> top > docs > PMC:3589482 > spans > 31301-31502 > annotations

PMC:3589482 / 31301-31502 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14676 200-201 . denotes .
T14675 191-200 JJ denotes wild-type
T14674 188-190 TO denotes to
T14673 179-187 VBN denotes compared
T14672 176-178 IN denotes as
T14671 171-175 NNS denotes MEFs
T14670 169-170 CD denotes −
T14669 168-169 VBD denotes /
T14668 167-168 NNP denotes −
T14667 162-167 NNP denotes Cebpb
T14666 159-161 IN denotes in
T14665 150-158 VBN denotes dampened
T14664 136-149 RB denotes significantly
T14663 132-135 VBD denotes was
T14662 121-131 NN denotes expression
T14661 116-120 NNP denotes mRNA
T14660 107-115 NNP denotes SerpinB2
T14659 92-106 JJ denotes LPS-stimulated
T14658 84-91 IN denotes whereas
T14657 82-83 , denotes ,
T14656 81-82 -RRB- denotes )
T14655 79-81 NNP denotes 6A
T14654 74-78 NNP denotes Fig.
T14653 73-74 -LRB- denotes (
T14652 68-72 NNS denotes MEFs
T14651 58-67 JJ denotes wild-type
T14650 55-57 IN denotes in
T14649 44-54 NN denotes expression
T14648 39-43 NNP denotes mRNA
T14647 30-38 NNP denotes SerpinB2
T14646 27-29 IN denotes in
T14645 18-26 NN denotes increase
T14644 15-17 DT denotes an
T14643 4-14 VBD denotes stimulated
T14642 0-3 NNP denotes LPS
R10774 T14642 T14643 nsubj LPS,stimulated
R10775 T14643 T14643 ROOT stimulated,stimulated
R10776 T14644 T14645 det an,increase
R10777 T14645 T14643 dobj increase,stimulated
R10778 T14646 T14645 prep in,increase
R10779 T14647 T14648 compound SerpinB2,mRNA
R10780 T14648 T14649 compound mRNA,expression
R10781 T14649 T14646 pobj expression,in
R10782 T14650 T14649 prep in,expression
R10783 T14651 T14652 amod wild-type,MEFs
R10784 T14652 T14650 pobj MEFs,in
R10785 T14653 T14655 punct (,6A
R10786 T14654 T14655 compound Fig.,6A
R10787 T14655 T14645 appos 6A,increase
R10788 T14656 T14655 punct ),6A
R10789 T14657 T14643 punct ",",stimulated
R10790 T14658 T14665 mark whereas,dampened
R10791 T14659 T14662 amod LPS-stimulated,expression
R10792 T14660 T14661 compound SerpinB2,mRNA
R10793 T14661 T14662 compound mRNA,expression
R10794 T14662 T14665 nsubjpass expression,dampened
R10795 T14663 T14665 auxpass was,dampened
R10796 T14664 T14665 advmod significantly,dampened
R10797 T14665 T14643 advcl dampened,stimulated
R10798 T14666 T14665 prep in,dampened
R10799 T14667 T14668 compound Cebpb,−
R10800 T14668 T14666 pobj −,in
R10801 T14669 T14643 conj /,stimulated
R10802 T14670 T14671 nummod −,MEFs
R10803 T14671 T14669 dobj MEFs,/
R10804 T14672 T14669 prep as,/
R10805 T14673 T14672 prep compared,as
R10806 T14674 T14675 aux to,wild-type
R10807 T14675 T14673 xcomp wild-type,compared
R10808 T14676 T14643 punct .,stimulated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14158 191-200 JJ denotes wild-type
T14157 188-190 TO denotes to
T14156 179-187 VB denotes compared
T14155 176-178 IN denotes as
T14154 171-175 NN denotes MEFs
T14153 162-170 NNP denotes Cebpb−/−
T14152 159-161 IN denotes in
T14151 150-158 VB denotes dampened
T14150 136-149 RB denotes significantly
T14149 132-135 VB denotes was
T14148 121-131 NN denotes expression
T14147 116-120 NN denotes mRNA
T14146 107-115 NN denotes SerpinB2
T14145 92-106 JJ denotes LPS-stimulated
T14144 84-91 IN denotes whereas
T14143 82-83 -COMMA- denotes ,
T14142 81-82 -RRB- denotes )
T14141 79-81 NN denotes 6A
T14140 74-78 NNP denotes Fig.
T14139 73-74 -LRB- denotes (
T14138 68-72 NN denotes MEFs
T14137 58-67 JJ denotes wild-type
T14136 55-57 IN denotes in
T14135 44-54 NN denotes expression
T14134 39-43 NN denotes mRNA
T14133 30-38 NN denotes SerpinB2
T14132 27-29 IN denotes in
T14131 18-26 NN denotes increase
T14130 15-17 DT denotes an
T14129 4-14 VB denotes stimulated
T14128 0-3 NN denotes LPS
R10407 T14128 T14129 arg1Of LPS,stimulated
R10408 T14129 T14139 arg1Of stimulated,(
R10409 T14129 T14143 arg1Of stimulated,","
R10410 T14129 T14144 arg1Of stimulated,whereas
R10411 T14131 T14129 arg2Of increase,stimulated
R10412 T14131 T14130 arg1Of increase,an
R10413 T14131 T14132 arg1Of increase,in
R10414 T14131 T14136 arg1Of increase,in
R10415 T14135 T14132 arg2Of expression,in
R10416 T14135 T14133 arg1Of expression,SerpinB2
R10417 T14135 T14134 arg1Of expression,mRNA
R10418 T14138 T14136 arg2Of MEFs,in
R10419 T14138 T14137 arg1Of MEFs,wild-type
R10420 T14141 T14139 arg2Of 6A,(
R10421 T14141 T14140 arg1Of 6A,Fig.
R10422 T14142 T14139 arg3Of ),(
R10423 T14148 T14145 arg1Of expression,LPS-stimulated
R10424 T14148 T14146 arg1Of expression,SerpinB2
R10425 T14148 T14147 arg1Of expression,mRNA
R10426 T14148 T14149 arg1Of expression,was
R10427 T14148 T14151 arg2Of expression,dampened
R10428 T14151 T14144 arg2Of dampened,whereas
R10429 T14151 T14149 arg2Of dampened,was
R10430 T14151 T14150 arg1Of dampened,significantly
R10431 T14151 T14152 arg1Of dampened,in
R10432 T14154 T14152 arg2Of MEFs,in
R10433 T14154 T14153 arg1Of MEFs,Cebpb−/−
R10434 T14155 T14151 arg3Of as,dampened
R10435 T14156 T14155 arg2Of compared,as
R10436 T14156 T14157 arg1Of compared,to
R10437 T14158 T14157 arg2Of wild-type,to

