PMC:3589482 / 28640-29544
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24494 | 903-904 | . | denotes | . |
| T24493 | 894-903 | NN | denotes | arrowhead |
| T24492 | 891-893 | DT | denotes | an |
| T24491 | 886-890 | IN | denotes | with |
| T24490 | 876-885 | VBN | denotes | indicated |
| T24489 | 873-875 | VBZ | denotes | is |
| T24488 | 865-872 | NN | denotes | complex |
| T24487 | 851-864 | JJ | denotes | LPS-inducible |
| T24486 | 847-850 | DT | denotes | The |
| T24485 | 845-846 | . | denotes | . |
| T24484 | 837-845 | NN | denotes | antibody |
| T24483 | 831-836 | NNP | denotes | C/EBP |
| T24482 | 822-830 | JJ | denotes | specific |
| T24481 | 812-821 | VBN | denotes | indicated |
| T24480 | 808-811 | DT | denotes | the |
| T24479 | 803-807 | IN | denotes | with |
| T24478 | 789-802 | NN | denotes | preincubation |
| T24477 | 783-788 | IN | denotes | after |
| T24476 | 780-782 | IN | denotes | by |
| T24475 | 774-779 | NN | denotes | probe |
| T24474 | 770-773 | CD | denotes | 185 |
| T24473 | 769-770 | NN | denotes | − |
| T24472 | 768-769 | CD | denotes | / |
| T24471 | 765-768 | CD | denotes | 212 |
| T24470 | 764-765 | NN | denotes | − |
| T24469 | 760-763 | DT | denotes | the |
| T24468 | 755-759 | IN | denotes | with |
| T24467 | 745-754 | VBN | denotes | performed |
| T24466 | 740-744 | VBD | denotes | were |
| T24465 | 733-739 | NNS | denotes | assays |
| T24464 | 722-732 | NNP | denotes | Supershift |
| T24463 | 720-721 | -RRB- | denotes | ) |
| T24462 | 719-720 | NNP | denotes | C |
| T24461 | 718-719 | -LRB- | denotes | ( |
| T24460 | 716-717 | . | denotes | . |
| T24459 | 707-716 | NNS | denotes | complexes |
| T24458 | 695-706 | JJ | denotes | DNA-protein |
| T24452 | 658-659 | -RRB- | denotes | ) |
| T24451 | 657-658 | NNP | denotes | A |
| T24450 | 656-657 | -LRB- | denotes | ( |
| T24449 | 653-655 | IN | denotes | in |
| T24448 | 643-652 | VBN | denotes | described |
| T24447 | 626-642 | NNS | denotes | oligonucleotides |
| T24446 | 617-625 | VBD | denotes | stranded |
| T24445 | 610-616 | JJ | denotes | double |
| T24444 | 606-609 | DT | denotes | the |
| T24443 | 603-605 | IN | denotes | of |
| T24442 | 598-602 | DT | denotes | each |
| T24441 | 595-597 | IN | denotes | of |
| T24440 | 588-594 | NN | denotes | excess |
| T24439 | 582-587 | NN | denotes | molar |
| T24438 | 573-581 | JJ | denotes | 100-fold |
| T24437 | 571-572 | DT | denotes | a |
| T24436 | 567-570 | CC | denotes | and |
| T24435 | 561-566 | NN | denotes | probe |
| T24434 | 557-560 | CD | denotes | 185 |
| T24433 | 556-557 | NN | denotes | − |
| T24432 | 555-556 | CD | denotes | / |
| T24431 | 552-555 | CD | denotes | 212 |
| T24430 | 551-552 | NN | denotes | − |
| T24429 | 542-550 | NN | denotes | promoter |
| T24428 | 533-541 | NNP | denotes | SerpinB2 |
| T24427 | 526-532 | NN | denotes | murine |
| T24426 | 512-525 | VBN | denotes | radiolabelled |
| T24425 | 508-511 | DT | denotes | the |
| T24424 | 503-507 | IN | denotes | with |
| T24423 | 493-502 | VBN | denotes | performed |
| T24422 | 487-492 | NNS | denotes | EMSAs |
| T24421 | 475-486 | NN | denotes | competition |
| T24420 | 470-474 | NNP | denotes | Cold |
| T24419 | 468-469 | -RRB- | denotes | ) |
| T24418 | 467-468 | NNP | denotes | B |
| T24417 | 466-467 | -LRB- | denotes | ( |
| T24416 | 464-465 | . | denotes | . |
