025 T15040 arg1Of recruitment,","
R11061 T15025 T15041 arg1Of recruitment,which
R11062 T15025 T15042 arg1Of recruitment,has
R11063 T15025 T15043 arg1Of recruitment,been
R11064 T15025 T15044 arg2Of recruitment,associated
R11065 T15030 T15026 arg2Of promoter,to
R11066 T15030 T15027 arg1Of promoter,the
R11067 T15030 T15028 arg1Of promoter,SerpinB2
R11068 T15030 T15029 arg1Of promoter,proximal
R11069 T15030 T15031 arg1Of promoter,of
R11070 T15036 T15031 arg2Of isoform,of
R11071 T15036 T15032 arg1Of isoform,the
R11072 T15036 T15033 arg1Of isoform,T217
R11073 T15036 T15034 arg2Of isoform,phosphorylated
R11074 T15036 T15035 arg1Of isoform,C/EBP-β
R11075 T15036 T15037 arg1Of isoform,(
R11076 T15038 T15037 arg2Of p-C/EBP-βT217,(
R11077 T15039 T15037 arg3Of ),(
R11078 T15044 T15042 arg2Of associated,has
R11079 T15044 T15043 arg2Of associated,been
R11080 T15044 T15045 arg1Of associated,with
R11081 T15047 T15045 arg2Of survival,with
R11082 T15047 T15046 arg1Of survival,cell
R11083 T15047 T15052 modOf survival,17
R11084 T15049 T15048 arg2Of 65,[
R11085 T15050 T15048 arg3Of ],[
R11086 T15051 T15048 arg1Of . p-C/EBP-βT2,[
R11087 T15051 T15052 arg1Of . p-C/EBP-βT2,17
R11088 T15051 T15054 arg2Of . p-C/EBP-βT2,vely
R11089 T15054 T15052 arg2Of vely ,17
R11090 T15054 T15053 arg1Of vely ,was constituti
R11091 T15054 T15055 arg1Of vely ,bo
R11092 T15058 T15059 arg1Of erpinB2 ,proximal
R11093 T15058 T15060 arg1Of erpinB2 ,pro
R11094 T15062 T15060 arg2Of r and a,pro
R11095 T15062 T15061 arg1Of r and a,mote
R11096 T15062 T15063 arg1Of r and a,lso p
R11097 T15065 T15063 arg2Of es,lso p
R11098 T15065 T15064 arg1Of es,r
R11099 T15068 T15055 arg2Of fter 1 hr o,bo
R11100 T15068 T15056 arg1Of fter 1 hr o,und
R11101 T15068 T15057 arg1Of fter 1 hr o,to the S
R11102 T15068 T15058 arg1Of fter 1 hr o,erpinB2
R11103 T15068 T15062 arg1Of fter 1 hr o,r and a
R11104 T15068 T15066 arg1Of fter 1 hr o,en
R11105 T15068 T15067 arg1Of fter 1 hr o,t a
R11106 T15068 T15069 arg1Of fter 1 hr o,f
R11107 T15070 T15069 arg2Of LPS ,f
R11108 T15070 T15071 arg1Of LPS ,s
R11109 T15072 T15069 arg3Of t,f
R11110 T15074 T15073 arg2Of contrast,In
R11111 T15074 T15075 arg1Of contrast,to
R11112 T15077 T15075 arg2Of C/EBP-β,to
R11113 T15077 T15076 arg1Of C/EBP-β,total
R11114 T15081 T15079 arg1Of affinity,the
R11115 T15081 T15080 arg1Of affinity,binding
R11116 T15081 T15082 arg1Of affinity,of
R11117 T15081 T15089 arg1Of affinity,diminished
R11118 T15083 T15082 arg2Of p-C/EBP-βT217,of
R11119 T15083 T15084 arg1Of p-C/EBP-βT217,for
R11120 T15088 T15084 arg2Of promoter,for
R11121 T15088 T15085 arg1Of promoter,the
R11122 T15088 T15086 arg1Of promoter,SerpinB2
R11123 T15088 T15087 arg1Of promoter,proximal
R11124 T15089 T15073 arg1Of diminished,In
R11125 T15089 T15078 arg1Of diminished,","
R11126 T15089 T15090 arg1Of diminished,with
R11127 T15092 T15090 arg2Of stimulation,with
R11128 T15092 T15091 arg1Of stimulation,LPS
R11129 T15092 T15093 arg1Of stimulation,at
R11130 T15095 T15093 arg2Of timepoints,at
R11131 T15095 T15094 arg1Of timepoints,later
R11132 T15095 T15096 arg1Of timepoints,(
R11133 T15095 T15102 arg1Of timepoints,(
R11134 T15097 T15098 arg1Of 4,and
R11135 T15099 T15098 arg2Of 8,and
R11136 T15100 T15096 arg2Of hrs,(
R11137 T15100 T15097 arg1Of hrs,4
R11138 T15100 T15099 arg1Of hrs,8
R11139 T15101 T15096 arg3Of ),(
R11140 T15103 T15102 arg2Of Fig.,(
R11141 T15103 T15104 arg1Of Fig.,7
R11142 T15105 T15102 arg3Of ),(
R11143 T15107 T15106 arg1Of data,These
R11144 T15107 T15108 arg1Of data,show
R11145 T15107 T15119 arg1Of data,indicate
R11146 T15108 T15118 arg1Of show,and
R11147 T15111 T15108 arg2Of relationship,show
R11148 T15111 T15109 arg1Of relationship,an
R11149 T15111 T15110 arg1Of relationship,inverse
R11150 T15111 T15112 arg1Of relationship,between
R11151 T15113 T15114 arg1Of C/EBP-β,and
R11152 T15114 T15112 arg2Of and,between
R11153 T15116 T15114 arg2Of recruitment,and
R11154 T15116 T15115 arg1Of recruitment,p-C/EBP-βT217
R11155 T15118 T15117 arg1Of and,","
R11156 T15119 T15118 arg2Of indicate,and
R11157 T15122 T15121 arg1Of C/EBP-β,T217-phosphorylated
R11158 T15122 T15123 arg1Of C/EBP-β,may
R11159 T15122 T15125 arg1Of C/EBP-β,be
R11160 T15122 T15126 arg1Of C/EBP-β,responsible
R11161 T15125 T15119 arg2Of be,indicate
R11162 T15125 T15120 arg1Of be,that
R11163 T15125 T15123 arg2Of be,may
R11164 T15125 T15124 arg1Of be,not
R11165 T15126 T15125 arg2Of responsible,be
R11166 T15126 T15127 arg1Of responsible,for
R11167 T15129 T15127 arg2Of transcription,for
R11168 T15129 T15128 arg2Of transcription,increased
R11169 T15129 T15130 arg1Of transcription,from
R11170 T15129 T15134 arg1Of transcription,in
R11171 T15133 T15130 arg2Of promoter,from
R11172 T15133 T15131 arg1Of promoter,the
R11173 T15133 T15132 arg1Of promoter,SerpinB2
R11174 T15134 T15136 arg1Of in,to
R11175 T15135 T15134 arg2Of response,in
R11176 T15137 T15134 arg3Of LPS,in
R18137 T25396 T25395 arg1Of recruitment,Differential
R18138 T25396 T25397 arg1Of recruitment,of
R18139 T25396 T25401 arg1Of recruitment,to
R18140 T25396 T25407 arg1Of recruitment,vivo
R18141 T25398 T25399 arg1Of C/EBP-β,and
R18142 T25399 T25397 arg2Of and,of
R18143 T25400 T25399 arg2Of C/EBP-βT217,and
R18144 T25405 T25401 arg2Of promoter,to
R18145 T25405 T25402 arg1Of promoter,the
R18146 T25405 T25403 arg1Of promoter,murine
R18147 T25405 T25404 arg1Of promoter,SerpinB2
R18148 T25407 T25406 arg1Of vivo,in
R18149 T25410 T25408 arg1Of occupancy,Transcription
R18150 T25410 T25409 arg1Of occupancy,factor
R18151 T25410 T25411 arg1Of occupancy,on
R18152 T25410 T25418 arg1Of occupancy,was
R18153 T25410 T25419 arg2Of occupancy,determined
R18154 T25415 T25411 arg2Of promoter,on
