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PMC:3589482 / 31169-31300 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14641 130-131 . denotes .
T14640 120-130 NN denotes expression
T14639 115-119 NNP denotes mRNA
T14638 106-114 NNP denotes SerpinB2
T14637 95-105 JJ denotes endogenous
T14636 84-94 VBD denotes attenuated
T14635 82-83 NN denotes β
T14634 81-82 : denotes -
T14633 76-81 NNP denotes C/EBP
T14632 73-75 IN denotes of
T14631 65-72 NN denotes absence
T14630 61-64 DT denotes the
T14629 57-60 CC denotes and
T14628 48-56 NNP denotes SerpinB2
T14627 37-47 JJ denotes endogenous
T14626 34-36 IN denotes of
T14625 27-33 NNS denotes levels
T14624 23-26 JJ denotes low
T14623 15-22 VB denotes express
T14622 10-14 NNS denotes MEFs
T14621 0-9 JJ denotes Wild-type
R10753 T14621 T14623 advmod Wild-type,express
R10754 T14622 T14623 nsubj MEFs,express
R10755 T14623 T14623 ROOT express,express
R10756 T14624 T14625 amod low,levels
R10757 T14625 T14623 dobj levels,express
R10758 T14626 T14625 prep of,levels
R10759 T14627 T14628 compound endogenous,SerpinB2
R10760 T14628 T14626 pobj SerpinB2,of
R10761 T14629 T14628 cc and,SerpinB2
R10762 T14630 T14631 det the,absence
R10763 T14631 T14628 conj absence,SerpinB2
R10764 T14632 T14631 prep of,absence
R10765 T14633 T14635 compound C/EBP,β
R10766 T14634 T14635 punct -,β
R10767 T14635 T14632 pobj β,of
R10768 T14636 T14640 amod attenuated,expression
R10769 T14637 T14640 amod endogenous,expression
R10770 T14638 T14639 compound SerpinB2,mRNA
R10771 T14639 T14640 compound mRNA,expression
R10772 T14640 T14623 dobj expression,express
R10773 T14641 T14623 punct .,express

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14127 120-130 NN denotes expression
T14126 115-119 NN denotes mRNA
T14125 106-114 NN denotes SerpinB2
T14124 95-105 JJ denotes endogenous
T14123 84-94 VB denotes attenuated
T14122 76-83 NN denotes C/EBP-β
T14121 73-75 IN denotes of
T14120 65-72 NN denotes absence
T14119 61-64 DT denotes the
T14118 57-60 CC denotes and
T14117 48-56 NN denotes SerpinB2
T14116 37-47 JJ denotes endogenous
T14115 34-36 IN denotes of
T14114 27-33 NN denotes levels
T14113 23-26 JJ denotes low
T14112 15-22 VB denotes express
T14111 10-14 NN denotes MEFs
T14110 0-9 JJ denotes Wild-type
R10390 T14111 T14110 arg1Of MEFs,Wild-type
R10391 T14111 T14112 arg1Of MEFs,express
R10392 T14112 T14118 arg1Of express,and
R10393 T14114 T14112 arg2Of levels,express
R10394 T14114 T14113 arg1Of levels,low
R10395 T14114 T14115 arg1Of levels,of
R10396 T14117 T14115 arg2Of SerpinB2,of
R10397 T14117 T14116 arg1Of SerpinB2,endogenous
R10398 T14120 T14119 arg1Of absence,the
R10399 T14120 T14121 arg1Of absence,of
R10400 T14120 T14123 arg1Of absence,attenuated
R10401 T14122 T14121 arg2Of C/EBP-β,of
R10402 T14123 T14118 arg2Of attenuated,and
R10403 T14127 T14123 arg2Of expression,attenuated
R10404 T14127 T14124 arg1Of expression,endogenous
R10405 T14127 T14125 arg1Of expression,SerpinB2
R10406 T14127 T14126 arg1Of expression,mRNA

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T14028 106-114 Protein denotes SerpinB2
T14027 76-83 Protein denotes C/EBP-β
T14026 48-56 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14298 76-83 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T14305 106-114 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T14304 48-56 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T13962 0-131 Sentence denotes Wild-type MEFs express low levels of endogenous SerpinB2 and the absence of C/EBP-β attenuated endogenous SerpinB2 mRNA expression.
T191 0-131 Sentence denotes Wild-type MEFs express low levels of endogenous SerpinB2 and the absence of C/EBP-β attenuated endogenous SerpinB2 mRNA expression.

