> top > docs > PMC:3589482 > spans > 32011-33224 > annotations

PMC:3589482 / 32011-33224 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25250 1212-1213 . denotes .
T25249 1211-1212 -RRB- denotes )
T25248 1206-1211 NNP denotes ANOVA
T25247 1198-1205 JJ denotes two-way
T25246 1196-1197 , denotes ,
T25245 1192-1196 CD denotes 0.05
T25244 1191-1192 RB denotes <
T25243 1190-1191 VB denotes p
T25242 1188-1189 , denotes ,
T25241 1187-1188 SYM denotes *
T25240 1186-1187 -LRB- denotes (
T25239 1184-1185 . denotes .
T25238 1174-1184 VBP denotes triplicate
T25237 1171-1173 CC denotes or
T25236 1161-1170 VBP denotes duplicate
T25235 1158-1160 IN denotes in
T25234 1148-1157 VBN denotes performed
T25233 1136-1147 NNS denotes experiments
T25232 1124-1135 JJ denotes independent
T25231 1120-1123 CD denotes two
T25230 1117-1119 IN denotes of
T25229 1113-1116 NNP denotes SEM
T25228 1109-1112 CC denotes and
T25227 1104-1108 NN denotes mean
T25226 1100-1103 DT denotes the
T25225 1090-1099 VBP denotes represent
T25224 1082-1089 NNS denotes results
T25223 1078-1081 DT denotes The
T25222 1076-1077 . denotes .
T25221 1065-1076 NNS denotes macrophages
T25220 1054-1064 JJ denotes peritoneal
T25219 1043-1053 JJ denotes transduced
T25218 1032-1042 JJ denotes lentiviral
T25217 1028-1031 DT denotes the
T25216 1025-1027 IN denotes in
T25215 1014-1024 NN denotes expression
T25214 1009-1013 NNP denotes mRNA
T25213 1000-1008 NNP denotes SerpinB2
T25212 993-999 JJ denotes murine
T25211 990-992 IN denotes of
T25210 981-989 NN denotes analysis
T25209 976-980 JJ denotes qPCR
T25208 974-975 : denotes :
T25207 969-974 RB denotes Right
T25206 967-968 . denotes .
T25205 962-967 NNP denotes shRNA
T25204 956-961 NNP denotes CEBPB
T25203 950-955 JJ denotes human
T25202 946-949 RB denotes not
T25201 942-945 CC denotes and
T25200 936-941 NNP denotes shRNA
T25199 930-935 NNP denotes Cebpb
T25198 923-929 JJ denotes murine
T25197 918-922 IN denotes with
T25196 908-917 NN denotes infection
T25195 898-907 VBG denotes following
T25194 896-897 NN denotes β
T25193 895-896 : denotes -
T25192 890-895 NNP denotes C/EBP
T25191 879-889 JJ denotes endogenous
T25190 876-878 IN denotes of
T25189 866-875 NN denotes knockdown
T25188 856-865 JJ denotes effective
T25187 850-855 VBZ denotes shows
T25186 841-849 NN denotes analysis
T25185 836-840 NN denotes blot
T25184 828-835 JJ denotes Western
T25183 826-827 : denotes :
T25182 822-826 VBN denotes Left
T25174 799-800 -LRB- denotes (
T25173 795-798 NNP denotes LPS
T25172 790-794 IN denotes with
T25171 779-789 VBN denotes stimulated
T25170 774-778 VBD denotes were
T25169 762-773 NNS denotes macrophages
T25168 751-761 VBD denotes transduced
T25167 740-750 NNP denotes Lentiviral
T25166 738-739 . denotes .
T25165 737-738 NNP denotes ]
T25164 735-737 CD denotes 38
T25163 734-735 NNP denotes [
T25162 725-733 NN denotes sequence
T25161 719-724 NNP denotes Cebpb
T25160 712-718 NN denotes murine
T25159 708-711 DT denotes the
T25158 701-707 VB denotes target
T25157 697-700 RB denotes not
T25156 692-696 VBZ denotes does
T25155 689-691 PRP denotes it
T25154 683-688 IN denotes since
T25153 675-682 NN denotes control
T25152 661-674 JJ denotes non-silencing
T25151 657-660 DT denotes the
T25150 654-656 IN denotes as
T25149 647-653 VBZ denotes serves
T25148 641-646 NNP denotes shRNA
T25147 635-640 NNP denotes CEBPB
T25146 629-634 NNP denotes Human
T25145 627-628 . denotes .
T25144 621-627 NNS denotes shRNAs
T25143 610-620 JJ denotes lentiviral
T25142 601-609 JJ denotes specific
T25141 594-600 JJ denotes murine
T25140 590-593 CC denotes and
T25139 584-589 JJ denotes human
T25138 579-583 IN denotes with
T25137 570-578 VBN denotes infected
T25136 565-569 VBD denotes were
T25135 563-564 -RRB- denotes )
T25134 559-563 NNS denotes macs
T25133 556-558 NNP denotes TG
T25132 555-556 -LRB- denotes (
T25131 543-554 NNS denotes macrophages
T25130 532-542 JJ denotes peritoneal
T25129 508-531 JJ denotes Thioglycollate-elicited
T25128 506-507 . denotes .
T25127 495-506 NNS denotes macrophages
T25126 482-494 JJ denotes inflammatory
T25125 470-481 JJ denotes β-deficient
T25124 469-470 : denotes -
T25123 464-469 NNP denotes C/EBP
T25122 461-463 IN denotes in
T25121 451-460 VBN denotes abrogated
T25120 448-450 VBZ denotes is
T25119 437-447 NN denotes expression
T25118 428-436 NNP denotes SerpinB2
T25117 417-427 NNP denotes Endogenous
T25116 415-416 -RRB- denotes )
T25115 414-415 NNP denotes B
T25114 413-414 -LRB- denotes (
T25113 411-412 . denotes .
T25112 406-411 NNS denotes times
T25111 396-405 JJ denotes indicated
T25110 392-395 DT denotes the
T25109 388-391 IN denotes for
T25108 386-387 -RRB- denotes )
T25107 381-386 NN denotes ng/ml
T25106 377-380 CD denotes 100
T25105 376-377 -LRB- denotes (
T25104 372-375 NNP denotes LPS
T25103 367-371 IN denotes with
T25102 356-366 NN denotes simulation
T25101 350-355 IN denotes after
T25100 346-349 CC denotes and
T25099 344-345 , denotes ,
T25098 340-344 NNS denotes MEFs
T25097 338-339 CD denotes
T25096 337-338 CD denotes /
T25095 336-337 VBP denotes
T25094 331-336 NNP denotes Cebpb
T25093 327-330 CC denotes and
T25092 325-326 NN denotes +
T25091 324-325 NN denotes /
T25090 323-324 NN denotes +
T25089 318-323 NNP denotes Cebpb
T25088 308-317 JJ denotes untreated
T25087 305-307 IN denotes in
T25086 294-304 NN denotes expression
T25085 289-293 NNP denotes mRNA
T25084 280-288 NNP denotes SerpinB2
T25083 273-279 JJ denotes murine
T25082 270-272 IN denotes of
T25081 261-269 NN denotes analysis
T25080 256-260 NNP denotes qPCR
T25079 254-255 . denotes .