R18155 T25415 T25412 arg1Of promoter,the
R18156 T25415 T25413 arg1Of promoter,SerpinB2
R18157 T25415 T25414 arg1Of promoter,proximal
R18158 T25415 T25417 arg1Of promoter,vivo
R18159 T25417 T25416 arg1Of vivo,in
R18160 T25419 T25418 arg2Of determined,was
R18161 T25422 T25421 arg1Of immunoprecipitation,chromatin
R18162 T25422 T25423 arg1Of immunoprecipitation,(
R18163 T25424 T25423 arg2Of ChIP,(
R18164 T25425 T25423 arg3Of ),(
R18165 T25426 T25419 arg1Of assay,determined
R18166 T25426 T25420 arg2Of assay,by
R18167 T25426 T25422 arg1Of assay,immunoprecipitation
R18168 T25428 T25427 arg1Of macrophages,RAW264.7
R18169 T25428 T25429 arg1Of macrophages,were
R18170 T25428 T25430 arg2Of macrophages,treated
R18171 T25430 T25429 arg2Of treated,were
R18172 T25430 T25431 arg1Of treated,in
R18173 T25430 T25446 modOf treated,using
R18174 T25433 T25434 arg1Of presence,or
R18175 T25434 T25431 arg2Of or,in
R18176 T25434 T25432 arg1Of or,the
R18177 T25434 T25436 arg1Of or,of
R18178 T25434 T25438 arg1Of or,for
R18179 T25435 T25434 arg2Of absence,or
R18180 T25437 T25436 arg2Of LPS,of
R18181 T25441 T25442 arg1Of times,and
R18182 T25443 T25442 arg2Of chromatin,and
R18183 T25444 T25438 arg2Of immunoprecipitation,for
R18184 T25444 T25439 arg1Of immunoprecipitation,the
R18185 T25444 T25440 arg2Of immunoprecipitation,indicated
R18186 T25444 T25441 arg1Of immunoprecipitation,times
R18187 T25444 T25443 arg1Of immunoprecipitation,chromatin
R18188 T25444 T25445 arg2Of immunoprecipitation,performed
R18189 T25446 T25448 arg1Of using,against
R18190 T25447 T25446 arg2Of antibodies,using
R18191 T25449 T25450 arg1Of C/EBP-β,or
R18192 T25450 T25448 arg2Of or,against
R18193 T25450 T25452 arg1Of or,(
R18194 T25451 T25450 arg2Of p-C/EBP-β,or
R18195 T25453 T25452 arg2Of T217,(
R18196 T25454 T25452 arg3Of ),(
R18197 T25456 T25455 arg1Of chromatin,Soluble
R18198 T25456 T25457 arg1Of chromatin,(
R18199 T25456 T25461 arg1Of chromatin,was
R18200 T25456 T25462 arg2Of chromatin,immunoprecipitated
R18201 T25459 T25457 arg2Of ng,(
R18202 T25459 T25458 arg1Of ng,600–700
R18203 T25460 T25457 arg3Of ),(
R18204 T25462 T25461 arg2Of immunoprecipitated,was
R18205 T25462 T25463 arg1Of immunoprecipitated,with
R18206 T25464 T25463 arg2Of antibodies,with
R18207 T25464 T25465 arg1Of antibodies,against
R18208 T25466 T25467 arg1Of C/EBP-β,","
R18209 T25466 T25472 arg1Of C/EBP-β,","
R18210 T25468 T25467 arg2Of p-C/EBP-β,","
R18211 T25468 T25469 arg1Of p-C/EBP-β,(
R18212 T25470 T25469 arg2Of T217,(
R18213 T25471 T25469 arg3Of ),(
R18214 T25472 T25480 arg1Of ",",or
R18215 T25474 T25472 arg2Of Polymerase,","
R18216 T25474 T25473 arg1Of Polymerase,RNA
R18217 T25474 T25475 arg1Of Polymerase,II
R18218 T25474 T25476 arg1Of Polymerase,(
R18219 T25477 T25476 arg2Of RNAPII,(
R18220 T25478 T25476 arg3Of ),(
R18221 T25480 T25465 arg2Of or,against
R18222 T25480 T25479 arg1Of or,","
R18223 T25485 T25484 arg2Of rIgG,(
R18224 T25486 T25484 arg3Of ),(
R18225 T25487 T25482 arg1Of control.,rabbit
R18226 T25487 T25483 arg1Of control.,IgG
R18227 T25487 T25484 arg1Of control.,(
R18228 T25487 T25488 arg1Of control.,(
R18229 T25489 T25488 arg2Of A,(
R18230 T25490 T25488 arg3Of ),(
R18231 T25493 T25480 arg2Of pattern,or
R18232 T25493 T25481 arg1Of pattern,a
R18233 T25493 T25487 arg1Of pattern,control.
R18234 T25493 T25491 arg1Of pattern,Typical
R18235 T25493 T25492 arg1Of pattern,PCR
R18236 T25493 T25494 arg2Of pattern,obtained
R18237 T25494 T25495 arg1Of obtained,in
R18238 T25494 T25508 arg1Of obtained,","
R18239 T25494 T25509 arg1Of obtained,as
R18240 T25497 T25495 arg2Of assays,in
R18241 T25497 T25496 arg1Of assays,ChIP
R18242 T25497 T25498 arg1Of assays,using
R18243 T25503 T25498 arg2Of primers,using
R18244 T25503 T25499 arg1Of primers,murine
R18245 T25503 T25500 arg1Of primers,SerpinB2
R18246 T25503 T25501 arg1Of primers,proximal
R18247 T25503 T25502 arg1Of primers,promoter-specific
R18248 T25503 T25504 arg1Of primers,","
R18249 T25505 T25506 arg1Of 338/−315,and
R18250 T25506 T25504 arg2Of and,","
R18251 T25507 T25506 arg2Of −5/+19,and
R18252 T25510 T25509 arg2Of diagrammed,as
R18253 T25510 T25511 arg1Of diagrammed,in
R18254 T25512 T25511 arg2Of top,in
R18255 T25513 T25514 arg1Of Recruitment,of
R18256 T25513 T25516 arg1Of Recruitment,to
R18257 T25513 T25520 arg1Of Recruitment,suggests
R18258 T25515 T25514 arg2Of RNAPII,of
R18259 T25519 T25516 arg2Of promoter,to
R18260 T25519 T25517 arg1Of promoter,the
R18261 T25519 T25518 arg1Of promoter,SerpinB2
R18262 T25520 T25523 arg1Of suggests,following
R18263 T25522 T25520 arg2Of transcription,suggests
R18264 T25522 T25521 arg1Of transcription,active
R18265 T25525 T25523 arg2Of stimulation,following
R18266 T25525 T25524 arg1Of stimulation,LPS
R18267 T25527 T25526 arg1Of background,Minimal
R18268 T25527 T25528 arg1Of background,was
R18269 T25527 T25529 arg2Of background,detected
R18270 T25527 T25530 arg1Of background,using
R18271 T25529 T25528 arg2Of detected,was
R18272 T25530 T25529 arg3Of using,detected
R18273 T25530 T25535 arg1Of using,","
R18274 T25530 T25536 arg1Of using,indicative
R18275 T25534 T25530 arg2Of control,using
R18276 T25534 T25531 arg1Of control,the
R18277 T25534 T25532 arg1Of control,rabbit
R18278 T25534 T25533 arg1Of control,IgG
R18279 T25536 T25537 arg1Of indicative,of
R18280 T25539 T25537 arg2Of specificity,of
R18281 T25539 T25538 arg1Of specificity,the
R18282 T25539 T25540 arg1Of specificity,of
R18283 T25539 T25549 arg1Of specificity,of
R18284 T25545 T25544 arg2Of B,(
R18285 T25546 T25544 arg3Of ),(
R18286 T25548 T25540 arg2Of analysis,of
R18287 T25548 T25541 arg1Of analysis,the
R18288 T25548 T25542 arg1Of analysis,ChIP
R18289 T25548 T25543 arg1Of analysis,reaction.