simple1

Id Subject Object Predicate Lexical cue
T14050 106-114 Protein denotes SerpinB2
T14049 76-83 Protein denotes C/EBP-β
T14048 48-56 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14279 120-130 Transcription denotes expression
T14278 15-22 Gene_expression denotes express
T14277 84-94 Negative_regulation denotes attenuated
T14276 65-72 Negative_regulation denotes absence
T14261 48-56 Protein denotes SerpinB2
T14260 106-114 Protein denotes SerpinB2
T14259 76-83 Protein denotes C/EBP-β
R10520 T14259 T14276 themeOf C/EBP-β,absence
R10521 T14260 T14279 themeOf SerpinB2,expression
R10522 T14261 T14277 themeOf SerpinB2,attenuated
R10523 T14261 T14279 themeOf SerpinB2,expression
R10524 T14261 T14278 themeOf SerpinB2,express
R10534 T14279 T14277 themeOf expression,attenuated
R10535 T14279 T14277 themeOf expression,attenuated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14395 48-56 Protein denotes SerpinB2
T14394 106-114 Protein denotes SerpinB2
T14393 76-83 Protein denotes C/EBP-β
T14413 15-22 Gene_expression denotes express
T14412 120-130 Transcription denotes expression
T14411 65-72 Negative_regulation denotes absence
T14410 84-94 Negative_regulation denotes attenuated
R10594 T14393 T14411 themeOf C/EBP-β,absence
R10595 T14394 T14412 themeOf SerpinB2,expression
R10596 T14395 T14413 themeOf SerpinB2,express
R10610 T14412 T14410 themeOf expression,attenuated
R10611 T14413 T14410 themeOf express,attenuated

DLUT931

Id Subject Object Predicate Lexical cue
T14342 95-105 Positive_regulation denotes endogenous
T14341 84-94 Negative_regulation denotes attenuated
T14340 120-130 Transcription denotes expression
T14339 65-72 Negative_regulation denotes absence
T14338 23-26 Positive_regulation denotes low
T14337 15-22 Gene_expression denotes express
T14320 48-56 Protein denotes SerpinB2
T14319 106-114 Protein denotes SerpinB2
T14318 76-83 Protein denotes C/EBP-β
R10551 T14318 T14339 themeOf C/EBP-β,absence
R10552 T14319 T14340 themeOf SerpinB2,expression
R10553 T14320 T14337 themeOf SerpinB2,express
R10565 T14337 T14338 themeOf express,low
R10566 T14340 T14341 themeOf expression,attenuated
R10567 T14340 T14342 themeOf expression,endogenous

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14531 106-119 Protein denotes SerpinB2 mRNA
T14530 73-83 Protein denotes of C/EBP-β
T14525 37-56 Protein denotes endogenous SerpinB2
T14520 0-14 Protein denotes Wild-type MEFs
T14514 106-114 Protein denotes SerpinB2
T14548 95-130 Gene_expression denotes endogenous SerpinB2 mRNA expression
R10679 T14531 T14548 themeOf SerpinB2 mRNA,endogenous SerpinB2 mRNA expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14443 120-130 Gene_expression denotes expression
T14442 76-119 Protein denotes C/EBP-β attenuated endogenous SerpinB2 mRNA
R10631 T14442 T14443 themeOf C/EBP-β attenuated endogenous SerpinB2 mRNA,expression

testone

Id Subject Object Predicate Lexical cue
T13885 115-130 Transcription denotes mRNA expression
T13884 84-94 Negative_regulation denotes attenuated
T13883 15-22 Gene_expression denotes express
T13868 106-114 Protein denotes SerpinB2
T13867 76-83 Protein denotes C/EBP-β
T13866 48-56 Protein denotes SerpinB2
R10252 T13866 T13883 themeOf SerpinB2,express
R10253 T13867 T13883 themeOf C/EBP-β,express
R10254 T13868 T13885 themeOf SerpinB2,mRNA expression
R10264 T13885 T13884 themeOf mRNA expression,attenuated

test3

Id Subject Object Predicate Lexical cue
T13938 115-130 Transcription denotes mRNA expression
T13937 106-114 Protein denotes SerpinB2
T13936 84-94 Negative_regulation denotes attenuated
T13935 76-83 Protein denotes C/EBP-β
T13934 65-72 Negative_regulation denotes absence
T13933 48-56 Protein denotes SerpinB2
T13932 15-22 Gene_expression denotes express
T13909 106-114 Protein denotes SerpinB2
T13908 76-83 Protein denotes C/EBP-β
T13907 48-56 Protein denotes SerpinB2
R10280 T13933 T13932 themeOf SerpinB2,express
R10281 T13937 T13938 themeOf SerpinB2,mRNA expression
R10282 T13938 T13936 themeOf mRNA expression,attenuated