| T24415 | 459-464 | NN | denotes | probe |
| T24414 | 457-458 | -RRB- | denotes | ) |
| T24413 | 452-457 | NNP | denotes | C/EBP |
| T24412 | 444-451 | NN | denotes | albumin |
| T24411 | 440-443 | NN | denotes | rat |
| T24410 | 439-440 | -LRB- | denotes | ( |
| T24409 | 433-438 | NNP | denotes | C/EBP |
| T24408 | 426-432 | NN | denotes | region |
| T24407 | 422-425 | NNP | denotes | DEI |
| T24406 | 413-421 | NN | denotes | promoter |
| T24405 | 405-412 | NN | denotes | albumin |
| T24404 | 401-404 | NN | denotes | rat |
| T24403 | 397-400 | DT | denotes | the |
| T24402 | 392-396 | IN | denotes | with |
| T24401 | 389-391 | CC | denotes | or |
| T24400 | 384-388 | NN | denotes | site |
| T24399 | 378-383 | NNP | denotes | C/EBP |
| T24398 | 376-377 | -RRB- | denotes | ) |
| T24397 | 371-376 | NNP | denotes | C/EBP |
| T24396 | 364-370 | JJ | denotes | mutant |
| T24395 | 363-364 | -LRB- | denotes | ( |
| T24394 | 355-362 | VBN | denotes | mutated |
| T24393 | 352-354 | CC | denotes | or |
| T24392 | 350-351 | -RRB- | denotes | ) |
| T24391 | 345-350 | NNP | denotes | C/EBP |
| T24390 | 336-344 | CD | denotes | SerpinB2 |
| T24389 | 335-336 | -LRB- | denotes | ( |
| T24388 | 328-334 | JJ | denotes | intact |
| T24387 | 325-327 | DT | denotes | an |
| T24386 | 314-324 | VBG | denotes | containing |
| T24385 | 308-313 | NN | denotes | probe |
| T24384 | 304-307 | CD | denotes | 185 |
| T24383 | 303-304 | NN | denotes | − |
| T24382 | 302-303 | CD | denotes | / |
| T24381 | 299-302 | CD | denotes | 212 |
| T24380 | 298-299 | NN | denotes | − |
| T24379 | 289-297 | NN | denotes | promoter |
| T24378 | 280-288 | NNP | denotes | SerpinB2 |
| T24377 | 273-279 | NN | denotes | murine |
| T24376 | 269-272 | DT | denotes | the |
| T24375 | 262-268 | CC | denotes | either |
| T24374 | 257-261 | IN | denotes | with |
| T24373 | 247-256 | VBN | denotes | incubated |
| T24372 | 241-246 | NNS | denotes | cells |
| T24371 | 235-240 | CD | denotes | 264.7 |
| T24370 | 231-234 | NNP | denotes | RAW |
| T24369 | 229-230 | -RRB- | denotes | ) |
| T24368 | 226-229 | NNP | denotes | LPS |
| T24367 | 225-226 | -LRB- | denotes | ( |
| T24366 | 217-224 | VBD | denotes | treated |
| T24365 | 213-216 | NNP | denotes | LPS |
| T24364 | 210-212 | NN | denotes | hr |
| T24363 | 207-209 | CD | denotes | 10 |
| T24362 | 203-206 | CC | denotes | and |
| T24361 | 201-202 | -RRB- | denotes | ) |
| T24360 | 199-201 | NNP | denotes | UN |
| T24359 | 198-199 | -LRB- | denotes | ( |
| T24358 | 188-197 | JJ | denotes | untreated |
| T24357 | 183-187 | IN | denotes | from |
| T24356 | 174-182 | NNS | denotes | extracts |
| T24355 | 166-173 | JJ | denotes | nuclear |
| T24354 | 161-165 | IN | denotes | with |
| T24353 | 156-160 | NNP | denotes | EMSA |
| T24352 | 154-155 | -RRB- | denotes | ) |
| T24351 | 153-154 | NNP | denotes | A |
| T24350 | 152-153 | -LRB- | denotes | ( |
| T24349 | 150-151 | . | denotes | . |
| T24348 | 149-150 | NN | denotes | β |
| T24347 | 148-149 | : | denotes | - |
| T24346 | 143-148 | NNP | denotes | C/EBP |
| T24345 | 134-142 | VBZ | denotes | contains |
| T24344 | 129-133 | NN | denotes | site |
| T24343 | 123-128 | NNP | denotes | C/EBP |
| T24342 | 114-122 | NN | denotes | promoter |
| T24341 | 105-113 | JJ | denotes | proximal |
| T24340 | 96-104 | NNP | denotes | SerpinB2 |
| T24339 | 89-95 | NN | denotes | murine |