R18290 T25548 T25544 arg1Of analysis,(
R18291 T25548 T25547 arg1Of analysis,qPCR
R18292 T25550 T25549 arg2Of chromatin,of
R18293 T25550 T25551 arg2Of chromatin,immunoprecipitated
R18294 T25551 T25552 arg1Of immunoprecipitated,with
R18295 T25553 T25552 arg2Of antibodies,with
R18296 T25553 T25554 arg1Of antibodies,against
R18297 T25555 T25556 arg1Of C/EBP-β,","
R18298 T25555 T25562 arg1Of C/EBP-β,and
R18299 T25557 T25556 arg2Of p-C/EBP-β,","
R18300 T25557 T25558 arg1Of p-C/EBP-β,(
R18301 T25559 T25558 arg2Of T217,(
R18302 T25560 T25558 arg3Of ),(
R18303 T25562 T25554 arg2Of and,against
R18304 T25562 T25561 arg1Of and,","
R18305 T25565 T25562 arg2Of control,and
R18306 T25565 T25563 arg1Of control,the
R18307 T25565 T25564 arg1Of control,rIgG
R18308 T25567 T25566 arg1Of data,The
R18309 T25567 T25568 arg1Of data,are
R18310 T25567 T25569 arg2Of data,represented
R18311 T25569 T25568 arg2Of represented,are
R18312 T25569 T25571 arg1Of represented,to
R18313 T25571 T25570 arg1Of to,relative
R18314 T25573 T25571 arg2Of signal,to
R18315 T25573 T25572 arg1Of signal,rIgG
R18316 T25573 T25574 arg1Of signal,using
R18317 T25577 T25574 arg2Of method,using
R18318 T25577 T25575 arg1Of method,the
R18319 T25577 T25576 arg1Of method,2-ΔΔCt

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T14848 559-566 Antecedent denotes C/EBP-β
T14847 637-640 Anaphor denotes its
R10902 T14847 T14848 boundBy its,C/EBP-β

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T25351 1829-1837 Protein denotes SerpinB2
T25350 1764-1772 Protein denotes SerpinB2
T25349 1726-1733 Protein denotes C/EBP-β
T25360 2808-2812 Protein denotes rIgG
T25359 2731-2747 Protein denotes p-C/EBP-β (T217)
T25358 2722-2729 Protein denotes C/EBP-β
T25357 2459-2467 Protein denotes SerpinB2
T25356 2342-2350 Protein denotes SerpinB2
T25355 2203-2219 Protein denotes p-C/EBP-β (T217)
T25354 2194-2201 Protein denotes C/EBP-β
T25353 2098-2114 Protein denotes p-C/EBP-β (T217)
T25352 2087-2094 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T25615 2459-2467 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T25614 2342-2350 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T25613 1829-1837 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T25612 1764-1772 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T25611 2733-2740 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25610 2722-2729 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25609 2205-2212 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25608 2194-2201 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25607 2100-2107 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25606 2087-2094 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25605 1726-1733 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T15192 1616-1624 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15191 1321-1329 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15190 1161-1169 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15189 977-985 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15188 600-608 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15187 465-473 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15186 162-170 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15185 25-33 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15184 1548-1555 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T15183 1471-1478 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T15182 1266-1273 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T15181 1031-1038 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T15180 834-841 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T15179 559-566 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T15178 128-135 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T15177 0-7 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-BP

Id Subject Object Predicate Lexical cue
T25366 2813-2819 http://purl.obolibrary.org/obo/GO_0023052 denotes signal
T25365 2221-2238 http://purl.obolibrary.org/obo/GO_0003899 denotes RNA Polymerase II
T25364 2221-2238 http://purl.obolibrary.org/obo/GO_0001055 denotes RNA Polymerase II
T25363 2221-2238 http://purl.obolibrary.org/obo/GO_1990114 denotes RNA Polymerase II
T25362 2493-2506 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T25361 1791-1804 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T14854 1593-1606 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T14853 842-857 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T14852 410-423 http://purl.obolibrary.org/obo/GO_0006277 denotes DNA amplified
T14851 1637-1652 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS
T14850 727-742 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS
T14849 183-198 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS

GO-MF

Id Subject Object Predicate Lexical cue
T25371 2221-2238 http://purl.obolibrary.org/obo/GO_0003899 denotes RNA Polymerase II
T25370 2221-2238 http://purl.obolibrary.org/obo/GO_0001055 denotes RNA Polymerase II
T25369 2703-2713 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T25368 2175-2185 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T25367 2068-2078 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T14859 375-391 http://purl.obolibrary.org/obo/GO_0005515 denotes binding proteins
T14858 1279-1286 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T14857 375-382 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T14856 371-382 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T14855 352-362 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T25382 2221-2238 http://purl.obolibrary.org/obo/GO_0005665 denotes RNA Polymerase II
T25381 2703-2713 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T25380 2175-2185 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T25379 2068-2078 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T25378 2703-2713 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T25377 2175-2185 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T25376 2068-2078 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T25375 2669-2678 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T25374 2124-2133 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T25373 2022-2031 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T25372 1882-1891 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T14867 1079-1099 http://purl.obolibrary.org/obo/GO_0009986 denotes associated with cell
T14866 352-362 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T14865 352-362 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T14864 1095-1099 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T14863 789-794 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14862 258-263 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14861 314-323 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T14860 210-219 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T25328 2771-2844 Sentence denotes The data are represented relative to rIgG signal using the 2-ΔΔCt method.
T25327 2534-2770 Sentence denotes Minimal background was detected using the rabbit IgG control, indicative of the specificity of the ChIP reaction. (B) qPCR analysis of chromatin immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), and the rIgG control.
T25326 2430-2533 Sentence denotes Recruitment of RNAPII to the SerpinB2 promoter suggests active transcription following LPS stimulation.
T25325 2116-2429 Sentence denotes Soluble chromatin (600–700 ng) was immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), RNA Polymerase II (RNAPII), or a rabbit IgG (rIgG) control. (A) Typical PCR pattern obtained in ChIP assays using murine SerpinB2 proximal promoter-specific primers, 338/−315 and −5/+19, as diagrammed in top.
T25324 1926-2115 Sentence denotes RAW264.7 macrophages were treated in the presence or absence of LPS for the indicated times and chromatin immunoprecipitation performed using antibodies against C/EBP-β or p-C/EBP-β (T217).
T25323 1791-1925 Sentence denotes Transcription factor occupancy on the SerpinB2 proximal promoter in vivo was determined by chromatin immunoprecipitation (ChIP) assay.