T25078 251-254 NNP denotes LPS
T25077 248-250 IN denotes of
T25076 239-247 NN denotes presence
T25075 235-238 CC denotes and
T25074 227-234 NN denotes absence
T25073 223-226 DT denotes the
T25072 220-222 IN denotes in
T25071 215-219 NNS denotes MEFs
T25070 213-214 CD denotes +
T25069 212-213 VBD denotes /
T25068 211-212 NNP denotes +
T25067 206-211 NNP denotes Cebpb
T25066 203-205 TO denotes to
T25065 194-202 VBN denotes compared
T25064 189-193 NNS denotes MEFs
T25063 187-188 CD denotes
T25062 186-187 VBD denotes /
T25061 185-186 NNP denotes
T25060 180-185 NNP denotes Cebpb
T25059 177-179 IN denotes in
T25058 167-176 VBN denotes abrogated
T25057 164-166 VBZ denotes is
T25056 153-163 NN denotes expression
T25055 148-152 NNP denotes mRNA
T25054 139-147 NNP denotes SerpinB2
T25053 128-138 NNP denotes Endogenous
T25052 126-127 -RRB- denotes )
T25051 125-126 NNP denotes A
T25050 124-125 -LRB- denotes (
T25049 122-123 . denotes .
T25048 112-122 NN denotes expression
T25047 107-111 NNP denotes mRNA
T25046 98-106 NNP denotes SerpinB2
T25045 86-97 JJ denotes LPS-induced
T25044 82-85 CC denotes and
T25043 69-81 JJ denotes constitutive
T25042 65-68 IN denotes for
T25041 55-64 JJ denotes essential
T25040 52-54 VBZ denotes is
T25039 50-51 NN denotes β
T25038 49-50 : denotes -
T25037 44-49 SYM denotes C/EBP
T25181 820-821 . denotes .
T25180 817-820 NNS denotes hrs
T25179 815-816 CD denotes 4
T25178 811-814 IN denotes for
T25177 809-810 -RRB- denotes )
T25176 804-809 NN denotes ng/ml
T25175 800-803 CD denotes 100
R17904 T25037 T25040 dep C/EBP,is
R17905 T25038 T25040 punct -,is
R17906 T25039 T25040 nsubj β,is
R17907 T25040 T25040 ROOT is,is
R17908 T25041 T25040 acomp essential,is
R17909 T25042 T25041 prep for,essential
R17910 T25043 T25048 amod constitutive,expression
R17911 T25044 T25043 cc and,constitutive
R17912 T25045 T25043 conj LPS-induced,constitutive
R17913 T25046 T25047 compound SerpinB2,mRNA
R17914 T25047 T25048 compound mRNA,expression
R17915 T25048 T25042 pobj expression,for
R17916 T25049 T25040 punct .,is
R17917 T25050 T25050 ROOT (,(
R17918 T25051 T25050 dep A,(
R17919 T25052 T25051 punct ),A
R17920 T25053 T25055 compound Endogenous,mRNA
R17921 T25054 T25055 compound SerpinB2,mRNA
R17922 T25055 T25056 compound mRNA,expression
R17923 T25056 T25058 nsubjpass expression,abrogated
R17924 T25057 T25058 auxpass is,abrogated
R17925 T25058 T25058 ROOT abrogated,abrogated
R17926 T25059 T25058 prep in,abrogated
R17927 T25060 T25061 compound Cebpb,−
R17928 T25061 T25059 pobj −,in
R17929 T25062 T25058 conj /,abrogated
R17930 T25063 T25064 nummod −,MEFs
R17931 T25064 T25062 dobj MEFs,/
R17932 T25065 T25062 prep compared,/
R17933 T25066 T25065 prep to,compared
R17934 T25067 T25068 compound Cebpb,+
R17935 T25068 T25069 compound +,/
R17936 T25069 T25066 pobj /,to
R17937 T25070 T25071 nummod +,MEFs
R17938 T25071 T25069 dobj MEFs,/
R17939 T25072 T25069 prep in,/
R17940 T25073 T25074 det the,absence
R17941 T25074 T25072 pobj absence,in
R17942 T25075 T25074 cc and,absence
R17943 T25076 T25074 conj presence,absence
R17944 T25077 T25074 prep of,absence
R17945 T25078 T25077 pobj LPS,of
R17946 T25079 T25058 punct .,abrogated
R17947 T25080 T25081 compound qPCR,analysis
R17948 T25081 T25095 nsubj analysis,−
R17949 T25082 T25081 prep of,analysis
R17950 T25083 T25086 amod murine,expression
R17951 T25084 T25085 compound SerpinB2,mRNA
R17952 T25085 T25086 compound mRNA,expression
R17953 T25086 T25082 pobj expression,of
R17954 T25087 T25086 prep in,expression
R17955 T25088 T25092 amod untreated,+
R17956 T25089 T25092 compound Cebpb,+
R17957 T25090 T25091 compound +,/
R17958 T25091 T25092 compound /,+
R17959 T25092 T25087 pobj +,in
R17960 T25093 T25092 cc and,+
R17961 T25094 T25095 compound Cebpb,−
R17962 T25095 T25095 ROOT −,−
R17963 T25096 T25098 nummod /,MEFs
R17964 T25097 T25098 nummod −,MEFs
R17965 T25098 T25095 dobj MEFs,−
R17966 T25099 T25095 punct ",",−
R17967 T25100 T25095 cc and,−
R17968 T25101 T25095 conj after,−
R17969 T25102 T25101 pobj simulation,after
R17970 T25103 T25102 prep with,simulation
R17971 T25104 T25103 pobj LPS,with
R17972 T25105 T25107 punct (,ng/ml
R17973 T25106 T25107 nummod 100,ng/ml
R17974 T25107 T25104 appos ng/ml,LPS
R17975 T25108 T25095 punct ),−
R17976 T25109 T25095 prep for,−
R17977 T25110 T25112 det the,times
R17978 T25111 T25112 amod indicated,times
R17979 T25112 T25109 pobj times,for
R17980 T25113 T25095 punct .,−
R17981 T25114 T25119 punct (,expression
R17982 T25115 T25119 nmod B,expression
R17983 T25116 T25119 punct ),expression
R17984 T25117 T25119 compound Endogenous,expression
R17985 T25118 T25119 compound SerpinB2,expression
R17986 T25119 T25121 nsubjpass expression,abrogated
R17987 T25120 T25121 auxpass is,abrogated
R17988 T25121 T25121 ROOT abrogated,abrogated
R17989 T25122 T25121 prep in,abrogated
R17990 T25123 T25122 pobj C/EBP,in
R17991 T25124 T25125 punct -,β-deficient
R17992 T25125 T25127 amod β-deficient,macrophages
R17993 T25126 T25127 amod inflammatory,macrophages
R17994 T25127 T25121 conj macrophages,abrogated
R17995 T25128 T25121 punct .,abrogated
R17996 T25129 T25131 amod Thioglycollate-elicited,macrophages
R17997 T25130 T25131 amod peritoneal,macrophages
R17998 T25131 T25137 nsubjpass macrophages,infected
R17999 T25132 T25131 punct (,macrophages
R18000 T25133 T25134 compound TG,macs
R18001 T25134 T25131 appos macs,macrophages
R18002 T25135 T25131 punct ),macrophages
R18003 T25136 T25137 auxpass were,infected
R18004 T25137 T25137 ROOT infected,infected
R18005 T25138 T25137 prep with,infected
R18006 T25139 T25144 amod human,shRNAs
R18007 T25140 T25139 cc and,human
R18008 T25141 T25139 conj murine,human
R18009 T25142 T25144 amod specific,shRNAs
R18010 T25143 T25144 amod lentiviral,shRNAs
R18011 T25144 T25138 pobj shRNAs,with
R18012 T25145 T25137 punct .,infected
R18013 T25146 T25148 compound Human,shRNA
R18014 T25147 T25148 compound CEBPB,shRNA
R18015 T25148 T25149 nsubj shRNA,serves
R18016 T25149 T25149 ROOT serves,serves
R18017 T25150 T25149 prep as,serves
