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PMC:3589482 / 31882-32010 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14758 127-128 . denotes .
T14757 123-127 NNP denotes mRNA
T14756 114-122 NNP denotes SerpinB2
T14755 103-113 JJ denotes endogenous
T14754 100-102 IN denotes of
T14753 86-99 NN denotes transcription
T14752 72-85 JJ denotes LPS-inducible
T14751 68-71 CC denotes and
T14750 55-67 JJ denotes constitutive
T14749 45-54 VBG denotes mediating
T14748 41-44 IN denotes for
T14747 32-40 JJ denotes critical
T14746 29-31 VBZ denotes is
T14745 27-28 NN denotes β
T14744 26-27 : denotes -
T14743 21-26 NNP denotes C/EBP
T14742 16-20 IN denotes that
T14741 11-15 VBP denotes show
T14740 6-10 NNS denotes data
T14739 0-5 DT denotes These
R10871 T14739 T14740 det These,data
R10872 T14740 T14741 nsubj data,show
R10873 T14741 T14741 ROOT show,show
R10874 T14742 T14746 mark that,is
R10875 T14743 T14745 compound C/EBP,β
R10876 T14744 T14745 punct -,β
R10877 T14745 T14746 nsubj β,is
R10878 T14746 T14741 ccomp is,show
R10879 T14747 T14746 acomp critical,is
R10880 T14748 T14747 prep for,critical
R10881 T14749 T14748 pcomp mediating,for
R10882 T14750 T14753 amod constitutive,transcription
R10883 T14751 T14750 cc and,constitutive
R10884 T14752 T14750 conj LPS-inducible,constitutive
R10885 T14753 T14749 dobj transcription,mediating
R10886 T14754 T14753 prep of,transcription
R10887 T14755 T14757 amod endogenous,mRNA
R10888 T14756 T14757 compound SerpinB2,mRNA
R10889 T14757 T14754 pobj mRNA,of
R10890 T14758 T14741 punct .,show

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14231 123-127 NN denotes mRNA
T14230 114-122 NN denotes SerpinB2
T14229 103-113 JJ denotes endogenous
T14228 100-102 IN denotes of
T14227 86-99 NN denotes transcription
T14226 72-85 JJ denotes LPS-inducible
T14225 68-71 CC denotes and
T14224 55-67 JJ denotes constitutive
T14223 45-54 VB denotes mediating
T14222 41-44 IN denotes for
T14221 32-40 JJ denotes critical
T14220 29-31 VB denotes is
T14219 21-28 NN denotes C/EBP-β
T14218 16-20 IN denotes that
T14217 11-15 VB denotes show
T14216 6-10 NN denotes data
T14215 0-5 DT denotes These
R10497 T14216 T14215 arg1Of data,These
R10498 T14216 T14217 arg1Of data,show
R10499 T14219 T14220 arg1Of C/EBP-β,is
R10500 T14219 T14221 arg1Of C/EBP-β,critical
R10501 T14220 T14217 arg2Of is,show
R10502 T14220 T14218 arg1Of is,that
R10503 T14221 T14220 arg2Of critical,is
R10504 T14221 T14222 arg1Of critical,for
R10505 T14223 T14222 arg2Of mediating,for
R10506 T14224 T14225 arg1Of constitutive,and
R10507 T14226 T14225 arg2Of LPS-inducible,and
R10508 T14227 T14223 arg2Of transcription,mediating
R10509 T14227 T14224 arg1Of transcription,constitutive
R10510 T14227 T14226 arg1Of transcription,LPS-inducible
R10511 T14227 T14228 arg1Of transcription,of
R10512 T14231 T14228 arg2Of mRNA,of
R10513 T14231 T14229 arg1Of mRNA,endogenous
R10514 T14231 T14230 arg1Of mRNA,SerpinB2

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T14036 114-122 Protein denotes SerpinB2
T14035 21-28 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14309 114-122 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T14301 21-28 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-BP