| T24338 | 85-88 | DT | denotes | the |
| T24337 | 77-84 | JJ | denotes | binding |
| T24336 | 70-76 | NN | denotes | factor |
| T24335 | 62-69 | JJ | denotes | nuclear |
| T24334 | 48-61 | JJ | denotes | LPS-inducible |
| T24333 | 44-47 | DT | denotes | The |
| T24457 | 691-694 | DT | denotes | the |
| T24456 | 688-690 | IN | denotes | of |
| T24455 | 676-687 | NN | denotes | specificity |
| T24454 | 672-675 | DT | denotes | the |
| T24453 | 660-671 | VBP | denotes | demonstrate |
| R17429 | T24333 | T24336 | det | The,factor |
| R17430 | T24334 | T24336 | amod | LPS-inducible,factor |
| R17431 | T24335 | T24336 | amod | nuclear,factor |
| R17432 | T24336 | T24337 | nsubj | factor,binding |
| R17433 | T24337 | T24337 | ROOT | binding,binding |
| R17434 | T24338 | T24344 | det | the,site |
| R17435 | T24339 | T24344 | amod | murine,site |
| R17436 | T24340 | T24342 | nmod | SerpinB2,promoter |
| R17437 | T24341 | T24342 | amod | proximal,promoter |
| R17438 | T24342 | T24344 | compound | promoter,site |
| R17439 | T24343 | T24344 | compound | C/EBP,site |
| R17440 | T24344 | T24345 | nsubj | site,contains |
| R17441 | T24345 | T24337 | ccomp | contains,binding |
| R17442 | T24346 | T24348 | compound | C/EBP,β |
| R17443 | T24347 | T24348 | punct | -,β |
| R17444 | T24348 | T24345 | dobj | β,contains |
| R17445 | T24349 | T24337 | punct | .,binding |
| R17446 | T24350 | T24353 | punct | (,EMSA |
| R17447 | T24351 | T24353 | nmod | A,EMSA |
| R17448 | T24352 | T24353 | punct | ),EMSA |
| R17449 | T24353 | T24366 | nsubj | EMSA,treated |
| R17450 | T24354 | T24353 | prep | with,EMSA |
| R17451 | T24355 | T24356 | amod | nuclear,extracts |
| R17452 | T24356 | T24354 | pobj | extracts,with |
| R17453 | T24357 | T24356 | prep | from,extracts |
| R17454 | T24358 | T24360 | amod | untreated,UN |
| R17455 | T24359 | T24360 | punct | (,UN |
| R17456 | T24360 | T24357 | pobj | UN,from |
| R17457 | T24361 | T24360 | punct | ),UN |
| R17458 | T24362 | T24360 | cc | and,UN |
| R17459 | T24363 | T24365 | nummod | 10,LPS |
| R17460 | T24364 | T24365 | compound | hr,LPS |
| R17461 | T24365 | T24360 | conj | LPS,UN |
| R17462 | T24366 | T24366 | ROOT | treated,treated |
| R17463 | T24367 | T24370 | punct | (,RAW |
| R17464 | T24368 | T24370 | nmod | LPS,RAW |
| R17465 | T24369 | T24370 | punct | ),RAW |
| R17466 | T24370 | T24372 | nmod | RAW,cells |
| R17467 | T24371 | T24370 | nummod | 264.7,RAW |
| R17468 | T24372 | T24366 | dobj | cells,treated |
| R17469 | T24373 | T24372 | acl | incubated,cells |
| R17470 | T24374 | T24373 | prep | with,incubated |
| R17471 | T24375 | T24385 | preconj | either,probe |
| R17472 | T24376 | T24385 | det | the,probe |
| R17473 | T24377 | T24385 | nmod | murine,probe |
| R17474 | T24378 | T24379 | compound | SerpinB2,promoter |
| R17475 | T24379 | T24385 | nmod | promoter,probe |
| R17476 | T24380 | T24385 | nmod | −,probe |
| R17477 | T24381 | T24385 | nummod | 212,probe |
| R17478 | T24382 | T24385 | nummod | /,probe |
| R17479 | T24383 | T24385 | nmod | −,probe |
| R17480 | T24384 | T24385 | nummod | 185,probe |
| R17481 | T24385 | T24374 | pobj | probe,with |
| R17482 | T24386 | T24385 | acl | containing,probe |
| R17483 | T24387 | T24400 | det | an,site |
| R17484 | T24388 | T24400 | amod | intact,site |
| R17485 | T24389 | T24391 | punct | (,C/EBP |