R18018 T25151 T25153 det the,control
R18019 T25152 T25153 amod non-silencing,control
R18020 T25153 T25150 pobj control,as
R18021 T25154 T25158 mark since,target
R18022 T25155 T25158 nsubj it,target
R18023 T25156 T25158 aux does,target
R18024 T25157 T25158 neg not,target
R18025 T25158 T25149 advcl target,serves
R18026 T25159 T25162 det the,sequence
R18027 T25160 T25162 compound murine,sequence
R18028 T25161 T25162 compound Cebpb,sequence
R18029 T25162 T25158 dobj sequence,target
R18030 T25163 T25165 nmod [,]
R18031 T25164 T25165 nummod 38,]
R18032 T25165 T25158 npadvmod ],target
R18033 T25166 T25149 punct .,serves
R18034 T25167 T25168 nsubj Lentiviral,transduced
R18035 T25168 T25168 ROOT transduced,transduced
R18036 T25169 T25171 nsubjpass macrophages,stimulated
R18037 T25170 T25171 auxpass were,stimulated
R18038 T25171 T25168 ccomp stimulated,transduced
R18039 T25172 T25171 prep with,stimulated
R18040 T25173 T25172 pobj LPS,with
R18041 T25174 T25173 punct (,LPS
R18042 T25175 T25176 nummod 100,ng/ml
R18043 T25176 T25173 appos ng/ml,LPS
R18044 T25177 T25173 punct ),LPS
R18045 T25178 T25171 prep for,stimulated
R18046 T25179 T25180 nummod 4,hrs
R18047 T25180 T25178 pobj hrs,for
R18048 T25181 T25171 punct .,stimulated
R18049 T25182 T25187 advcl Left,shows
R18050 T25183 T25187 punct :,shows
R18051 T25184 T25186 amod Western,analysis
R18052 T25185 T25186 compound blot,analysis
R18053 T25186 T25187 nsubj analysis,shows
R18054 T25187 T25187 ROOT shows,shows
R18055 T25188 T25189 amod effective,knockdown
R18056 T25189 T25187 dobj knockdown,shows
R18057 T25190 T25189 prep of,knockdown
R18058 T25191 T25194 amod endogenous,β
R18059 T25192 T25194 compound C/EBP,β
R18060 T25193 T25194 punct -,β
R18061 T25194 T25190 pobj β,of
R18062 T25195 T25189 prep following,knockdown
R18063 T25196 T25195 pobj infection,following
R18064 T25197 T25196 prep with,infection
R18065 T25198 T25200 compound murine,shRNA
R18066 T25199 T25200 compound Cebpb,shRNA
R18067 T25200 T25197 pobj shRNA,with
R18068 T25201 T25200 cc and,shRNA
R18069 T25202 T25203 neg not,human
R18070 T25203 T25205 amod human,shRNA
R18071 T25204 T25205 compound CEBPB,shRNA
R18072 T25205 T25200 conj shRNA,shRNA
R18073 T25206 T25187 punct .,shows
R18074 T25207 T25210 amod Right,analysis
R18075 T25208 T25207 punct :,Right
R18076 T25209 T25210 amod qPCR,analysis
R18077 T25210 T25210 ROOT analysis,analysis
R18078 T25211 T25210 prep of,analysis
R18079 T25212 T25215 amod murine,expression
R18080 T25213 T25214 compound SerpinB2,mRNA
R18081 T25214 T25215 compound mRNA,expression
R18082 T25215 T25211 pobj expression,of
R18083 T25216 T25210 prep in,analysis
R18084 T25217 T25221 det the,macrophages
R18085 T25218 T25221 amod lentiviral,macrophages
R18086 T25219 T25221 amod transduced,macrophages
R18087 T25220 T25221 amod peritoneal,macrophages
R18088 T25221 T25216 pobj macrophages,in
R18089 T25222 T25210 punct .,analysis
R18090 T25223 T25224 det The,results
R18091 T25224 T25225 nsubj results,represent
R18092 T25225 T25225 ROOT represent,represent
R18093 T25226 T25227 det the,mean
R18094 T25227 T25225 dobj mean,represent
R18095 T25228 T25227 cc and,mean
R18096 T25229 T25227 conj SEM,mean
R18097 T25230 T25229 prep of,SEM
R18098 T25231 T25233 nummod two,experiments
R18099 T25232 T25233 amod independent,experiments
R18100 T25233 T25230 pobj experiments,of
R18101 T25234 T25233 acl performed,experiments
R18102 T25235 T25234 prep in,performed
R18103 T25236 T25235 pobj duplicate,in
R18104 T25237 T25236 cc or,duplicate
R18105 T25238 T25236 conj triplicate,duplicate
R18106 T25239 T25225 punct .,represent
R18107 T25240 T25243 punct (,p
R18108 T25241 T25243 punct *,p
R18109 T25242 T25243 punct ",",p
R18110 T25243 T25243 ROOT p,p
R18111 T25244 T25245 compound <,0.05
R18112 T25245 T25243 dobj 0.05,p
R18113 T25246 T25248 punct ",",ANOVA
R18114 T25247 T25248 amod two-way,ANOVA
R18115 T25248 T25243 npadvmod ANOVA,p
R18116 T25249 T25243 punct ),p
R18117 T25250 T25243 punct .,p

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T24814 1211-1212 -RRB- denotes )
T24813 1206-1211 NN denotes ANOVA
T24812 1198-1205 JJ denotes two-way
T24811 1196-1197 -COMMA- denotes ,
T24810 1192-1196 CD denotes 0.05
T24809 1191-1192 SYM denotes <
T24808 1190-1191 NN denotes p
T24807 1188-1189 -COMMA- denotes ,
T24806 1187-1188 SYM denotes *
T24805 1186-1187 -LRB- denotes (
T24804 1174-1185 FW denotes triplicate.
T24803 1171-1173 CC denotes or
T24802 1161-1170 NN denotes duplicate
T24801 1158-1160 IN denotes in
T24800 1148-1157 VB denotes performed
T24799 1136-1147 NN denotes experiments
T24798 1124-1135 JJ denotes independent
T24797 1120-1123 CD denotes two
T24796 1117-1119 IN denotes of
T24795 1113-1116 NN denotes SEM
T24794 1109-1112 CC denotes and
T24793 1104-1108 NN denotes mean
T24792 1100-1103 DT denotes the
T24791 1090-1099 VB denotes represent
T24790 1082-1089 NN denotes results
T24789 1078-1081 DT denotes The
T24788 1065-1076 NN denotes macrophages
T24787 1054-1064 JJ denotes peritoneal
T24786 1043-1053 VB denotes transduced
T24785 1032-1042 JJ denotes lentiviral
T24784 1028-1031 DT denotes the
T24783 1025-1027 IN denotes in
T24782 1014-1024 NN denotes expression
T24781 1009-1013 NN denotes mRNA
T24780 1000-1008 NN denotes SerpinB2
T24779 993-999 JJ denotes murine
T24778 990-992 IN denotes of
T24777 981-989 NN denotes analysis
T24776 976-980 NN denotes qPCR
T24775 974-975 -COLON- denotes :
T24774 969-974 RB denotes Right
T24773 962-967 NN denotes shRNA
T24772 956-961 NN denotes CEBPB
T24771 950-955 JJ denotes human
T24770 946-949 RB denotes not
T24769 942-945 CC denotes and
T24673 327-330 CC denotes and
T24672 318-326 NN denotes Cebpb+/+
T24671 308-317 JJ denotes untreated
T24670 305-307 IN denotes in
T24669 294-304 NN denotes expression
T24668 289-293 NN denotes mRNA
T24667 280-288 NN denotes SerpinB2
T24666 273-279 JJ denotes murine
T24665 270-272 IN denotes of
T24664 261-269 NN denotes analysis
T24663 256-260 NN denotes qPCR
T24662 251-255 NN denotes LPS.