T25322 1698-1790 Sentence denotes Differential recruitment of C/EBP-β and C/EBP-βT217 to the murine SerpinB2 promoter in vivo.
T14846 1423-1653 Sentence denotes These data show an inverse relationship between C/EBP-β and p-C/EBP-βT217 recruitment, and indicate that T217-phosphorylated C/EBP-β may not be responsible for increased transcription from the SerpinB2 promoter in response to LPS.
T14845 1245-1422 Sentence denotes In contrast to total C/EBP-β, the binding affinity of p-C/EBP-βT217 for the SerpinB2 proximal promoter diminished with LPS stimulation at later timepoints (4 and 8 hrs)(Fig. 7).
T14844 817-1244 Sentence denotes Since changes in C/EBP-β phosphorylation states can affect C/EBP-β’s ability to transactivate target genes [38]; [63]; [64], we investigated recruitment to the SerpinB2 proximal promoter of the T217 phosphorylated C/EBP-β isoform (p-C/EBP-βT217), which has been associated with cell survival [65]. p-C/EBP-βT217 was constitutively bound to the SerpinB2 proximal promoter and also present after 1 hr of LPS stimulation (Fig. 7).
T14843 535-816 Sentence denotes The results showed that C/EBP-β is constitutively present at the SerpinB2 promoter as demonstrated by its association with the promoter in unstimulated macrophages and increased temporally in response to LPS reaching as much as 10-fold over unstimulated cells after 8 hrs (Fig. 7).
T14842 530-534 Sentence denotes 4A).
T14841 248-529 Sentence denotes RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig.
T14840 87-247 Sentence denotes We investigated the temporal dynamics of C/EBP-β recruitment to the murine SerpinB2 promoter in response to LPS in vivo by chromatin immunoprecipitation (ChIP).
T14839 0-86 Sentence denotes C/EBP-β Binds the Murine SerpinB2 Proximal Promoter in vivo in an LPS-inducible Manner
T205 0-86 Sentence denotes C/EBP-β Binds the Murine SerpinB2 Proximal Promoter in vivo in an LPS-inducible Manner
T206 87-247 Sentence denotes We investigated the temporal dynamics of C/EBP-β recruitment to the murine SerpinB2 promoter in response to LPS in vivo by chromatin immunoprecipitation (ChIP).
T207 248-534 Sentence denotes RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A).
T208 535-816 Sentence denotes The results showed that C/EBP-β is constitutively present at the SerpinB2 promoter as demonstrated by its association with the promoter in unstimulated macrophages and increased temporally in response to LPS reaching as much as 10-fold over unstimulated cells after 8 hrs (Fig. 7).
T209 817-1244 Sentence denotes Since changes in C/EBP-β phosphorylation states can affect C/EBP-β’s ability to transactivate target genes [38]; [63]; [64], we investigated recruitment to the SerpinB2 proximal promoter of the T217 phosphorylated C/EBP-β isoform (p-C/EBP-βT217), which has been associated with cell survival [65]. p-C/EBP-βT217 was constitutively bound to the SerpinB2 proximal promoter and also present after 1 hr of LPS stimulation (Fig. 7).
T210 1245-1422 Sentence denotes In contrast to total C/EBP-β, the binding affinity of p-C/EBP-βT217 for the SerpinB2 proximal promoter diminished with LPS stimulation at later timepoints (4 and 8 hrs)(Fig. 7).
T211 1423-1653 Sentence denotes These data show an inverse relationship between C/EBP-β and p-C/EBP-βT217 recruitment, and indicate that T217-phosphorylated C/EBP-β may not be responsible for increased transcription from the SerpinB2 promoter in response to LPS.
T212 1654-1790 Sentence denotes 10.1371/journal.pone.0057855.g007 Figure 7 Differential recruitment of C/EBP-β and C/EBP-βT217 to the murine SerpinB2 promoter in vivo.
T213 1791-1925 Sentence denotes Transcription factor occupancy on the SerpinB2 proximal promoter in vivo was determined by chromatin immunoprecipitation (ChIP) assay.
T214 1926-2115 Sentence denotes RAW264.7 macrophages were treated in the presence or absence of LPS for the indicated times and chromatin immunoprecipitation performed using antibodies against C/EBP-β or p-C/EBP-β (T217).
T215 2116-2429 Sentence denotes Soluble chromatin (600–700 ng) was immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), RNA Polymerase II (RNAPII), or a rabbit IgG (rIgG) control. (A) Typical PCR pattern obtained in ChIP assays using murine SerpinB2 proximal promoter-specific primers, 338/−315 and −5/+19, as diagrammed in top.
T216 2430-2533 Sentence denotes Recruitment of RNAPII to the SerpinB2 promoter suggests active transcription following LPS stimulation.
T217 2534-2770 Sentence denotes Minimal background was detected using the rabbit IgG control, indicative of the specificity of the ChIP reaction. (B) qPCR analysis of chromatin immunoprecipitated with antibodies against C/EBP-β, p-C/EBP-β (T217), and the rIgG control.
T218 2771-2844 Sentence denotes The data are represented relative to rIgG signal using the 2-ΔΔCt method.

simple1

Id Subject Object Predicate Lexical cue
T25394 2808-2812 Protein denotes rIgG
T25393 2731-2747 Protein denotes p-C/EBP-β (T217)
T25392 2722-2729 Protein denotes C/EBP-β
T25391 2459-2467 Protein denotes SerpinB2
T25390 2342-2350 Protein denotes SerpinB2
T25389 2203-2219 Protein denotes p-C/EBP-β (T217)
T25388 2194-2201 Protein denotes C/EBP-β
T25387 2098-2114 Protein denotes p-C/EBP-β (T217)
T25386 2087-2094 Protein denotes C/EBP-β
T25385 1829-1837 Protein denotes SerpinB2
T25384 1764-1772 Protein denotes SerpinB2
T25383 1726-1733 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T25604 2430-2441 Binding denotes Recruitment
T25603 1812-1821 Binding denotes occupancy
T25602 1711-1722 Binding denotes recruitment
T25601 2808-2812 Protein denotes rIgG
T25600 2731-2747 Protein denotes p-C/EBP-β (T217)
T25599 2722-2729 Protein denotes C/EBP-β
T25598 2459-2467 Protein denotes SerpinB2
T25597 2342-2350 Protein denotes SerpinB2
T25596 2203-2219 Protein denotes p-C/EBP-β (T217)
T25595 2194-2201 Protein denotes C/EBP-β
T25594 2098-2114 Protein denotes p-C/EBP-β (T217)
T25593 2087-2094 Protein denotes C/EBP-β