| R17486 | T24390 | T24391 | nummod | SerpinB2,C/EBP |
| R17487 | T24391 | T24388 | appos | C/EBP,intact |
| R17488 | T24392 | T24391 | punct | ),C/EBP |
| R17489 | T24393 | T24388 | cc | or,intact |
| R17490 | T24394 | T24388 | conj | mutated,intact |
| R17491 | T24395 | T24397 | punct | (,C/EBP |
| R17492 | T24396 | T24397 | amod | mutant,C/EBP |
| R17493 | T24397 | T24400 | meta | C/EBP,site |
| R17494 | T24398 | T24397 | punct | ),C/EBP |
| R17495 | T24399 | T24400 | compound | C/EBP,site |
| R17496 | T24400 | T24386 | dobj | site,containing |
| R17497 | T24401 | T24374 | cc | or,with |
| R17498 | T24402 | T24374 | conj | with,with |
| R17499 | T24403 | T24404 | det | the,rat |
| R17500 | T24404 | T24415 | nsubj | rat,probe |
| R17501 | T24405 | T24409 | compound | albumin,C/EBP |
| R17502 | T24406 | T24409 | compound | promoter,C/EBP |
| R17503 | T24407 | T24408 | compound | DEI,region |
| R17504 | T24408 | T24409 | compound | region,C/EBP |
| R17505 | T24409 | T24415 | punct | C/EBP,probe |
| R17506 | T24410 | T24412 | punct | (,albumin |
| R17507 | T24411 | T24412 | compound | rat,albumin |
| R17508 | T24412 | T24409 | parataxis | albumin,C/EBP |
| R17509 | T24413 | T24415 | compound | C/EBP,probe |
| R17510 | T24414 | T24415 | punct | ),probe |
| R17511 | T24415 | T24402 | pobj | probe,with |
| R17512 | T24416 | T24366 | punct | .,treated |
| R17513 | T24417 | T24417 | ROOT | (,( |
| R17514 | T24418 | T24417 | dep | B,( |
| R17515 | T24419 | T24418 | punct | ),B |
| R17516 | T24420 | T24422 | compound | Cold,EMSAs |
| R17517 | T24421 | T24422 | compound | competition,EMSAs |
| R17518 | T24422 | T24448 | nsubj | EMSAs,described |
| R17519 | T24423 | T24422 | acl | performed,EMSAs |
| R17520 | T24424 | T24423 | prep | with,performed |
| R17521 | T24425 | T24447 | det | the,oligonucleotides |
| R17522 | T24426 | T24427 | amod | radiolabelled,murine |
| R17523 | T24427 | T24447 | nmod | murine,oligonucleotides |
| R17524 | T24428 | T24429 | compound | SerpinB2,promoter |
| R17525 | T24429 | T24447 | nmod | promoter,oligonucleotides |
| R17526 | T24430 | T24447 | nmod | −,oligonucleotides |
| R17527 | T24431 | T24447 | nummod | 212,oligonucleotides |
| R17528 | T24432 | T24447 | nummod | /,oligonucleotides |
| R17529 | T24433 | T24446 | npadvmod | −,stranded |
| R17530 | T24434 | T24435 | nummod | 185,probe |
| R17531 | T24435 | T24433 | appos | probe,− |
| R17532 | T24436 | T24435 | cc | and,probe |
| R17533 | T24437 | T24440 | det | a,excess |
| R17534 | T24438 | T24440 | amod | 100-fold,excess |
| R17535 | T24439 | T24440 | compound | molar,excess |
| R17536 | T24440 | T24435 | conj | excess,probe |
| R17537 | T24441 | T24440 | prep | of,excess |
| R17538 | T24442 | T24441 | pobj | each,of |
| R17539 | T24443 | T24442 | prep | of,each |
| R17540 | T24444 | T24445 | det | the,double |
| R17541 | T24445 | T24443 | pobj | double,of |
| R17542 | T24446 | T24447 | amod | stranded,oligonucleotides |
| R17543 | T24447 | T24448 | nsubj | oligonucleotides,described |
| R17544 | T24448 | T24448 | ROOT | described,described |
| R17545 | T24449 | T24448 | prep | in,described |
| R17546 | T24450 | T24451 | punct | (,A |
| R17547 | T24451 | T24449 | pobj | A,in |
| R17548 | T24452 | T24448 | punct | ),described |
| R17549 | T24453 | T24453 | ROOT | demonstrate,demonstrate |
| R17550 | T24454 | T24455 | det | the,specificity |