T24661 248-250 IN denotes of
T24660 239-247 NN denotes presence
T24659 235-238 CC denotes and
T24658 227-234 NN denotes absence
T24657 223-226 DT denotes the
T24656 220-222 IN denotes in
T24655 215-219 NN denotes MEFs
T24654 206-214 JJ denotes Cebpb+/+
T24653 203-205 TO denotes to
T24652 194-202 VB denotes compared
T24651 189-193 NN denotes MEFs
T24650 180-188 NN denotes Cebpb−/−
T24649 177-179 IN denotes in
T24648 167-176 VB denotes abrogated
T24647 164-166 VB denotes is
T24646 153-163 NN denotes expression
T24645 148-152 NN denotes mRNA
T24644 139-147 NN denotes SerpinB2
T24643 128-138 JJ denotes Endogenous
T24642 126-127 -RRB- denotes )
T24641 125-126 NN denotes A
T24640 124-125 -LRB- denotes (
T24639 112-122 NN denotes expression
T24638 107-111 NN denotes mRNA
T24637 98-106 NN denotes SerpinB2
T24636 86-97 JJ denotes LPS-induced
T24635 82-85 CC denotes and
T24634 69-81 JJ denotes constitutive
T24633 65-68 IN denotes for
T24632 55-64 JJ denotes essential
T24631 52-54 VB denotes is
T24630 44-51 NN denotes C/EBP-β
T24768 936-941 NN denotes shRNA
T24767 930-935 NN denotes Cebpb
T24766 923-929 JJ denotes murine
T24765 918-922 IN denotes with
T24764 908-917 NN denotes infection
T24763 898-907 VB denotes following
T24762 890-897 NN denotes C/EBP-β
T24761 879-889 JJ denotes endogenous
T24760 876-878 IN denotes of
T24759 866-875 NN denotes knockdown
T24758 856-865 JJ denotes effective
T24757 850-855 VB denotes shows
T24756 841-849 NN denotes analysis
T24755 836-840 NN denotes blot
T24754 828-835 NN denotes Western
T24753 826-827 -COLON- denotes :
T24752 822-826 NNP denotes Left
T24751 817-820 NN denotes hrs
T24750 815-816 CD denotes 4
T24749 811-814 IN denotes for
T24748 809-810 -RRB- denotes )
T24747 804-809 NN denotes ng/ml
T24746 800-803 CD denotes 100
T24745 799-800 -LRB- denotes (
T24744 795-798 NN denotes LPS
T24743 790-794 IN denotes with
T24742 779-789 VB denotes stimulated
T24741 774-778 VB denotes were
T24740 762-773 NN denotes macrophages
T24739 751-761 VB denotes transduced
T24738 740-750 JJ denotes Lentiviral
T24737 737-738 -RRB- denotes ]
T24736 735-737 CD denotes 38
T24735 734-735 -LRB- denotes [
T24734 725-733 NN denotes sequence
T24733 719-724 NN denotes Cebpb
T24732 712-718 JJ denotes murine
T24731 708-711 DT denotes the
T24730 701-707 VB denotes target
T24729 697-700 RB denotes not
T24728 692-696 VB denotes does
T24727 689-691 PRP denotes it
T24726 683-688 IN denotes since
T24725 675-682 NN denotes control
T24724 661-674 JJ denotes non-silencing
T24723 657-660 DT denotes the
T24722 654-656 IN denotes as
T24721 647-653 VB denotes serves
T24720 641-646 NN denotes shRNA
T24719 635-640 NN denotes CEBPB
T24718 629-634 JJ denotes Human
T24717 621-627 NN denotes shRNAs
T24716 610-620 JJ denotes lentiviral
T24715 601-609 JJ denotes specific
T24714 594-600 JJ denotes murine
T24713 590-593 CC denotes and
T24712 584-589 JJ denotes human
T24711 579-583 IN denotes with
T24710 570-578 VB denotes infected
T24709 565-569 VB denotes were
T24708 563-564 -RRB- denotes )
T24707 559-563 NN denotes macs
T24706 556-558 NN denotes TG
T24705 555-556 -LRB- denotes (
T24704 543-554 NN denotes macrophages
T24703 532-542 JJ denotes peritoneal
T24702 508-531 JJ denotes Thioglycollate-elicited
T24701 495-506 NN denotes macrophages
T24700 482-494 JJ denotes inflammatory
T24699 464-481 JJ denotes C/EBP-β-deficient
T24698 461-463 IN denotes in
T24697 451-460 VB denotes abrogated
T24696 448-450 VB denotes is
T24695 437-447 NN denotes expression
T24694 428-436 NN denotes SerpinB2
T24693 417-427 JJ denotes Endogenous
T24692 415-416 -RRB- denotes )
T24691 414-415 NN denotes B
T24690 413-414 -LRB- denotes (
T24689 406-412 NN denotes times.
T24688 396-405 VB denotes indicated
T24687 392-395 DT denotes the
T24686 388-391 IN denotes for
T24685 386-387 -RRB- denotes )
T24684 381-386 NN denotes ng/ml
T24683 377-380 CD denotes 100
T24682 376-377 -LRB- denotes (
T24681 372-375 NN denotes LPS
T24680 367-371 IN denotes with
T24679 356-366 NN denotes simulation
T24678 350-355 IN denotes after
T24677 346-349 CC denotes and
T24676 344-345 -COMMA- denotes ,
T24675 340-344 NN denotes MEFs
T24674 331-339 NNP denotes Cebpb−/−
R17623 T24630 T24631 arg1Of C/EBP-β,is
R17624 T24630 T24632 arg1Of C/EBP-β,essential
R17625 T24632 T24631 arg2Of essential,is
R17626 T24632 T24633 arg1Of essential,for
R17627 T24634 T24635 arg1Of constitutive,and
R17628 T24636 T24635 arg2Of LPS-induced,and
R17629 T24639 T24633 arg2Of expression,for
R17630 T24639 T24634 arg1Of expression,constitutive
R17631 T24639 T24636 arg1Of expression,LPS-induced
R17632 T24639 T24637 arg1Of expression,SerpinB2
R17633 T24639 T24638 arg1Of expression,mRNA
R17634 T24641 T24640 arg2Of A,(
R17635 T24642 T24640 arg3Of ),(
R17636 T24646 T24640 arg1Of expression,(
R17637 T24646 T24643 arg1Of expression,Endogenous
R17638 T24646 T24644 arg1Of expression,SerpinB2
R17639 T24646 T24645 arg1Of expression,mRNA
R17640 T24646 T24647 arg1Of expression,is
R17641 T24646 T24648 arg2Of expression,abrogated
R17642 T24648 T24647 arg2Of abrogated,is
R17643 T24648 T24649 arg1Of abrogated,in
R17644 T24648 T24652 arg1Of abrogated,compared
R17645 T24648 T24656 arg1Of abrogated,in
R17646 T24648 T24677 arg1Of abrogated,and
R17647 T24651 T24649 arg2Of MEFs,in
R17648 T24651 T24650 arg1Of MEFs,Cebpb−/−
R17649 T24653 T24652 arg2Of to,compared
R17650 T24655 T24653 arg2Of MEFs,to
R17651 T24655 T24654 arg1Of MEFs,Cebpb+/+
R17652 T24658 T24659 arg1Of absence,and
R17653 T24659 T24656 arg2Of and,in
R17654 T24659 T24657 arg1Of and,the
R17655 T24659 T24661 arg1Of and,of
R17656 T24660 T24659 arg2Of presence,and
R17657 T24664 T24661 arg2Of analysis,of
R17658 T24664 T24662 arg1Of analysis,LPS.