T25592 1829-1837 Protein denotes SerpinB2
T25591 1764-1772 Protein denotes SerpinB2
T25590 1726-1733 Protein denotes C/EBP-β
T15149 876-883 Protein denotes C/EBP-β
T15148 834-841 Protein denotes C/EBP-β
T15147 1048-1061 Protein denotes p-C/EBP-βT217
T15146 1031-1038 Protein denotes C/EBP-β
T15145 977-985 Protein denotes SerpinB2
T15144 600-608 Protein denotes SerpinB2
T15143 559-566 Protein denotes C/EBP-β
T15142 465-473 Protein denotes SerpinB2
T15141 162-170 Protein denotes SerpinB2
T15140 128-135 Protein denotes C/EBP-β
T15138 0-7 Protein denotes C/EBP-β
T15176 1497-1508 Binding denotes recruitment
T15175 1567-1578 Regulation denotes responsible
T15174 1528-1547 Phosphorylation denotes T217-phosphorylated
T15173 1593-1606 Transcription denotes transcription
T15172 1583-1592 Positive_regulation denotes increased
T15171 1287-1295 Binding denotes affinity
T15170 1279-1286 Binding denotes binding
T15169 1348-1358 Negative_regulation denotes diminished
T15168 1148-1153 Binding denotes bound
T15167 842-857 Phosphorylation denotes phosphorylation
T15166 869-875 Regulation denotes affect
T15165 823-830 Regulation denotes changes
T15164 958-969 Binding denotes recruitment
T15163 1016-1030 Phosphorylation denotes phosphorylated
T15162 585-592 Gene_expression denotes present
T15161 641-652 Binding denotes association
T15160 136-147 Binding denotes recruitment
T15159 8-13 Binding denotes Binds
T15158 1616-1624 Protein denotes SerpinB2
T15157 1548-1555 Protein denotes C/EBP-β
T15156 1483-1496 Protein denotes p-C/EBP-βT217
T15155 1471-1478 Protein denotes C/EBP-β
T15154 1321-1329 Protein denotes SerpinB2
T15153 1299-1312 Protein denotes p-C/EBP-βT217
T15152 1266-1273 Protein denotes C/EBP-β
T15151 1161-1169 Protein denotes SerpinB2
T15150 1115-1128 Protein denotes p-C/EBP-βT217
T15139 25-33 Protein denotes SerpinB2
R11177 T15138 T15159 themeOf C/EBP-β,Binds
R11178 T15139 T15159 themeOf SerpinB2,Binds
R11179 T15140 T15160 themeOf C/EBP-β,recruitment
R11180 T15143 T15161 themeOf C/EBP-β,association
R11181 T15143 T15162 themeOf C/EBP-β,present
R11182 T15144 T15161 themeOf SerpinB2,association
R18320 T25590 T25602 themeOf C/EBP-β,recruitment
R18321 T25591 T25602 themeOf SerpinB2,recruitment
R18322 T25592 T25603 themeOf SerpinB2,occupancy
R18323 T25598 T25604 themeOf SerpinB2,Recruitment
R11183 T15144 T15162 themeOf SerpinB2,present
R11184 T15145 T15164 themeOf SerpinB2,recruitment
R11185 T15145 T15164 themeOf SerpinB2,recruitment
R11186 T15146 T15164 themeOf C/EBP-β,recruitment
R11187 T15146 T15163 themeOf C/EBP-β,phosphorylated
R11188 T15147 T15164 themeOf p-C/EBP-βT217,recruitment
R11189 T15147 T15163 themeOf p-C/EBP-βT217,phosphorylated
R11190 T15148 T15165 themeOf C/EBP-β,changes
R11191 T15148 T15167 themeOf C/EBP-β,phosphorylation
R11192 T15149 T15166 themeOf C/EBP-β,affect
R11193 T15150 T15168 themeOf p-C/EBP-βT217,bound
R11194 T15151 T15168 themeOf SerpinB2,bound
R11195 T15152 T15169 themeOf C/EBP-β,diminished
R11196 T15153 T15171 themeOf p-C/EBP-βT217,affinity
R11197 T15153 T15170 themeOf p-C/EBP-βT217,binding
R11198 T15154 T15171 themeOf SerpinB2,affinity
R11199 T15154 T15169 themeOf SerpinB2,diminished
R11200 T15154 T15170 themeOf SerpinB2,binding
R11201 T15155 T15176 themeOf C/EBP-β,recruitment
R11202 T15156 T15176 themeOf p-C/EBP-βT217,recruitment
R11203 T15157 T15174 themeOf C/EBP-β,T217-phosphorylated
R11204 T15157 T15175 themeOf C/EBP-β,responsible
R11205 T15158 T15172 themeOf SerpinB2,increased
R11206 T15158 T15173 themeOf SerpinB2,transcription
R11207 T15173 T15172 themeOf transcription,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15268 1497-1508 Binding denotes recruitment
T15267 1528-1547 Phosphorylation denotes T217-phosphorylated
T15266 1567-1578 Regulation denotes responsible
T15265 1348-1358 Negative_regulation denotes diminished
T15264 1279-1286 Binding denotes binding
T15263 1148-1153 Binding denotes bound
T15262 842-857 Phosphorylation denotes phosphorylation
T15261 958-969 Binding denotes recruitment
T15260 869-875 Regulation denotes affect
T15259 1016-1030 Phosphorylation denotes phosphorylated
T15258 641-652 Binding denotes association
T15257 136-147 Binding denotes recruitment
T15256 116-124 Regulation denotes dynamics
T15255 8-13 Binding denotes Binds
T15254 1616-1624 Protein denotes SerpinB2
T15253 1548-1555 Protein denotes C/EBP-β
T15252 1483-1496 Protein denotes p-C/EBP-βT217
T15251 1471-1478 Protein denotes C/EBP-β
T15250 1321-1329 Protein denotes SerpinB2
T15249 1299-1312 Protein denotes p-C/EBP-βT217
T15248 1266-1273 Protein denotes C/EBP-β
T15247 1161-1169 Protein denotes SerpinB2
T15246 1115-1128 Protein denotes p-C/EBP-βT217
T15245 876-883 Protein denotes C/EBP-β
T15244 834-841 Protein denotes C/EBP-β
T15243 1048-1061 Protein denotes p-C/EBP-βT217
T15242 1031-1038 Protein denotes C/EBP-β
T15241 977-985 Protein denotes SerpinB2
T15240 600-608 Protein denotes SerpinB2
T15239 559-566 Protein denotes C/EBP-β
T15238 465-473 Protein denotes SerpinB2
T15237 162-170 Protein denotes SerpinB2
T15236 128-135 Protein denotes C/EBP-β
T15235 25-33 Protein denotes SerpinB2
T15234 0-7 Protein denotes C/EBP-β
T25659 2430-2441 Binding denotes Recruitment
T25658 1812-1821 Binding denotes occupancy
T25657 1711-1722 Binding denotes recruitment
T25656 2808-2812 Protein denotes rIgG
T25655 2731-2747 Protein denotes p-C/EBP-β (T217)
T25654 2722-2729 Protein denotes C/EBP-β
T25653 2459-2467 Protein denotes SerpinB2
T25652 2342-2350 Protein denotes SerpinB2
T25651 2203-2219 Protein denotes p-C/EBP-β (T217)
T25650 2194-2201 Protein denotes C/EBP-β
T25649 2098-2114 Protein denotes p-C/EBP-β (T217)
T25648 2087-2094 Protein denotes C/EBP-β
T25647 1829-1837 Protein denotes SerpinB2
T25646 1764-1772 Protein denotes SerpinB2
T25645 1726-1733 Protein denotes C/EBP-β
R11239 T15234 T15255 themeOf C/EBP-β,Binds
R11240 T15236 T15257 themeOf C/EBP-β,recruitment
R11241 T15239 T15258 themeOf C/EBP-β,association
R11242 T15240 T15258 themeOf SerpinB2,association