| R17551 | T24455 | T24453 | dobj | specificity,demonstrate |
| R17552 | T24456 | T24455 | prep | of,specificity |
| R17553 | T24457 | T24459 | det | the,complexes |
| R17554 | T24458 | T24459 | amod | DNA-protein,complexes |
| R17555 | T24459 | T24456 | pobj | complexes,of |
| R17556 | T24460 | T24453 | punct | .,demonstrate |
| R17557 | T24461 | T24467 | punct | (,performed |
| R17558 | T24462 | T24465 | nmod | C,assays |
| R17559 | T24463 | T24462 | punct | ),C |
| R17560 | T24464 | T24465 | compound | Supershift,assays |
| R17561 | T24465 | T24467 | nsubjpass | assays,performed |
| R17562 | T24466 | T24467 | auxpass | were,performed |
| R17563 | T24467 | T24467 | ROOT | performed,performed |
| R17564 | T24468 | T24467 | prep | with,performed |
| R17565 | T24469 | T24470 | det | the,− |
| R17566 | T24470 | T24468 | pobj | −,with |
| R17567 | T24471 | T24473 | nummod | 212,− |
| R17568 | T24472 | T24473 | nummod | /,− |
| R17569 | T24473 | T24470 | appos | −,− |
| R17570 | T24474 | T24475 | nummod | 185,probe |
| R17571 | T24475 | T24473 | appos | probe,− |
| R17572 | T24476 | T24475 | prep | by,probe |
| R17573 | T24477 | T24475 | prep | after,probe |
| R17574 | T24478 | T24477 | pobj | preincubation,after |
| R17575 | T24479 | T24478 | prep | with,preincubation |
| R17576 | T24480 | T24484 | det | the,antibody |
| R17577 | T24481 | T24484 | amod | indicated,antibody |
| R17578 | T24482 | T24484 | amod | specific,antibody |
| R17579 | T24483 | T24484 | compound | C/EBP,antibody |
| R17580 | T24484 | T24479 | pobj | antibody,with |
| R17581 | T24485 | T24473 | punct | .,− |
| R17582 | T24486 | T24488 | det | The,complex |
| R17583 | T24487 | T24488 | amod | LPS-inducible,complex |
| R17584 | T24488 | T24490 | nsubjpass | complex,indicated |
| R17585 | T24489 | T24490 | auxpass | is,indicated |
| R17586 | T24490 | T24490 | ROOT | indicated,indicated |
| R17587 | T24491 | T24490 | prep | with,indicated |
| R17588 | T24492 | T24493 | det | an,arrowhead |
| R17589 | T24493 | T24491 | pobj | arrowhead,with |
| R17590 | T24494 | T24490 | punct | .,indicated |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24222 | 123-128 | NN | denotes | C/EBP |
| T24221 | 114-122 | NN | denotes | promoter |
| T24220 | 105-113 | JJ | denotes | proximal |
| T24219 | 96-104 | NN | denotes | SerpinB2 |
| T24218 | 89-95 | JJ | denotes | murine |
| T24217 | 85-88 | DT | denotes | the |
| T24216 | 77-84 | VB | denotes | binding |
| T24215 | 70-76 | NN | denotes | factor |
| T24214 | 62-69 | JJ | denotes | nuclear |
| T24213 | 48-61 | JJ | denotes | LPS-inducible |
| T24212 | 44-47 | DT | denotes | The |
| T24233 | 894-903 | NN | denotes | arrowhead |
| T24232 | 891-893 | DT | denotes | an |
| T24231 | 886-890 | IN | denotes | with |
| T24230 | 876-885 | VB | denotes | indicated |
| T24229 | 873-875 | VB | denotes | is |
| T24228 | 865-872 | NN | denotes | complex |
| T24227 | 851-864 | JJ | denotes | LPS-inducible |
| T24226 | 847-850 | DT | denotes | The |
| T24225 | 143-150 | NN | denotes | C/EBP-β |
| T24224 | 134-142 | VB | denotes | contains |
| T24223 | 129-133 | NN | denotes | site |
| R17389 | T24215 | T24212 | arg1Of | factor,The |
| R17390 | T24215 | T24213 | arg1Of | factor,LPS-inducible |
| R17391 | T24215 | T24214 | arg1Of | factor,nuclear |
| R17392 | T24215 | T24216 | arg1Of | factor,binding |