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T14031 162-167 Protein denotes Cebpb
T14030 107-115 Protein denotes SerpinB2
T14029 30-38 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14307 107-115 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T14306 30-38 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T13963 0-201 Sentence denotes LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs (Fig. 6A), whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb−/− MEFs as compared to wild-type.
T192 0-201 Sentence denotes LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs (Fig. 6A), whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb−/− MEFs as compared to wild-type.

simple1

Id Subject Object Predicate Lexical cue
T14053 162-167 Protein denotes Cebpb
T14052 107-115 Protein denotes SerpinB2
T14051 30-38 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14285 121-131 Transcription denotes expression
T14284 18-26 Positive_regulation denotes increase
T14283 44-54 Transcription denotes expression
T14282 150-158 Positive_regulation denotes dampened
T14281 4-14 Positive_regulation denotes stimulated
T14280 92-106 Positive_regulation denotes LPS-stimulated
T14264 162-167 Protein denotes Cebpb
T14263 107-115 Protein denotes SerpinB2
T14262 30-38 Protein denotes SerpinB2
R10525 T14262 T14283 themeOf SerpinB2,expression
R10526 T14263 T14285 themeOf SerpinB2,expression
R10536 T14283 T14284 themeOf expression,increase
R10537 T14284 T14281 themeOf increase,stimulated
R10538 T14285 T14280 themeOf expression,LPS-stimulated
R10539 T14285 T14282 themeOf expression,dampened

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14398 162-167 Protein denotes Cebpb
T14397 107-115 Protein denotes SerpinB2
T14396 30-38 Protein denotes SerpinB2
T14418 44-54 Transcription denotes expression
T14417 18-26 Positive_regulation denotes increase
T14416 92-106 Positive_regulation denotes LPS-stimulated
T14415 150-158 Regulation denotes dampened
T14414 121-131 Transcription denotes expression
R10597 T14396 T14418 themeOf SerpinB2,expression
R10598 T14397 T14414 themeOf SerpinB2,expression
R10599 T14398 T14415 themeOf Cebpb,dampened
R10612 T14414 T14416 themeOf expression,LPS-stimulated
R10613 T14414 T14415 themeOf expression,dampened
R10614 T14418 T14417 themeOf expression,increase