R11243 T15241 T15261 themeOf SerpinB2,recruitment
R11244 T15241 T15261 themeOf SerpinB2,recruitment
R11245 T15242 T15261 themeOf C/EBP-β,recruitment
R11246 T15242 T15259 themeOf C/EBP-β,phosphorylated
R11247 T15243 T15261 themeOf p-C/EBP-βT217,recruitment
R11248 T15244 T15262 themeOf C/EBP-β,phosphorylation
R11249 T15245 T15260 themeOf C/EBP-β,affect
R11250 T15246 T15263 themeOf p-C/EBP-βT217,bound
R11251 T15247 T15263 themeOf SerpinB2,bound
R11252 T15248 T15265 themeOf C/EBP-β,diminished
R11253 T15249 T15264 themeOf p-C/EBP-βT217,binding
R11254 T15250 T15264 themeOf SerpinB2,binding
R11255 T15251 T15268 themeOf C/EBP-β,recruitment
R11256 T15252 T15268 themeOf p-C/EBP-βT217,recruitment
R11257 T15253 T15267 themeOf C/EBP-β,T217-phosphorylated
R11258 T15253 T15266 themeOf C/EBP-β,responsible
R11259 T15257 T15256 themeOf recruitment,dynamics
R18330 T25645 T25657 themeOf C/EBP-β,recruitment
R18331 T25646 T25657 themeOf SerpinB2,recruitment
R18332 T25647 T25658 themeOf SerpinB2,occupancy
R18333 T25653 T25659 themeOf SerpinB2,Recruitment

DLUT931

Id Subject Object Predicate Lexical cue
T25629 2430-2441 Binding denotes Recruitment
T25628 1711-1722 Binding denotes recruitment
T25627 2808-2812 Protein denotes rIgG
T25626 2731-2747 Protein denotes p-C/EBP-β (T217)
T25625 2722-2729 Protein denotes C/EBP-β
T25624 2459-2467 Protein denotes SerpinB2
T25623 2342-2350 Protein denotes SerpinB2
T25622 2203-2219 Protein denotes p-C/EBP-β (T217)
T25621 2194-2201 Protein denotes C/EBP-β
T25620 2098-2114 Protein denotes p-C/EBP-β (T217)
T25619 2087-2094 Protein denotes C/EBP-β
T25618 1829-1837 Protein denotes SerpinB2
T25617 1764-1772 Protein denotes SerpinB2
T25616 1726-1733 Protein denotes C/EBP-β
T25630 2507-2516 Positive_regulation denotes following
T15233 1583-1592 Positive_regulation denotes increased
T15232 1567-1578 Positive_regulation denotes responsible
T15231 1593-1606 Transcription denotes transcription
T15230 1528-1547 Phosphorylation denotes T217-phosphorylated
T15229 1497-1508 Binding denotes recruitment
T15228 1348-1358 Negative_regulation denotes diminished
T15227 1279-1286 Binding denotes binding
T15226 1148-1153 Binding denotes bound
T15225 869-875 Regulation denotes affect
T15224 823-830 Regulation denotes changes
T15223 1016-1030 Phosphorylation denotes phosphorylated
T15222 958-969 Binding denotes recruitment
T15221 842-857 Phosphorylation denotes phosphorylation
T15220 641-652 Binding denotes association
T15219 136-147 Binding denotes recruitment
T15218 8-13 Binding denotes Binds
T15217 1616-1624 Protein denotes SerpinB2
T15216 1548-1555 Protein denotes C/EBP-β
T15215 1483-1496 Protein denotes p-C/EBP-βT217
T15214 1471-1478 Protein denotes C/EBP-β
T15213 1321-1329 Protein denotes SerpinB2
T15212 1299-1312 Protein denotes p-C/EBP-βT217
T15211 1266-1273 Protein denotes C/EBP-β
T15210 1161-1169 Protein denotes SerpinB2
T15209 1115-1128 Protein denotes p-C/EBP-βT217
T15208 876-883 Protein denotes C/EBP-β
T15207 834-841 Protein denotes C/EBP-β
T15206 1048-1061 Protein denotes p-C/EBP-βT217
T15205 1031-1038 Protein denotes C/EBP-β
T15204 977-985 Protein denotes SerpinB2
T15203 600-608 Protein denotes SerpinB2
T15202 559-566 Protein denotes C/EBP-β
T15201 465-473 Protein denotes SerpinB2
T15200 162-170 Protein denotes SerpinB2
T15199 128-135 Protein denotes C/EBP-β
T15198 25-33 Protein denotes SerpinB2
T15197 0-7 Protein denotes C/EBP-β
R11210 T15197 T15218 themeOf C/EBP-β,Binds
R11211 T15198 T15218 themeOf SerpinB2,Binds
R11212 T15199 T15219 themeOf C/EBP-β,recruitment
R11213 T15200 T15219 themeOf SerpinB2,recruitment
R11214 T15202 T15220 themeOf C/EBP-β,association
R11215 T15203 T15220 themeOf SerpinB2,association
R11216 T15204 T15222 themeOf SerpinB2,recruitment
R11217 T15204 T15222 themeOf SerpinB2,recruitment
R11218 T15205 T15222 themeOf C/EBP-β,recruitment
R11219 T15205 T15223 themeOf C/EBP-β,phosphorylated
R11220 T15206 T15222 themeOf p-C/EBP-βT217,recruitment
R11221 T15206 T15223 themeOf p-C/EBP-βT217,phosphorylated
R11222 T15207 T15221 themeOf C/EBP-β,phosphorylation
R11223 T15208 T15225 themeOf C/EBP-β,affect
R11224 T15209 T15226 themeOf p-C/EBP-βT217,bound
R11225 T15210 T15226 themeOf SerpinB2,bound
R11226 T15211 T15228 themeOf C/EBP-β,diminished
R11227 T15212 T15227 themeOf p-C/EBP-βT217,binding
R11228 T15213 T15227 themeOf SerpinB2,binding
R11229 T15214 T15229 themeOf C/EBP-β,recruitment
R11230 T15215 T15229 themeOf p-C/EBP-βT217,recruitment
R11231 T15216 T15230 themeOf C/EBP-β,T217-phosphorylated
R11232 T15216 T15232 causeOf C/EBP-β,responsible
R11233 T15217 T15231 themeOf SerpinB2,transcription
R11234 T15221 T15224 themeOf phosphorylation,changes
R11235 T15224 T15225 causeOf changes,affect
R11236 T15227 T15228 themeOf binding,diminished
R11237 T15231 T15232 themeOf transcription,responsible
R11238 T15231 T15233 themeOf transcription,increased
R18324 T25616 T25628 themeOf C/EBP-β,recruitment
R18325 T25617 T25628 themeOf SerpinB2,recruitment
R18326 T25624 T25629 themeOf SerpinB2,Recruitment
R18327 T25629 T25630 themeOf Recruitment,following

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25741 2455-2532 Transcription denotes the SerpinB2 promoter suggests active transcription following LPS stimulation
T25740 2753-2769 Regulation denotes the rIgG control
T25739 2360-2377 Entity denotes promoter-specific
T25738 2022-2031 Entity denotes chromatin
T25737 2517-2520 Entity denotes LPS
T25736 2666-2713 Entity denotes of chromatin immunoprecipitated with antibodies
T25735 2068-2078 Entity denotes antibodies
T25734 2468-2476 Entity denotes promoter
T25733 1764-1772 Protein denotes SerpinB2
T25732 2261-2263 Protein denotes Ig
T25731 2808-2812 Protein denotes rIgG
T25730 2455-2485 Protein denotes the SerpinB2 promoter suggests
T25729 2194-2238 Protein denotes C/EBP-β, p-C/EBP-β (T217), RNA Polymerase II
T25728 2757-2761 Protein denotes rIgG
T25727 2703-2713 Entity denotes antibodies
T25726 2170-2185 Entity denotes with antibodies
T25725 2293-2296 Protein denotes PCR