Id Subject Object Predicate Lexical cue
T14038 86-99 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T13966 0-128 Sentence denotes These data show that C/EBP-β is critical for mediating constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA.
T195 0-128 Sentence denotes These data show that C/EBP-β is critical for mediating constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA.

simple1

Id Subject Object Predicate Lexical cue
T14058 114-122 Protein denotes SerpinB2
T14057 21-28 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14293 86-99 Transcription denotes transcription
T14292 72-85 Positive_regulation denotes LPS-inducible
T14269 114-122 Protein denotes SerpinB2
T14268 21-28 Protein denotes C/EBP-β
R10530 T14269 T14293 themeOf SerpinB2,transcription
R10543 T14293 T14292 themeOf transcription,LPS-inducible

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14403 114-122 Protein denotes SerpinB2
T14402 21-28 Protein denotes C/EBP-β
T14425 45-54 Positive_regulation denotes mediating
T14426 86-99 Transcription denotes transcription
R10604 T14402 T14425 causeOf C/EBP-β,mediating
R10605 T14403 T14426 themeOf SerpinB2,transcription
R10619 T14426 T14425 themeOf transcription,mediating

DLUT931

Id Subject Object Predicate Lexical cue
T14359 72-85 Positive_regulation denotes LPS-inducible
T14358 45-54 Positive_regulation denotes mediating
T14357 86-99 Transcription denotes transcription
T14328 114-122 Protein denotes SerpinB2
T14327 21-28 Protein denotes C/EBP-β
R10559 T14327 T14358 causeOf C/EBP-β,mediating
R10560 T14328 T14357 themeOf SerpinB2,transcription
R10579 T14357 T14358 themeOf transcription,mediating
R10580 T14357 T14359 themeOf transcription,LPS-inducible

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14518 21-28 Protein denotes C/EBP-β
T14499 114-122 Protein denotes SerpinB2
T14498 100-127 Protein denotes of endogenous SerpinB2 mRNA
T14549 55-127 Transcription denotes constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA
T14536 41-127 Regulation denotes for mediating constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA
R10666 T14498 T14549 themeOf of endogenous SerpinB2 mRNA,constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA
R10685 T14549 T14536 themeOf constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA,for mediating constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14461 45-54 Positive_regulation denotes mediating
T14460 86-99 Transcription denotes transcription
T14459 114-127 Protein denotes SerpinB2 mRNA
T14458 21-28 Protein denotes C/EBP-β
R10640 T14458 T14461 causeOf C/EBP-β,mediating
R10641 T14459 T14460 themeOf SerpinB2 mRNA,transcription
R10642 T14460 T14461 themeOf transcription,mediating

testone

Id Subject Object Predicate Lexical cue
T13898 86-99 Transcription denotes transcription
T13897 76-85 Positive_regulation denotes inducible
T13896 32-40 Positive_regulation denotes critical
T13876 114-122 Protein denotes SerpinB2
T13875 21-28 Protein denotes C/EBP-β
R10260 T13875 T13896 causeOf C/EBP-β,critical
R10261 T13876 T13898 themeOf SerpinB2,transcription
R10271 T13897 T13896 themeOf inducible,critical
R10272 T13898 T13897 themeOf transcription,inducible

test3

Id Subject Object Predicate Lexical cue
T13959 114-122 Protein denotes SerpinB2
T13958 86-99 Transcription denotes transcription
T13957 76-85 Positive_regulation denotes inducible
T13956 32-40 Positive_regulation denotes critical
T13955 21-28 Protein denotes C/EBP-β
T13917 114-122 Protein denotes SerpinB2
T13916 21-28 Protein denotes C/EBP-β
R10295 T13955 T13957 causeOf C/EBP-β,inducible
R10296 T13955 T13956 causeOf C/EBP-β,critical
R10297 T13958 T13957 themeOf transcription,inducible
R10298 T13959 T13958 themeOf SerpinB2,transcription