PMC:3589482 / 31301-31373 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/3589482","sourcedb":"PMC","sourceid":"3589482","source_url":"http://www.ncbi.nlm.nih.gov/pmc/3589482","text":"LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs","tracks":[{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T14652","span":{"begin":68,"end":72},"obj":"NNS"},{"id":"T14651","span":{"begin":58,"end":67},"obj":"JJ"},{"id":"T14650","span":{"begin":55,"end":57},"obj":"IN"},{"id":"T14649","span":{"begin":44,"end":54},"obj":"NN"},{"id":"T14648","span":{"begin":39,"end":43},"obj":"NNP"},{"id":"T14647","span":{"begin":30,"end":38},"obj":"NNP"},{"id":"T14646","span":{"begin":27,"end":29},"obj":"IN"},{"id":"T14645","span":{"begin":18,"end":26},"obj":"NN"},{"id":"T14644","span":{"begin":15,"end":17},"obj":"DT"},{"id":"T14643","span":{"begin":4,"end":14},"obj":"VBD"},{"id":"T14642","span":{"begin":0,"end":3},"obj":"NNP"}],"relations":[{"id":"R10774","pred":"nsubj","subj":"T14642","obj":"T14643"},{"id":"R10775","pred":"ROOT","subj":"T14643","obj":"T14643"},{"id":"R10776","pred":"det","subj":"T14644","obj":"T14645"},{"id":"R10777","pred":"dobj","subj":"T14645","obj":"T14643"},{"id":"R10778","pred":"prep","subj":"T14646","obj":"T14645"},{"id":"R10779","pred":"compound","subj":"T14647","obj":"T14648"},{"id":"R10780","pred":"compound","subj":"T14648","obj":"T14649"},{"id":"R10781","pred":"pobj","subj":"T14649","obj":"T14646"},{"id":"R10782","pred":"prep","subj":"T14650","obj":"T14649"},{"id":"R10783","pred":"amod","subj":"T14651","obj":"T14652"},{"id":"R10784","pred":"pobj","subj":"T14652","obj":"T14650"}],"attributes":[{"subj":"T14652","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T14651","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T14650","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T14649","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T14648","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T14647","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T14646","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T14645","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T14644","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T14643","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T14642","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"}]},{"project":"pmc-enju-pas","denotations":[{"id":"T14138","span":{"begin":68,"end":72},"obj":"NN"},{"id":"T14137","span":{"begin":58,"end":67},"obj":"JJ"},{"id":"T14136","span":{"begin":55,"end":57},"obj":"IN"},{"id":"T14135","span":{"begin":44,"end":54},"obj":"NN"},{"id":"T14134","span":{"begin":39,"end":43},"obj":"NN"},{"id":"T14133","span":{"begin":30,"end":38},"obj":"NN"},{"id":"T14132","span":{"begin":27,"end":29},"obj":"IN"},{"id":"T14131","span":{"begin":18,"end":26},"obj":"NN"},{"id":"T14130","span":{"begin":15,"end":17},"obj":"DT"},{"id":"T14129","span":{"begin":4,"end":14},"obj":"VB"},{"id":"T14128","span":{"begin":0,"end":3},"obj":"NN"}],"relations":[{"id":"R10407","pred":"arg1Of","subj":"T14128","obj":"T14129"},{"id":"R10411","pred":"arg2Of","subj":"T14131","obj":"T14129"},{"id":"R10412","pred":"arg1Of","subj":"T14131","obj":"T14130"},{"id":"R10413","pred":"arg1Of","subj":"T14131","obj":"T14132"},{"id":"R10414","pred":"arg1Of","subj":"T14131","obj":"T14136"},{"id":"R10415","pred":"arg2Of","subj":"T14135","obj":"T14132"},{"id":"R10416","pred":"arg1Of","subj":"T14135","obj":"T14133"},{"id":"R10417","pred":"arg1Of","subj":"T14135","obj":"T14134"},{"id":"R10418","pred":"arg2Of","subj":"T14138","