R17659 T24664 T24663 arg1Of analysis,qPCR
R17660 T24664 T24665 arg1Of analysis,of
R17661 T24669 T24665 arg2Of expression,of
R17662 T24669 T24666 arg1Of expression,murine
R17663 T24669 T24667 arg1Of expression,SerpinB2
R17664 T24669 T24668 arg1Of expression,mRNA
R17665 T24669 T24670 arg1Of expression,in
R17666 T24672 T24671 arg1Of Cebpb+/+,untreated
R17667 T24672 T24673 arg1Of Cebpb+/+,and
R17668 T24673 T24670 arg2Of and,in
R17669 T24675 T24673 arg2Of MEFs,and
R17670 T24675 T24674 arg1Of MEFs,Cebpb−/−
R17671 T24677 T24676 arg1Of and,","
R17672 T24679 T24678 arg2Of simulation,after
R17673 T24679 T24680 arg1Of simulation,with
R17674 T24679 T24686 arg1Of simulation,for
R17675 T24681 T24680 arg2Of LPS,with
R17676 T24681 T24682 arg1Of LPS,(
R17677 T24684 T24682 arg2Of ng/ml,(
R17678 T24684 T24683 arg1Of ng/ml,100
R17679 T24685 T24682 arg3Of ),(
R17680 T24689 T24686 arg2Of times.,for
R17681 T24689 T24687 arg1Of times.,the
R17682 T24689 T24688 arg2Of times.,indicated
R17683 T24691 T24690 arg2Of B,(
R17684 T24692 T24690 arg3Of ),(
R17685 T24695 T24690 arg1Of expression,(
R17686 T24695 T24693 arg1Of expression,Endogenous
R17687 T24695 T24694 arg1Of expression,SerpinB2
R17688 T24695 T24696 arg1Of expression,is
R17689 T24695 T24697 arg2Of expression,abrogated
R17690 T24697 T24677 arg2Of abrogated,and
R17691 T24697 T24678 arg1Of abrogated,after
R17692 T24697 T24696 arg2Of abrogated,is
R17693 T24697 T24698 arg1Of abrogated,in
R17694 T24701 T24698 arg2Of macrophages,in
R17695 T24701 T24699 arg1Of macrophages,C/EBP-β-deficient
R17696 T24701 T24700 arg1Of macrophages,inflammatory
R17697 T24704 T24702 arg1Of macrophages,Thioglycollate-elicited
R17698 T24704 T24703 arg1Of macrophages,peritoneal
R17699 T24704 T24705 arg1Of macrophages,(
R17700 T24704 T24709 arg1Of macrophages,were
R17701 T24704 T24710 arg2Of macrophages,infected
R17702 T24707 T24705 arg2Of macs,(
R17703 T24707 T24706 arg1Of macs,TG
R17704 T24708 T24705 arg3Of ),(
R17705 T24710 T24709 arg2Of infected,were
R17706 T24710 T24711 arg1Of infected,with
R17707 T24712 T24713 arg1Of human,and
R17708 T24715 T24713 arg2Of specific,and
R17709 T24715 T24714 arg1Of specific,murine
R17710 T24717 T24711 arg2Of shRNAs,with
R17711 T24717 T24712 arg1Of shRNAs,human
R17712 T24717 T24715 arg1Of shRNAs,specific
R17713 T24717 T24716 arg1Of shRNAs,lentiviral
R17714 T24720 T24718 arg1Of shRNA,Human
R17715 T24720 T24719 arg1Of shRNA,CEBPB
R17716 T24720 T24721 arg1Of shRNA,serves
R17717 T24721 T24722 arg1Of serves,as
R17718 T24721 T24726 arg1Of serves,since
R17719 T24725 T24722 arg2Of control,as
R17720 T24725 T24723 arg1Of control,the
R17721 T24725 T24724 arg1Of control,non-silencing
R17722 T24727 T24728 arg1Of it,does
R17723 T24727 T24730 arg1Of it,target
R17724 T24730 T24726 arg2Of target,since
R17725 T24730 T24728 arg2Of target,does
R17726 T24730 T24729 arg1Of target,not
R17727 T24730 T24735 arg1Of target,[
R17728 T24734 T24730 arg2Of sequence,target
R17729 T24734 T24731 arg1Of sequence,the
R17730 T24734 T24732 arg1Of sequence,murine
R17731 T24734 T24733 arg1Of sequence,Cebpb
R17732 T24736 T24735 arg2Of 38,[
R17733 T24737 T24735 arg3Of ],[
R17734 T24740 T24738 arg1Of macrophages,Lentiviral
R17735 T24740 T24739 arg2Of macrophages,transduced
R17736 T24740 T24741 arg1Of macrophages,were
R17737 T24740 T24742 arg2Of macrophages,stimulated
R17738 T24742 T24741 arg2Of stimulated,were
R17739 T24742 T24743 arg1Of stimulated,with
R17740 T24742 T24749 arg1Of stimulated,for
R17741 T24744 T24743 arg2Of LPS,with
R17742 T24744 T24745 arg1Of LPS,(
R17743 T24747 T24745 arg2Of ng/ml,(
R17744 T24747 T24746 arg1Of ng/ml,100
R17745 T24748 T24745 arg3Of ),(
R17746 T24751 T24749 arg2Of hrs,for
R17747 T24751 T24750 arg1Of hrs,4
R17748 T24752 T24753 arg1Of Left,:
R17749 T24756 T24754 arg1Of analysis,Western
R17750 T24756 T24755 arg1Of analysis,blot
R17751 T24756 T24757 arg1Of analysis,shows
R17752 T24757 T24763 arg1Of shows,following
R17753 T24759 T24757 arg2Of knockdown,shows
R17754 T24759 T24758 arg1Of knockdown,effective
R17755 T24759 T24760 arg1Of knockdown,of
R17756 T24762 T24760 arg2Of C/EBP-β,of
R17757 T24762 T24761 arg1Of C/EBP-β,endogenous
R17758 T24764 T24763 arg2Of infection,following
R17759 T24764 T24765 arg1Of infection,with
R17760 T24768 T24766 arg1Of shRNA,murine
R17761 T24768 T24767 arg1Of shRNA,Cebpb
R17762 T24768 T24769 arg1Of shRNA,and
R17763 T24769 T24765 arg2Of and,with
R17764 T24769 T24770 arg1Of and,not
R17765 T24773 T24769 arg2Of shRNA,and
R17766 T24773 T24771 arg1Of shRNA,human
R17767 T24773 T24772 arg1Of shRNA,CEBPB
R17768 T24774 T24775 arg1Of Right,:
R17769 T24777 T24774 arg1Of analysis,Right
R17770 T24777 T24776 arg1Of analysis,qPCR
R17771 T24777 T24778 arg1Of analysis,of
R17772 T24782 T24778 arg2Of expression,of
R17773 T24782 T24779 arg1Of expression,murine
R17774 T24782 T24780 arg1Of expression,SerpinB2
R17775 T24782 T24781 arg1Of expression,mRNA
R17776 T24782 T24783 arg1Of expression,in
R17777 T24788 T24783 arg2Of macrophages,in
R17778 T24788 T24784 arg1Of macrophages,the
R17779 T24788 T24785 arg1Of macrophages,lentiviral
R17780 T24788 T24786 arg2Of macrophages,transduced
R17781 T24788 T24787 arg1Of macrophages,peritoneal
R17782 T24790 T24789 arg1Of results,The
R17783 T24790 T24791 arg1Of results,represent
R17784 T24793 T24794 arg1Of mean,and
R17785 T24794 T24791 arg2Of and,represent
R17786 T24794 T24792 arg1Of and,the
R17787 T24794 T24796 arg1Of and,of
R17788 T24795 T24794 arg2Of SEM,and
R17789 T24799 T24796 arg2Of experiments,of
R17790 T24799 T24797 arg1Of experiments,two
R17791 T24799 T24798 arg1Of experiments,independent
R17792 T24799 T24800 arg2Of experiments,performed
R17793 T24799 T24805 arg1Of experiments,(
R17794 T24800 T24801 arg1Of performed,in
R17795 T24802 T24803 arg1Of duplicate,or
R17796 T24803 T24801 arg2Of or,in
R17797 T24804 T24803 arg2Of triplicate.,or
R17798 T24806 T24807 arg1Of *,","
R17799 T24808 T24807 arg2Of p,","
R17800 T24810 T24809 arg1Of 0.05,<
R17801 T24810 T24811 arg1Of 0.05,","
R17802 T24812 T24811 arg2Of two-way,","
R17803 T24813 T24805 arg2Of ANOVA,(
R17804 T24813 T24806 arg1Of ANOVA,*
R17805 T24813 T24810 arg1Of ANOVA,0.05
R17806 T24813 T24812 arg1Of ANOVA,two-way
R17807 T24814 T24805 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T24616 1000-1008 Protein denotes SerpinB2
T24615 890-897 Protein denotes C/EBP-β
T24614 719-724 Protein denotes Cebpb
T24613 464-471 Protein denotes C/EBP-β
T24612 428-436 Protein denotes SerpinB2
T24611 331-336 Protein denotes Cebpb
T24610 318-323 Protein denotes Cebpb
T24609 280-288 Protein denotes SerpinB2
T24608 206-211 Protein denotes Cebpb
T24607 180-185 Protein denotes Cebpb
T24606 139-147 Protein denotes SerpinB2
T24605 98-106 Protein denotes SerpinB2
T24604 44-51 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T24865 1000-1008 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T24864 428-436 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T24863 280-288 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T24854 464-471 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T24853 44-51 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T24862 139-147 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T24861 98-106 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T24860 930-935 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T24859 719-724 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T24858 331-336 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T24857 318-323 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T24856 206-211 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T24855 180-185 http://www.uniprot.org/uniprot/P28033 denotes Cebpb

sentences

Id Subject Object Predicate Lexical cue
T24577 1078-1213 Sentence denotes The results represent the mean and SEM of two independent experiments performed in duplicate or triplicate. (*, p<0.05, two-way ANOVA).