| R17393 | T24215 | T24224 | arg1Of | factor,contains |
| R17394 | T24223 | T24216 | arg2Of | site,binding |
| R17395 | T24223 | T24217 | arg1Of | site,the |
| R17396 | T24223 | T24218 | arg1Of | site,murine |
| R17397 | T24223 | T24219 | arg1Of | site,SerpinB2 |
| R17398 | T24223 | T24220 | arg1Of | site,proximal |
| R17399 | T24223 | T24221 | arg1Of | site,promoter |
| R17400 | T24223 | T24222 | arg1Of | site,C/EBP |
| R17401 | T24225 | T24224 | arg2Of | C/EBP-β,contains |
| R17402 | T24228 | T24226 | arg1Of | complex,The |
| R17403 | T24228 | T24227 | arg1Of | complex,LPS-inducible |
| R17404 | T24228 | T24229 | arg1Of | complex,is |
| R17405 | T24228 | T24230 | arg2Of | complex,indicated |
| R17406 | T24230 | T24229 | arg2Of | indicated,is |
| R17407 | T24230 | T24231 | arg1Of | indicated,with |
| R17408 | T24233 | T24231 | arg2Of | arrowhead,with |
| R17409 | T24233 | T24232 | arg1Of | arrowhead,an |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24195 | 533-541 | Protein | denotes | SerpinB2 |
| T24194 | 444-451 | Protein | denotes | albumin |
| T24193 | 405-412 | Protein | denotes | albumin |
| T24192 | 336-344 | Protein | denotes | SerpinB2 |
| T24191 | 280-288 | Protein | denotes | SerpinB2 |
| T24190 | 143-150 | Protein | denotes | C/EBP-β |
| T24189 | 96-104 | Protein | denotes | SerpinB2 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24253 | 143-150 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T24252 | 533-541 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T24251 | 336-344 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T24250 | 280-288 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T24249 | 96-104 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24197 | 837-845 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibody |
| T24196 | 77-84 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24204 | 837-845 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibody |
| T24203 | 837-845 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibody |
| T24202 | 699-716 | http://purl.obolibrary.org/obo/GO_0043234 | denotes | protein complexes |
| T24201 | 695-716 | http://purl.obolibrary.org/obo/GO_0097522 | denotes | DNA-protein complexes |
| T24200 | 695-716 | http://purl.obolibrary.org/obo/GO_0032993 | denotes | DNA-protein complexes |
| T24199 | 695-716 | http://purl.obolibrary.org/obo/GO_0001114 | denotes | DNA-protein complexes |
| T24198 | 241-246 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24178 | 847-904 | Sentence | denotes | The LPS-inducible complex is indicated with an arrowhead. |
| T24177 | 152-846 | Sentence | denotes | (A) EMSA with nuclear extracts from untreated (UN) and 10 hr LPS treated (LPS) RAW 264.7 cells incubated with either the murine SerpinB2 promoter −212/−185 probe containing an intact (SerpinB2 C/EBP) or mutated (mutant C/EBP) C/EBP site or with the rat albumin promoter DEI region C/EBP (rat albumin C/EBP) probe. (B) Cold competition EMSAs performed with the radiolabelled murine SerpinB2 promoter −212/−185 probe and a 100-fold molar excess of each of the double stranded oligonucleotides described in (A) demonstrate the specificity of the DNA-protein complexes. (C) Supershift assays were performed with the −212/−185 probe by after preincubation with the indicated specific C/EBP antibody. |