obj":"T14136"},{"id":"R10419","pred":"arg1Of","subj":"T14138","obj":"T14137"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"attributes":[{"subj":"T14138","pred":"source","obj":"pmc-enju-pas"},{"subj":"T14137","pred":"source","obj":"pmc-enju-pas"},{"subj":"T14136","pred":"source","obj":"pmc-enju-pas"},{"subj":"T14135","pred":"source","obj":"pmc-enju-pas"},{"subj":"T14134","pred":"source","obj":"pmc-enju-pas"},{"subj":"T14133","pred":"source","obj":"pmc-enju-pas"},{"subj":"T14132","pred":"source","obj":"pmc-enju-pas"},{"subj":"T14131","pred":"source","obj":"pmc-enju-pas"},{"subj":"T14130","pred":"source","obj":"pmc-enju-pas"},{"subj":"T14129","pred":"source","obj":"pmc-enju-pas"},{"subj":"T14128","pred":"source","obj":"pmc-enju-pas"}]},{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T14029","span":{"begin":30,"end":38},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"attributes":[{"subj":"T14029","pred":"source","obj":"bionlp-st-ge-2016-test-proteins"}]},{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T14306","span":{"begin":30,"end":38},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"attributes":[{"subj":"T14306","pred":"source","obj":"bionlp-st-ge-2016-uniprot"}]},{"project":"simple1","denotations":[{"id":"T14051","span":{"begin":30,"end":38},"obj":"Protein"}],"attributes":[{"subj":"T14051","pred":"source","obj":"simple1"}]},{"project":"BioNLP16_DUT","denotations":[{"id":"T14284","span":{"begin":18,"end":26},"obj":"Positive_regulation"},{"id":"T14283","span":{"begin":44,"end":54},"obj":"Transcription"},{"id":"T14281","span":{"begin":4,"end":14},"obj":"Positive_regulation"},{"id":"T14262","span":{"begin":30,"end":38},"obj":"Protein"}],"relations":[{"id":"R10525","pred":"themeOf","subj":"T14262","obj":"T14283"},{"id":"R10536","pred":"themeOf","subj":"T14283","obj":"T14284"},{"id":"R10537","pred":"themeOf","subj":"T14284","obj":"T14281"}],"attributes":[{"subj":"T14284","pred":"source","obj":"BioNLP16_DUT"},{"subj":"T14283","pred":"source","obj":"BioNLP16_DUT"},{"subj":"T14281","pred":"source","obj":"BioNLP16_DUT"},{"subj":"T14262","pred":"source","obj":"BioNLP16_DUT"}]},{"project":"BioNLP16_Messiy","denotations":[{"id":"T14396","span":{"begin":30,"end":38},"obj":"Protein"},{"id":"T14418","span":{"begin":44,"end":54},"obj":"Transcription"},{"id":"T14417","span":{"begin":18,"end":26},"obj":"Positive_regulation"}],"relations":[{"id":"R10597","pred":"themeOf","subj":"T14396","obj":"T14418"},{"id":"R10614","pred":"themeOf","subj":"T14418","obj":"T14417"}],"attributes":[{"subj":"T14396","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T14418","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T14417","pred":"source","obj":"BioNLP16_Messiy"}]},{"project":"DLUT931","denotations":[{"id":"T14348","span":{"begin":4,"end":14},"obj":"Positive_regulation"},{"id":"T14346","span":{"begin":18,"end":26},"obj":"Positive_regulation"},{"id":"T14343","span":{"begin":44,"end":54},"obj":"Transcription"},{"id":"T14321","span":{"begin":30,"end":38},"obj":"Protein"}],"relations":[{"id":"R10554","pred":"themeOf","subj":"T14321","obj":"T14343"},{"id":"R10568","pred":"themeOf","subj":"T14343","obj":"T14346"},{"id":"R10571","pred":"themeOf","subj":"T14346","obj":"T14348"}],"attributes":[{"subj":"T14348","pred":"source","obj":"DLUT931"},{"subj":"T14346","pred":"source","obj":"DLUT931"},{"subj":"T14343","pred":"source","obj":"DLUT931"},{"subj":"T14321","pred":"source","obj":"DLUT931"}]},{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T14527","span":{"begin":0,"end":3},"