T24576 969-1077 Sentence denotes Right: qPCR analysis of murine SerpinB2 mRNA expression in the lentiviral transduced peritoneal macrophages.
T24575 828-968 Sentence denotes Western blot analysis shows effective knockdown of endogenous C/EBP-β following infection with murine Cebpb shRNA and not human CEBPB shRNA.
T24574 822-827 Sentence denotes Left:
T24573 740-821 Sentence denotes Lentiviral transduced macrophages were stimulated with LPS (100 ng/ml) for 4 hrs.
T24572 629-739 Sentence denotes Human CEBPB shRNA serves as the non-silencing control since it does not target the murine Cebpb sequence [38].
T24571 508-628 Sentence denotes Thioglycollate-elicited peritoneal macrophages (TG macs) were infected with human and murine specific lentiviral shRNAs.
T24570 124-507 Sentence denotes (A) Endogenous SerpinB2 mRNA expression is abrogated in Cebpb−/− MEFs compared to Cebpb+/+ MEFs in the absence and presence of LPS. qPCR analysis of murine SerpinB2 mRNA expression in untreated Cebpb+/+ and Cebpb−/− MEFs, and after simulation with LPS (100 ng/ml) for the indicated times. (B) Endogenous SerpinB2 expression is abrogated in C/EBP-β-deficient inflammatory macrophages.
T24569 44-123 Sentence denotes C/EBP-β is essential for constitutive and LPS-induced SerpinB2 mRNA expression.
T196 0-123 Sentence denotes 10.1371/journal.pone.0057855.g006 Figure 6 C/EBP-β is essential for constitutive and LPS-induced SerpinB2 mRNA expression.
T197 124-507 Sentence denotes (A) Endogenous SerpinB2 mRNA expression is abrogated in Cebpb−/− MEFs compared to Cebpb+/+ MEFs in the absence and presence of LPS. qPCR analysis of murine SerpinB2 mRNA expression in untreated Cebpb+/+ and Cebpb−/− MEFs, and after simulation with LPS (100 ng/ml) for the indicated times. (B) Endogenous SerpinB2 expression is abrogated in C/EBP-β-deficient inflammatory macrophages.
T198 508-628 Sentence denotes Thioglycollate-elicited peritoneal macrophages (TG macs) were infected with human and murine specific lentiviral shRNAs.
T199 629-739 Sentence denotes Human CEBPB shRNA serves as the non-silencing control since it does not target the murine Cebpb sequence [38].
T200 740-821 Sentence denotes Lentiviral transduced macrophages were stimulated with LPS (100 ng/ml) for 4 hrs.
T201 822-827 Sentence denotes Left:
T202 828-968 Sentence denotes Western blot analysis shows effective knockdown of endogenous C/EBP-β following infection with murine Cebpb shRNA and not human CEBPB shRNA.
T203 969-1077 Sentence denotes Right: qPCR analysis of murine SerpinB2 mRNA expression in the lentiviral transduced peritoneal macrophages.
T204 1078-1213 Sentence denotes The results represent the mean and SEM of two independent experiments performed in duplicate or triplicate. (*, p<0.05, two-way ANOVA).

simple1

Id Subject Object Predicate Lexical cue
T24629 1000-1008 Protein denotes SerpinB2
T24628 890-897 Protein denotes C/EBP-β
T24627 719-724 Protein denotes Cebpb
T24626 464-471 Protein denotes C/EBP-β
T24625 428-436 Protein denotes SerpinB2
T24624 331-336 Protein denotes Cebpb
T24623 318-323 Protein denotes Cebpb
T24622 280-288 Protein denotes SerpinB2
T24621 206-211 Protein denotes Cebpb
T24620 180-185 Protein denotes Cebpb
T24619 139-147 Protein denotes SerpinB2
T24618 98-106 Protein denotes SerpinB2
T24617 44-51 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T24852 1014-1024 Transcription denotes expression
T24851 866-875 Negative_regulation denotes knockdown
T24850 701-707 Regulation denotes target
T24849 451-460 Negative_regulation denotes abrogated
T24848 472-481 Negative_regulation denotes deficient
T24847 437-447 Gene_expression denotes expression
T24846 153-163 Transcription denotes expression
T24845 294-304 Transcription denotes expression
T24844 167-176 Negative_regulation denotes abrogated
T24843 55-64 Positive_regulation denotes essential
T24842 86-97 Positive_regulation denotes LPS-induced
T24841 112-122 Transcription denotes expression
T24840 1000-1008 Protein denotes SerpinB2
T24839 890-897 Protein denotes C/EBP-β
T24838 719-724 Protein denotes Cebpb
T24837 428-436 Protein denotes SerpinB2
T24836 464-471 Protein denotes C/EBP-β
T24835 331-336 Protein denotes Cebpb
T24834 318-323 Protein denotes Cebpb
T24833 280-288 Protein denotes SerpinB2
T24832 206-211 Protein denotes Cebpb
T24831 180-185 Protein denotes Cebpb
T24830 139-147 Protein denotes SerpinB2
T24829 98-106 Protein denotes SerpinB2
T24828 44-51 Protein denotes C/EBP-β
R17808 T24828 T24843 causeOf C/EBP-β,essential
R17809 T24829 T24842 themeOf SerpinB2,LPS-induced
R17810 T24829 T24841 themeOf SerpinB2,expression
R17811 T24830 T24846 themeOf SerpinB2,expression
R17812 T24832 T24845 themeOf Cebpb,expression
R17813 T24833 T24845 themeOf SerpinB2,expression
R17814 T24834 T24845 themeOf Cebpb,expression
R17815 T24835 T24845 themeOf Cebpb,expression
R17816 T24836 T24848 themeOf C/EBP-β,deficient
R17817 T24837 T24847 themeOf SerpinB2,expression
R17818 T24838 T24850 themeOf Cebpb,target
R17819 T24839 T24851 themeOf C/EBP-β,knockdown
R17820 T24840 T24852 themeOf SerpinB2,expression
R17821 T24841 T24843 themeOf expression,essential
R17822 T24841 T24842 themeOf expression,LPS-induced
R17823 T24846 T24844 themeOf expression,abrogated
R17824 T24847 T24849 themeOf expression,abrogated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T24922 112-122 Transcription denotes expression
T24921 1000-1008 Protein denotes SerpinB2
T24920 890-897 Protein denotes C/EBP-β
T24919 719-724 Protein denotes Cebpb
T24918 428-436 Protein denotes SerpinB2
T24917 464-471 Protein denotes C/EBP-β
T24916 331-336 Protein denotes Cebpb
T24915 318-323 Protein denotes Cebpb
T24914 280-288 Protein denotes SerpinB2
T24913 206-211 Protein denotes Cebpb
T24912 180-185 Protein denotes Cebpb
T24911 139-147 Protein denotes SerpinB2