| T24176 | 44-151 | Sentence | denotes | The LPS-inducible nuclear factor binding the murine SerpinB2 proximal promoter C/EBP site contains C/EBP-β. |
| T178 | 0-151 | Sentence | denotes | 10.1371/journal.pone.0057855.g005 Figure 5 The LPS-inducible nuclear factor binding the murine SerpinB2 proximal promoter C/EBP site contains C/EBP-β. |
| T179 | 152-846 | Sentence | denotes | (A) EMSA with nuclear extracts from untreated (UN) and 10 hr LPS treated (LPS) RAW 264.7 cells incubated with either the murine SerpinB2 promoter −212/−185 probe containing an intact (SerpinB2 C/EBP) or mutated (mutant C/EBP) C/EBP site or with the rat albumin promoter DEI region C/EBP (rat albumin C/EBP) probe. (B) Cold competition EMSAs performed with the radiolabelled murine SerpinB2 promoter −212/−185 probe and a 100-fold molar excess of each of the double stranded oligonucleotides described in (A) demonstrate the specificity of the DNA-protein complexes. (C) Supershift assays were performed with the −212/−185 probe by after preincubation with the indicated specific C/EBP antibody. |
| T180 | 847-904 | Sentence | denotes | The LPS-inducible complex is indicated with an arrowhead. |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24211 | 533-541 | Protein | denotes | SerpinB2 |
| T24210 | 444-451 | Protein | denotes | albumin |
| T24209 | 405-412 | Protein | denotes | albumin |
| T24208 | 336-344 | Protein | denotes | SerpinB2 |
| T24207 | 280-288 | Protein | denotes | SerpinB2 |
| T24206 | 143-150 | Protein | denotes | C/EBP-β |
| T24205 | 96-104 | Protein | denotes | SerpinB2 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24248 | 77-84 | Binding | denotes | binding |
| T24247 | 533-541 | Protein | denotes | SerpinB2 |
| T24246 | 444-451 | Protein | denotes | albumin |
| T24245 | 405-412 | Protein | denotes | albumin |
| T24244 | 336-344 | Protein | denotes | SerpinB2 |
| T24243 | 280-288 | Protein | denotes | SerpinB2 |
| T24242 | 143-150 | Protein | denotes | C/EBP-β |
| T24241 | 96-104 | Protein | denotes | SerpinB2 |
| R17410 | T24241 | T24248 | themeOf | SerpinB2,binding |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24276 | 77-84 | Binding | denotes | binding |
| T24275 | 533-541 | Protein | denotes | SerpinB2 |
| T24274 | 444-451 | Protein | denotes | albumin |
| T24273 | 405-412 | Protein | denotes | albumin |
| T24272 | 336-344 | Protein | denotes | SerpinB2 |
| T24271 | 280-288 | Protein | denotes | SerpinB2 |
| T24270 | 143-150 | Protein | denotes | C/EBP-β |
| T24269 | 96-104 | Protein | denotes | SerpinB2 |
| R17413 | T24269 | T24276 | themeOf | SerpinB2,binding |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24261 | 77-84 | Binding | denotes | binding |
| T24260 | 533-541 | Protein | denotes | SerpinB2 |
| T24259 | 444-451 | Protein | denotes | albumin |
| T24258 | 405-412 | Protein | denotes | albumin |
| T24257 | 336-344 | Protein | denotes | SerpinB2 |
| T24256 | 280-288 | Protein | denotes | SerpinB2 |
| T24255 | 143-150 | Protein | denotes | C/EBP-β |
| T24254 | 96-104 | Protein | denotes | SerpinB2 |
| R17411 | T24254 | T24261 | themeOf | SerpinB2,binding |
| R17412 | T24255 | T24261 | themeOf | C/EBP-β,binding |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24332 | 336-344 | Protein | denotes | SerpinB2 |
| T24331 | 96-104 | Protein | denotes | SerpinB2 |
| T24330 | 688-716 | Entity | denotes | of the DNA-protein complexes |