DLUT931

Id Subject Object Predicate Lexical cue
T14348 4-14 Positive_regulation denotes stimulated
T14347 92-106 Positive_regulation denotes LPS-stimulated
T14346 18-26 Positive_regulation denotes increase
T14345 150-158 Positive_regulation denotes dampened
T14344 121-131 Transcription denotes expression
T14343 44-54 Transcription denotes expression
T14323 162-167 Protein denotes Cebpb
T14322 107-115 Protein denotes SerpinB2
T14321 30-38 Protein denotes SerpinB2
R10554 T14321 T14343 themeOf SerpinB2,expression
R10555 T14322 T14344 themeOf SerpinB2,expression
R10568 T14343 T14346 themeOf expression,increase
R10569 T14344 T14345 themeOf expression,dampened
R10570 T14344 T14347 themeOf expression,LPS-stimulated
R10571 T14346 T14348 themeOf increase,stimulated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14532 74-77 Protein denotes Fig
T14529 107-115 Protein denotes SerpinB2
T14527 0-3 Entity denotes LPS
T14521 162-168 Protein denotes Cebpb−
T14513 92-95 Entity denotes LPS
T14507 58-72 Protein denotes wild-type MEFs
T14506 116-120 Protein denotes mRNA
T14504 30-38 Protein denotes SerpinB2
T14502 171-175 Protein denotes MEFs
T14501 30-43 Protein denotes SerpinB2 mRNA
T14547 84-168 Negative_regulation denotes whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb−
T14546 84-168 Negative_regulation denotes whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb−
T14545 27-54 Gene_expression denotes in SerpinB2 mRNA expression
T14543 116-131 Transcription denotes mRNA expression
T14542 116-131 Gene_expression denotes mRNA expression
T14541 0-72 Positive_regulation denotes LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs
T14540 15-72 Positive_regulation denotes an increase in SerpinB2 mRNA expression in wild-type MEFs
T14539 92-115 Positive_regulation denotes LPS-stimulated SerpinB2
R10669 T14501 T14545 themeOf SerpinB2 mRNA,in SerpinB2 mRNA expression
R10672 T14506 T14542 themeOf mRNA,mRNA expression
R10673 T14506 T14543 themeOf mRNA,mRNA expression
R10675 T14513 T14539 causeOf LPS,LPS-stimulated SerpinB2
R10677 T14527 T14541 causeOf LPS,LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs
R10678 T14529 T14539 themeOf SerpinB2,LPS-stimulated SerpinB2
R10681 T14540 T14541 themeOf an increase in SerpinB2 mRNA expression in wild-type MEFs,LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs
R10682 T14542 T14547 themeOf mRNA expression,whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb−
R10683 T14543 T14546 themeOf mRNA expression,whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb−
R10684 T14545 T14540 themeOf in SerpinB2 mRNA expression,an increase in SerpinB2 mRNA expression in wild-type MEFs

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14450 18-26 Positive_regulation denotes increase
T14449 150-158 Positive_regulation denotes dampened
T14448 121-131 Gene_expression denotes expression
T14447 44-54 Gene_expression denotes expression
T14446 162-175 Protein denotes Cebpb−/− MEFs
T14445 107-120 Protein denotes SerpinB2 mRNA
T14444 30-43 Protein denotes SerpinB2 mRNA
R10632 T14444 T14447 themeOf SerpinB2 mRNA,expression
R10633 T14445 T14448 themeOf SerpinB2 mRNA,expression
R10634 T14447 T14450 themeOf expression,increase
R10635 T14448 T14449 themeOf expression,dampened

testone

Id Subject Object Predicate Lexical cue
T13889 116-131 Transcription denotes mRNA expression
T13888 96-106 Positive_regulation denotes stimulated
T13887 39-54 Transcription denotes mRNA expression
T13886 18-26 Positive_regulation denotes increase
T13871 162-167 Protein denotes Cebpb
T13870 107-115 Protein denotes SerpinB2
T13869 30-38 Protein denotes SerpinB2
R10255 T13869 T13887 themeOf SerpinB2,mRNA expression
R10256 T13870 T13889 themeOf SerpinB2,mRNA expression
R10265 T13887 T13886 themeOf mRNA expression,increase
R10266 T13889 T13888 themeOf mRNA expression,stimulated

test3

Id Subject Object Predicate Lexical cue
T13945 162-167 Protein denotes Cebpb
T13944 116-131 Transcription denotes mRNA expression
T13943 107-115 Protein denotes SerpinB2
T13942 96-106 Positive_regulation denotes stimulated
T13941 39-54 Transcription denotes mRNA expression
T13940 30-38 Protein denotes SerpinB2
T13939 18-26 Positive_regulation denotes increase
T13912 162-167 Protein denotes Cebpb
T13911 107-115 Protein denotes SerpinB2
T13910 30-38 Protein denotes SerpinB2
R10283 T13940 T13941 themeOf SerpinB2,mRNA expression
R10284 T13941 T13939 themeOf mRNA expression,increase
R10285 T13943 T13944 themeOf SerpinB2,mRNA expression
R10286 T13944 T13942 themeOf mRNA expression,stimulated