T24910 98-106 Protein denotes SerpinB2
T24909 44-51 Protein denotes C/EBP-β
T24933 1014-1024 Transcription denotes expression
T24932 866-875 Negative_regulation denotes knockdown
T24931 701-707 Binding denotes target
T24930 472-481 Negative_regulation denotes deficient
T24929 437-447 Gene_expression denotes expression
T24928 451-460 Negative_regulation denotes abrogated
T24927 153-163 Transcription denotes expression
T24926 294-304 Transcription denotes expression
T24925 167-176 Negative_regulation denotes abrogated
T24924 86-97 Positive_regulation denotes LPS-induced
T24923 55-64 Positive_regulation denotes essential
R17844 T24910 T24922 themeOf SerpinB2,expression
R17845 T24911 T24927 themeOf SerpinB2,expression
R17846 T24912 T24925 causeOf Cebpb,abrogated
R17847 T24912 T24925 causeOf Cebpb,abrogated
R17848 T24913 T24925 themeOf Cebpb,abrogated
R17849 T24914 T24926 themeOf SerpinB2,expression
R17850 T24915 T24926 themeOf Cebpb,expression
R17851 T24916 T24926 themeOf Cebpb,expression
R17852 T24917 T24930 themeOf C/EBP-β,deficient
R17853 T24918 T24929 themeOf SerpinB2,expression
R17854 T24919 T24931 themeOf Cebpb,target
R17855 T24920 T24932 themeOf C/EBP-β,knockdown
R17856 T24921 T24933 themeOf SerpinB2,expression
R17857 T24922 T24923 themeOf expression,essential
R17858 T24922 T24924 themeOf expression,LPS-induced
R17859 T24927 T24925 themeOf expression,abrogated
R17860 T24929 T24928 themeOf expression,abrogated
R17861 T24930 T24928 causeOf deficient,abrogated
R17843 T24909 T24923 causeOf C/EBP-β,essential

DLUT931

Id Subject Object Predicate Lexical cue
T24908 1014-1024 Transcription denotes expression
T24907 866-875 Negative_regulation denotes knockdown
T24906 701-707 Regulation denotes target
T24905 472-481 Negative_regulation denotes deficient
T24904 451-460 Negative_regulation denotes abrogated
T24903 437-447 Gene_expression denotes expression
T24902 294-304 Transcription denotes expression
T24901 167-176 Negative_regulation denotes abrogated
T24900 153-163 Transcription denotes expression
T24899 86-97 Positive_regulation denotes LPS-induced
T24898 55-64 Positive_regulation denotes essential
T24897 112-122 Transcription denotes expression
T24896 1000-1008 Protein denotes SerpinB2
T24895 890-897 Protein denotes C/EBP-β
T24894 719-724 Protein denotes Cebpb
T24893 428-436 Protein denotes SerpinB2
T24892 464-471 Protein denotes C/EBP-β
T24891 331-336 Protein denotes Cebpb
T24890 318-323 Protein denotes Cebpb
T24889 280-288 Protein denotes SerpinB2
T24888 206-211 Protein denotes Cebpb
T24887 180-185 Protein denotes Cebpb
T24886 139-147 Protein denotes SerpinB2
T24885 98-106 Protein denotes SerpinB2
T24884 44-51 Protein denotes C/EBP-β
R17831 T24885 T24897 themeOf SerpinB2,expression
R17839 T24897 T24898 themeOf expression,essential
R17830 T24884 T24898 causeOf C/EBP-β,essential
R17832 T24886 T24900 themeOf SerpinB2,expression
R17833 T24889 T24902 themeOf SerpinB2,expression
R17834 T24892 T24905 themeOf C/EBP-β,deficient
R17835 T24893 T24903 themeOf SerpinB2,expression
R17836 T24894 T24906 themeOf Cebpb,target
R17837 T24895 T24907 themeOf C/EBP-β,knockdown
R17838 T24896 T24908 themeOf SerpinB2,expression
R17840 T24897 T24899 themeOf expression,LPS-induced
R17841 T24900 T24901 themeOf expression,abrogated
R17842 T24903 T24904 themeOf expression,abrogated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25036 976-1076 Gene_expression denotes qPCR analysis of murine SerpinB2 mRNA expression in the lentiviral transduced peritoneal macrophages
T25035 139-188 Negative_regulation denotes SerpinB2 mRNA expression is abrogated in Cebpb−/−
T25034 289-326 Gene_expression denotes mRNA expression in untreated Cebpb+/+
T25033 289-326 Transcription denotes mRNA expression in untreated Cebpb+/+
T25032 65-122 Gene_expression denotes for constitutive and LPS-induced SerpinB2 mRNA expression
T25031 139-163 Gene_expression denotes SerpinB2 mRNA expression
T25030 464-471 Protein denotes C/EBP-β
T25029 428-436 Protein denotes SerpinB2
T25028 44-51 Protein denotes C/EBP-β
T25027 1000-1008 Protein denotes SerpinB2
T25026 270-288 Protein denotes of murine SerpinB2
T25025 795-798 Entity denotes LPS
T25024 815-820 Protein denotes 4 hrs
T25023 203-219 Protein denotes to Cebpb+/+ MEFs
T25022 256-260 Protein denotes qPCR
T25021 98-111 Protein denotes SerpinB2 mRNA
T25020 98-106 Protein denotes SerpinB2
T25019 740-773 Entity denotes Lentiviral transduced macrophages
T25018 86-97 Entity denotes LPS-induced
T25017 876-897 Protein denotes of endogenous C/EBP-β
T25016 1000-1013 Protein denotes SerpinB2 mRNA
T25015 139-147 Protein denotes SerpinB2
T25014 556-558 Protein denotes TG
T25013 719-724 Protein denotes Cebpb
T25012 635-640 Protein denotes CEBPB
T25011 289-293 Protein denotes mRNA
T25010 976-980 Protein denotes qPCR
T25009 956-961 Protein denotes CEBPB
T25008 331-337 Protein denotes Cebpb−
T25007 508-564 Entity denotes Thioglycollate-elicited peritoneal macrophages (TG macs)
T25006 556-563 Protein denotes TG macs
T25005 248-254 Entity denotes of LPS
T25004 1028-1076 Entity denotes the lentiviral transduced peritoneal macrophages
T25003 139-152 Protein denotes SerpinB2 mRNA
T25002 930-935 Protein denotes Cebpb
T25001 189-193 Protein denotes MEFs
T25000 340-345 Protein denotes MEFs,
T24999 472-506 Entity denotes deficient inflammatory macrophages
T24998 372-375 Entity denotes LPS
R17898 T25003 T25031 themeOf SerpinB2 mRNA,SerpinB2 mRNA expression
R17899 T25011 T25033 themeOf mRNA,mRNA expression in untreated Cebpb+/+
R17900 T25011 T25034 themeOf mRNA,mRNA expression in untreated Cebpb+/+
R17901 T25016 T25036 themeOf SerpinB2 mRNA,qPCR analysis of murine SerpinB2 mRNA expression in the lentiviral transduced peritoneal macrophages
R17902 T25021 T25032 themeOf SerpinB2 mRNA,for constitutive and LPS-induced SerpinB2 mRNA expression