T25724 1726-1733 Protein denotes C/EBP-β
T25723 1987-1993 Entity denotes of LPS
T25722 2653-2656 Protein denotes PCR
T25721 2087-2094 Protein denotes C/EBP-β
T25720 1753-1789 Entity denotes the murine SerpinB2 promoter in vivo
T25719 2109-2113 Entity denotes T217
T25718 2194-2220 Protein denotes C/EBP-β, p-C/EBP-β (T217),
T25717 1882-1891 Entity denotes chromatin
T25716 2342-2350 Protein denotes SerpinB2
T25715 2742-2746 Entity denotes T217
T25714 1847-1863 Entity denotes promoter in vivo
T25713 2203-2219 Protein denotes p-C/EBP-β (T217)
T25712 2722-2729 Protein denotes C/EBP-β
T25711 2098-2107 Protein denotes p-C/EBP-β
T25710 2266-2270 Protein denotes rIgG
T25709 1825-1846 Protein denotes the SerpinB2 proximal
T25708 2317-2328 Entity denotes ChIP assays
T25707 2214-2218 Entity denotes T217
T25706 2731-2747 Protein denotes p-C/EBP-β (T217)
T25705 1926-1946 Entity denotes RAW264.7 macrophages
T25704 2116-2133 Entity denotes Soluble chromatin
T15328 1528-1555 Phosphorylation denotes T217-phosphorylated C/EBP-β
T15327 125-147 Binding denotes of C/EBP-β recruitment
T15326 0-42 Binding denotes C/EBP-β Binds the Murine SerpinB2 Proximal
T15325 1115-1187 Binding denotes p-C/EBP-βT217 was constitutively bound to the SerpinB2 proximal promoter
T15324 1275-1338 Binding denotes the binding affinity of p-C/EBP-βT217 for the SerpinB2 proximal
T15323 1275-1338 Binding denotes the binding affinity of p-C/EBP-βT217 for the SerpinB2 proximal
T15322 1483-1508 Binding denotes p-C/EBP-βT217 recruitment
T15321 834-857 Phosphorylation denotes C/EBP-β phosphorylation
T15320 897-928 Positive_regulation denotes transactivate target genes [38]
T15319 653-670 Entity denotes with the promoter
T15318 559-566 Protein denotes C/EBP-β
T15317 600-608 Protein denotes SerpinB2
T15316 977-985 Protein denotes SerpinB2
T15315 1528-1547 Entity denotes T217-phosphorylated
T15314 1407-1412 Protein denotes 8 hrs
T15313 1313-1338 Protein denotes for the SerpinB2 proximal
T15312 210-219 Entity denotes chromatin
T15311 162-170 Protein denotes SerpinB2
T15310 596-617 Entity denotes the SerpinB2 promoter
T15309 1031-1038 Protein denotes C/EBP-β
T15308 1471-1478 Protein denotes C/EBP-β
T15307 1161-1169 Protein denotes SerpinB2
T15306 1364-1367 Entity denotes LPS
T15305 151-179 Entity denotes the murine SerpinB2 promoter
T15304 43-86 Entity denotes Promoter in vivo in an LPS-inducible Manner
T15303 1296-1312 Protein denotes of p-C/EBP-βT217
T15302 973-1062 Entity denotes the SerpinB2 proximal promoter of the T217 phosphorylated C/EBP-β isoform (p-C/EBP-βT217)
T15301 1154-1187 Entity denotes to the SerpinB2 proximal promoter
T15300 1007-1062 Entity denotes the T217 phosphorylated C/EBP-β isoform (p-C/EBP-βT217)
T15299 911-928 Protein denotes target genes [38]
T15298 834-841 Protein denotes C/EBP-β
T15297 1616-1624 Protein denotes SerpinB2
T15296 1236-1239 Protein denotes Fig
T15295 306-323 Entity denotes soluble chromatin
T15294 14-42 Protein denotes the Murine SerpinB2 Proximal
T15293 1612-1633 Entity denotes the SerpinB2 promoter
T15292 801-806 Protein denotes 8 hrs
T15291 1339-1413 Entity denotes promoter diminished with LPS stimulation at later timepoints (4 and 8 hrs)
T15290 1090-1113 Entity denotes with cell survival [65]
T15289 347-362 Entity denotes with antibodies
T15288 1048-1061 Protein denotes p-C/EBP-βT217
T15287 1266-1274 Protein denotes C/EBP-β,
T15286 474-500 Entity denotes proximal promoter specific
T15285 1414-1417 Protein denotes Fig
T15284 1219-1222 Entity denotes LPS
T15283 0-7 Protein denotes C/EBP-β
T15282 285-288 Entity denotes LPS
T15281 397-413 Entity denotes the enriched DNA
T15280 739-742 Entity denotes LPS
T15279 808-811 Protein denotes Fig
T15278 687-698 Entity denotes macrophages
T15277 1483-1496 Protein denotes p-C/EBP-βT217
T15276 1115-1128 Protein denotes p-C/EBP-βT217
T15275 195-246 Entity denotes LPS in vivo by chromatin immunoprecipitation (ChIP)
T15274 465-473 Protein denotes SerpinB2
T15273 293-304 Protein denotes up to 8 hrs
T15272 454-458 Protein denotes qPCR
T15271 1528-1555 Protein denotes T217-phosphorylated C/EBP-β
T15270 128-135 Protein denotes C/EBP-β
T15269 371-392 Protein denotes DNA binding proteins,
R11260 T15270 T15327 themeOf C/EBP-β,of C/EBP-β recruitment
R11261 T15271 T15328 themeOf T217-phosphorylated C/EBP-β,T217-phosphorylated C/EBP-β
R11262 T15276 T15325 themeOf p-C/EBP-βT217,p-C/EBP-βT217 was constitutively bound to the SerpinB2 proximal promoter
R11263 T15277 T15322 themeOf p-C/EBP-βT217,p-C/EBP-βT217 recruitment
R11264 T15283 T15326 themeOf C/EBP-β,C/EBP-β Binds the Murine SerpinB2 Proximal
R11265 T15293 T15297 partOf the SerpinB2 promoter,SerpinB2
R11266 T15298 T15321 themeOf C/EBP-β,C/EBP-β phosphorylation
R11267 T15299 T15320 themeOf target genes [38],transactivate target genes [38]
R11268 T15301 T15307 partOf to the SerpinB2 proximal promoter,SerpinB2
R11269 T15301 T15325 themeOf to the SerpinB2 proximal promoter,p-C/EBP-βT217 was constitutively bound to the SerpinB2 proximal promoter
R11270 T15302 T15316 partOf the SerpinB2 proximal promoter of the T217 phosphorylated C/EBP-β isoform (p-C/EBP-βT217),SerpinB2
R11271 T15303 T15323 themeOf of p-C/EBP-βT217,the binding affinity of p-C/EBP-βT217 for the SerpinB2 proximal
R11272 T15305 T15311 partOf the murine SerpinB2 promoter,SerpinB2
R11273 T15310 T15317 partOf the SerpinB2 promoter,SerpinB2
R11274 T15313 T15323 themeOf for the SerpinB2 proximal,the binding affinity of p-C/EBP-βT217 for the SerpinB2 proximal
R11275 T15315 T15271 partOf T217-phosphorylated,T217-phosphorylated C/EBP-β
R11276 T15315 T15328 siteOf T217-phosphorylated,T217-phosphorylated C/EBP-β
R18338 T25720 T25733 partOf the murine SerpinB2 promoter in vivo,SerpinB2
R18339 T25728 T25740 themeOf rIgG,the rIgG control
R18340 T25730 T25741 themeOf the SerpinB2 promoter suggests,the SerpinB2 promoter suggests active transcription following LPS stimulation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T25681 2808-2812 Protein denotes rIgG