obj":"Entity"},{"id":"T14507","span":{"begin":58,"end":72},"obj":"Protein"},{"id":"T14504","span":{"begin":30,"end":38},"obj":"Protein"},{"id":"T14501","span":{"begin":30,"end":43},"obj":"Protein"},{"id":"T14545","span":{"begin":27,"end":54},"obj":"Gene_expression"},{"id":"T14541","span":{"begin":0,"end":72},"obj":"Positive_regulation"},{"id":"T14540","span":{"begin":15,"end":72},"obj":"Positive_regulation"}],"relations":[{"id":"R10669","pred":"themeOf","subj":"T14501","obj":"T14545"},{"id":"R10677","pred":"causeOf","subj":"T14527","obj":"T14541"},{"id":"R10681","pred":"themeOf","subj":"T14540","obj":"T14541"},{"id":"R10684","pred":"themeOf","subj":"T14545","obj":"T14540"}],"attributes":[{"subj":"T14527","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T14507","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T14504","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T14501","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T14545","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T14541","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T14540","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"}]},{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T14450","span":{"begin":18,"end":26},"obj":"Positive_regulation"},{"id":"T14447","span":{"begin":44,"end":54},"obj":"Gene_expression"},{"id":"T14444","span":{"begin":30,"end":43},"obj":"Protein"}],"relations":[{"id":"R10632","pred":"themeOf","subj":"T14444","obj":"T14447"},{"id":"R10634","pred":"themeOf","subj":"T14447","obj":"T14450"}],"attributes":[{"subj":"T14450","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T14447","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T14444","pred":"source","obj":"bionlp-st-ge-2016-test-tees"}]},{"project":"testone","denotations":[{"id":"T13887","span":{"begin":39,"end":54},"obj":"Transcription"},{"id":"T13886","span":{"begin":18,"end":26},"obj":"Positive_regulation"},{"id":"T13869","span":{"begin":30,"end":38},"obj":"Protein"}],"relations":[{"id":"R10255","pred":"themeOf","subj":"T13869","obj":"T13887"},{"id":"R10265","pred":"themeOf","subj":"T13887","obj":"T13886"}],"attributes":[{"subj":"T13887","pred":"source","obj":"testone"},{"subj":"T13886","pred":"source","obj":"testone"},{"subj":"T13869","pred":"source","obj":"testone"}]},{"project":"test3","denotations":[{"id":"T13941","span":{"begin":39,"end":54},"obj":"Transcription"},{"id":"T13940","span":{"begin":30,"end":38},"obj":"Protein"},{"id":"T13939","span":{"begin":18,"end":26},"obj":"Positive_regulation"},{"id":"T13910","span":{"begin":30,"end":38},"obj":"Protein"}],"relations":[{"id":"R10283","pred":"themeOf","subj":"T13940","obj":"T13941"},{"id":"R10284","pred":"themeOf","subj":"T13941","obj":"T13939"}],"attributes":[{"subj":"T13941","pred":"source","obj":"test3"},{"subj":"T13940","pred":"source","obj":"test3"},{"subj":"T13939","pred":"source","obj":"test3"},{"subj":"T13910","pred":"source","obj":"test3"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"bionlp-st-ge-2016-spacy-parsed","color":"#e793ec","default":true},{"id":"pmc-enju-pas","color":"#93eccd"},{"id":"bionlp-st-ge-2016-test-proteins","color":"#ecb393"},{"id":"bionlp-st-ge-2016-uniprot","color":"#9993ec"},{"id":"simple1","color":"#a6ec93"},{"id":"BioNLP16_DUT","color":"#ec93c0"},{"id":"BioNLP16_Messiy","color":"#93dbec"},{"id":"DLUT931","color":"#ece393"},{"id":"bionlp-st-ge-2016-test-ihmc","color":"#c993ec"},{"id":"bionlp-st-ge-2016-test-tees","color":"#93ecaf"},{"id":"testone","color":"#ec9593"},{"id":"test3","color":"#93aaec"}]}]}}