R17903 T25031 T25035 themeOf SerpinB2 mRNA expression,SerpinB2 mRNA expression is abrogated in Cebpb−/−

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T24965 1014-1024 Gene_expression denotes expression
T24964 1000-1013 Protein denotes SerpinB2 mRNA
T24963 866-875 Negative_regulation denotes knockdown
T24962 866-875 Negative_regulation denotes knockdown
T24961 908-917 Binding denotes infection
T24960 908-917 Binding denotes infection
T24959 866-875 Negative_regulation denotes knockdown
T24958 946-967 Protein denotes not human CEBPB shRNA
T24957 930-941 Protein denotes Cebpb shRNA
T24956 890-897 Protein denotes C/EBP-β
T24955 629-646 Protein denotes Human CEBPB shRNA
T24954 594-627 Protein denotes murine specific lentiviral shRNAs
T24953 472-481 Negative_regulation denotes deficient
T24952 451-460 Negative_regulation denotes abrogated
T24951 437-447 Gene_expression denotes expression
T24950 464-471 Protein denotes C/EBP-β
T24949 428-436 Protein denotes SerpinB2
T24948 273-279 Positive_regulation denotes murine
T24947 273-279 Positive_regulation denotes murine
T24946 294-304 Gene_expression denotes expression
T24945 294-304 Gene_expression denotes expression
T24944 167-176 Negative_regulation denotes abrogated
T24943 153-163 Gene_expression denotes expression
T24942 331-344 Protein denotes Cebpb−/− MEFs
T24941 280-293 Protein denotes SerpinB2 mRNA
T24940 206-219 Protein denotes Cebpb+/+ MEFs
T24939 180-193 Protein denotes Cebpb−/− MEFs
T24938 139-152 Protein denotes SerpinB2 mRNA
T24937 55-64 Positive_regulation denotes essential
T24936 112-122 Gene_expression denotes expression
T24935 98-111 Protein denotes SerpinB2 mRNA
T24934 44-51 Protein denotes C/EBP-β
R17862 T24934 T24937 causeOf C/EBP-β,essential
R17863 T24935 T24936 themeOf SerpinB2 mRNA,expression
R17864 T24936 T24937 themeOf expression,essential
R17865 T24938 T24943 themeOf SerpinB2 mRNA,expression
R17866 T24941 T24945 themeOf SerpinB2 mRNA,expression
R17867 T24942 T24946 themeOf Cebpb−/− MEFs,expression
R17868 T24943 T24944 themeOf expression,abrogated
R17869 T24945 T24947 themeOf expression,murine
R17870 T24946 T24948 themeOf expression,murine
R17871 T24949 T24951 themeOf SerpinB2,expression
R17872 T24950 T24953 themeOf C/EBP-β,deficient
R17873 T24951 T24952 themeOf expression,abrogated
R17874 T24956 T24959 themeOf C/EBP-β,knockdown
R17875 T24957 T24960 themeOf Cebpb shRNA,infection
R17876 T24958 T24961 themeOf not human CEBPB shRNA,infection
R17877 T24960 T24962 themeOf infection,knockdown
R17878 T24961 T24963 themeOf infection,knockdown
R17879 T24964 T24965 themeOf SerpinB2 mRNA,expression

testone

Id Subject Object Predicate Lexical cue
T24534 1009-1024 Transcription denotes mRNA expression
T24533 472-481 Negative_regulation denotes deficient
T24532 289-293 Transcription denotes mRNA
T24531 148-163 Transcription denotes mRNA expression
T24530 107-122 Transcription denotes mRNA expression
T24529 90-97 Positive_regulation denotes induced
T24528 55-64 Positive_regulation denotes essential
T24527 1000-1008 Protein denotes SerpinB2
T24526 890-897 Protein denotes C/EBP-β
T24525 719-724 Protein denotes Cebpb
T24524 464-471 Protein denotes C/EBP-β
T24523 428-436 Protein denotes SerpinB2
T24522 331-336 Protein denotes Cebpb
T24521 318-323 Protein denotes Cebpb
T24520 280-288 Protein denotes SerpinB2
T24519 206-211 Protein denotes Cebpb
T24518 180-185 Protein denotes Cebpb
T24517 139-147 Protein denotes SerpinB2
T24516 98-106 Protein denotes SerpinB2
T24515 44-51 Protein denotes C/EBP-β
R17591 T24515 T24528 causeOf C/EBP-β,essential
R17592 T24516 T24530 themeOf SerpinB2,mRNA expression
R17593 T24517 T24531 themeOf SerpinB2,mRNA expression
R17594 T24524 T24533 themeOf C/EBP-β,deficient
R17595 T24527 T24534 themeOf SerpinB2,mRNA expression
R17596 T24529 T24528 themeOf induced,essential
R17597 T24530 T24529 themeOf mRNA expression,induced

test3

Id Subject Object Predicate Lexical cue
T24568 1009-1024 Transcription denotes mRNA expression
T24567 1000-1008 Protein denotes SerpinB2
T24566 890-897 Protein denotes C/EBP-β
T24565 719-724 Protein denotes Cebpb
T24564 472-481 Negative_regulation denotes deficient
T24563 464-471 Protein denotes C/EBP-β
T24562 451-460 Negative_regulation denotes abrogated
T24561 437-447 Gene_expression denotes expression
T24560 428-436 Protein denotes SerpinB2
T24559 331-336 Protein denotes Cebpb
T24558 318-323 Protein denotes Cebpb
T24557 289-304 Transcription denotes mRNA expression
T24556 280-288 Protein denotes SerpinB2
T24555 206-211 Protein denotes Cebpb
T24554 180-185 Protein denotes Cebpb
T24553 148-163 Transcription denotes mRNA expression
T24552 139-147 Protein denotes SerpinB2
T24551 107-122 Transcription denotes mRNA expression
T24550 98-106 Protein denotes SerpinB2
T24549 90-97 Positive_regulation denotes induced
T24548 44-51 Protein denotes C/EBP-β
T24547 1000-1008 Protein denotes SerpinB2
T24546 890-897 Protein denotes C/EBP-β
T24545 719-724 Protein denotes Cebpb
T24544 464-471 Protein denotes C/EBP-β
T24543 428-436 Protein denotes SerpinB2
T24542 331-336 Protein denotes Cebpb
T24541 318-323 Protein denotes Cebpb
T24540 280-288 Protein denotes SerpinB2
T24539 206-211 Protein denotes Cebpb
T24538 180-185 Protein denotes Cebpb
T24537 139-147 Protein denotes SerpinB2
T24536 98-106 Protein denotes SerpinB2
T24535 44-51 Protein denotes C/EBP-β
R17606 T24567 T24568 themeOf SerpinB2,mRNA expression
R17601 T24552 T24553 themeOf SerpinB2,mRNA expression
R17602 T24556 T24557 themeOf SerpinB2,mRNA expression
R17603 T24560 T24561 themeOf SerpinB2,expression
R17604 T24561 T24562 themeOf expression,abrogated
R17605 T24563 T24564 themeOf C/EBP-β,deficient
R17598 T24548 T24549 causeOf C/EBP-β,induced
R17599 T24550 T24551 themeOf SerpinB2,mRNA expression
R17600 T24551 T24549 themeOf mRNA expression,induced