T25680 2757-2769 Protein denotes rIgG control
T25679 2742-2746 Protein denotes T217
T25678 2722-2740 Protein denotes C/EBP-β, p-C/EBP-β
T25677 2633-2637 Protein denotes ChIP
T25676 2583-2586 Protein denotes IgG
T25675 2430-2441 Binding denotes Recruitment
T25674 2459-2476 Protein denotes SerpinB2 promoter
T25673 2445-2451 Protein denotes RNAPII
T25672 2266-2270 Protein denotes rIgG
T25671 2254-2264 Protein denotes rabbit IgG
T25670 2240-2246 Protein denotes RNAPII
T25669 2221-2238 Protein denotes RNA Polymerase II
T25668 2214-2218 Protein denotes T217
T25667 2194-2212 Protein denotes C/EBP-β, p-C/EBP-β
T25666 2109-2113 Protein denotes T217
T25665 2098-2107 Protein denotes p-C/EBP-β
T25664 2087-2094 Protein denotes C/EBP-β
T25663 1829-1855 Protein denotes SerpinB2 proximal promoter
T25662 1757-1781 Protein denotes murine SerpinB2 promoter
T25661 1738-1749 Protein denotes C/EBP-βT217
T25660 1726-1733 Protein denotes C/EBP-β
R18334 T25673 T25675 themeOf RNAPII,Recruitment
R18335 T25674 T25675 themeOf SerpinB2 promoter,Recruitment

testone

Id Subject Object Predicate Lexical cue
T25293 2493-2506 Transcription denotes transcription
T25292 2468-2476 Entity denotes promoter
T25291 2430-2441 Binding denotes Recruitment
T25290 1847-1855 Entity denotes promoter
T25289 1773-1781 Entity denotes promoter
T25288 1711-1722 Binding denotes recruitment
T25287 2808-2812 Protein denotes rIgG
T25286 2731-2747 Protein denotes p-C/EBP-β (T217)
T25285 2722-2729 Protein denotes C/EBP-β
T25284 2459-2467 Protein denotes SerpinB2
T25283 2342-2350 Protein denotes SerpinB2
T25282 2203-2219 Protein denotes p-C/EBP-β (T217)
T25281 2194-2201 Protein denotes C/EBP-β
T25280 2098-2114 Protein denotes p-C/EBP-β (T217)
T25279 2087-2094 Protein denotes C/EBP-β
T25278 1829-1837 Protein denotes SerpinB2
T25277 1764-1772 Protein denotes SerpinB2
T25276 1726-1733 Protein denotes C/EBP-β
T14821 1593-1606 Transcription denotes transcription
T14820 1583-1592 Positive_regulation denotes increased
T14819 1533-1547 Phosphorylation denotes phosphorylated
T14818 1497-1508 Binding denotes recruitment
T14817 1339-1347 Entity denotes promoter
T14816 1279-1286 Binding denotes binding
T14815 1179-1187 Entity denotes promoter
T14814 1170-1178 Entity denotes proximal
T14813 1161-1169 Entity denotes SerpinB2
T14812 1148-1153 Binding denotes bound
T14811 1016-1030 Phosphorylation denotes phosphorylated
T14810 995-1003 Entity denotes promoter
T14809 986-994 Entity denotes proximal
T14808 977-985 Entity denotes SerpinB2
T14807 958-969 Binding denotes recruitment
T14806 842-857 Phosphorylation denotes phosphorylation
T14805 823-830 Regulation denotes changes
T14804 727-738 Positive_regulation denotes response to
T14803 641-652 Binding denotes association
T14802 171-179 Entity denotes promoter
T14801 136-147 Binding denotes recruitment
T14800 43-51 Entity denotes Promoter
T14799 8-13 Binding denotes Binds
R10891 T14800 T14799 themeOf Promoter,Binds
R10892 T14806 T14805 themeOf phosphorylation,changes
R10893 T14810 T14807 themeOf promoter,recruitment
R10894 T14815 T14812 themeOf promoter,bound
R10895 T14817 T14816 themeOf promoter,binding
R10896 T14821 T14820 themeOf transcription,increased
R18118 T25276 T25288 themeOf C/EBP-β,recruitment
R18119 T25284 T25293 themeOf SerpinB2,transcription
R18120 T25289 T25288 themeOf promoter,recruitment
R18121 T25289 T25277 partOf promoter,SerpinB2
R18122 T25290 T25278 partOf promoter,SerpinB2
R18123 T25292 T25291 themeOf promoter,Recruitment
R18124 T25292 T25284 partOf promoter,SerpinB2

test3

Id Subject Object Predicate Lexical cue
T25321 2808-2812 Protein denotes rIgG
T25320 2731-2748 Protein denotes p-C/EBP-β (T217),
T25319 2722-2729 Protein denotes C/EBP-β
T25318 2493-2506 Transcription denotes transcription
T25317 2468-2476 Entity denotes promoter
T25316 2459-2467 Protein denotes SerpinB2
T25315 2430-2441 Binding denotes Recruitment
T25314 2342-2350 Protein denotes SerpinB2
T25313 2203-2220 Protein denotes p-C/EBP-β (T217),
T25312 2194-2201 Protein denotes C/EBP-β
T25311 2087-2094 Protein denotes C/EBP-β
T25310 1829-1837 Protein denotes SerpinB2
T25309 1812-1821 Binding denotes occupancy
T25308 1764-1772 Protein denotes SerpinB2
T25307 1726-1733 Protein denotes C/EBP-β
T25306 1711-1722 Binding denotes recruitment
T25305 2808-2812 Protein denotes rIgG
T25304 2731-2747 Protein denotes p-C/EBP-β (T217)
T25303 2722-2729 Protein denotes C/EBP-β
T25302 2459-2467 Protein denotes SerpinB2
T25301 2342-2350 Protein denotes SerpinB2
T25300 2203-2219 Protein denotes p-C/EBP-β (T217)
T25299 2194-2201 Protein denotes C/EBP-β
T25298 2098-2114 Protein denotes p-C/EBP-β (T217)
T25297 2087-2094 Protein denotes C/EBP-β
T25296 1829-1837 Protein denotes SerpinB2
T25295 1764-1772 Protein denotes SerpinB2
T25294 1726-1733 Protein denotes C/EBP-β
T14838 1593-1606 Transcription denotes transcription
T14837 1583-1592 Positive_regulation denotes increased
T14836 1567-1578 Positive_regulation denotes responsible
T14835 1533-1547 Phosphorylation denotes phosphorylated
T14834 1497-1508 Binding denotes recruitment
T14833 1279-1286 Binding denotes binding
T14832 1148-1153 Binding denotes bound
T14831 1016-1030 Phosphorylation denotes phosphorylated
T14830 995-1003 Entity denotes promoter
T14829 958-969 Binding denotes recruitment
T14828 869-875 Regulation denotes affect
T14827 842-857 Phosphorylation denotes phosphorylation
T14826 823-830 Regulation denotes changes
T14825 641-652 Binding denotes association
T14824 609-617 Entity denotes promoter
T14823 136-147 Binding denotes recruitment
T14822 8-13 Binding denotes Binds
R10897 T14827 T14826 themeOf phosphorylation,changes
R10898 T14827 T14828 causeOf phosphorylation,affect
R10899 T14830 T14829 themeOf promoter,recruitment
R10900 T14837 T14836 themeOf increased,responsible
R10901 T14838 T14837 themeOf transcription,increased
R18125 T25307 T25306 themeOf C/EBP-β,recruitment
R18126 T25317 T25315 themeOf promoter,Recruitment
R18127 T25317 T25316 partOf promoter,SerpinB2