| T24329 | 847-872 | Entity | denotes | The LPS-inducible complex |
| T24328 | 378-388 | Entity | denotes | C/EBP site |
| T24327 | 405-412 | Protein | denotes | albumin |
| T24326 | 533-541 | Protein | denotes | SerpinB2 |
| T24325 | 207-224 | Entity | denotes | 10 hr LPS treated |
| T24324 | 617-652 | Entity | denotes | stranded oligonucleotides described |
| T24323 | 336-350 | Protein | denotes | SerpinB2 C/EBP |
| T24322 | 143-150 | Protein | denotes | C/EBP-β |
| T24321 | 831-836 | Protein | denotes | C/EBP |
| T24320 | 444-451 | Protein | denotes | albumin |
| T24319 | 440-457 | Protein | denotes | rat albumin C/EBP |
| T24318 | 378-383 | Protein | denotes | C/EBP |
| T24317 | 822-845 | Protein | denotes | specific C/EBP antibody |
| T24316 | 125-128 | Protein | denotes | EBP |
| T24315 | 397-458 | Entity | denotes | the rat albumin promoter DEI region C/EBP (rat albumin C/EBP) |
| T24314 | 508-566 | Entity | denotes | the radiolabelled murine SerpinB2 promoter −212/−185 probe |
| T24313 | 85-128 | Entity | denotes | the murine SerpinB2 proximal promoter C/EBP |
| T24312 | 397-458 | Protein | denotes | the rat albumin promoter DEI region C/EBP (rat albumin C/EBP) |
| T24311 | 364-376 | Protein | denotes | mutant C/EBP |
| T24310 | 226-229 | Entity | denotes | LPS |
| T24309 | 166-182 | Entity | denotes | nuclear extracts |
| T24308 | 129-133 | Entity | denotes | site |
| T24307 | 422-425 | Protein | denotes | DEI |
| R17428 | T24313 | T24331 | partOf | the murine SerpinB2 proximal promoter C/EBP,SerpinB2 |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24291 | 831-845 | Protein | denotes | C/EBP antibody |
| T24290 | 247-256 | Positive_regulation | denotes | incubated |
| T24289 | 314-324 | Positive_regulation | denotes | containing |
| T24288 | 328-334 | Positive_regulation | denotes | intact |
| T24287 | 247-256 | Positive_regulation | denotes | incubated |
| T24286 | 247-256 | Positive_regulation | denotes | incubated |
| T24285 | 247-256 | Positive_regulation | denotes | incubated |
| T24284 | 440-457 | Protein | denotes | rat albumin C/EBP |
| T24283 | 426-438 | Protein | denotes | region C/EBP |
| T24282 | 401-421 | Protein | denotes | rat albumin promoter |
| T24281 | 378-388 | Protein | denotes | C/EBP site |
| T24280 | 336-350 | Protein | denotes | SerpinB2 C/EBP |
| T24279 | 77-84 | Binding | denotes | binding |
| T24278 | 143-150 | Protein | denotes | C/EBP-β |
| T24277 | 89-133 | Protein | denotes | murine SerpinB2 proximal promoter C/EBP site |
| R17414 | T24277 | T24279 | themeOf | murine SerpinB2 proximal promoter C/EBP site,binding |
| R17415 | T24280 | T24288 | themeOf | SerpinB2 C/EBP,intact |
| R17416 | T24282 | T24285 | themeOf | rat albumin promoter,incubated |
| R17417 | T24283 | T24286 | themeOf | region C/EBP,incubated |
| R17418 | T24284 | T24287 | themeOf | rat albumin C/EBP,incubated |
| R17419 | T24288 | T24289 | themeOf | intact,containing |
| R17420 | T24289 | T24290 | themeOf | containing,incubated |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24160 | 77-84 | Binding | denotes | binding |
| T24159 | 52-61 | Positive_regulation | denotes | inducible |
| T24158 | 533-541 | Protein | denotes | SerpinB2 |
| T24157 | 444-451 | Protein | denotes | albumin |
| T24156 | 405-412 | Protein | denotes | albumin |
| T24155 | 336-344 | Protein | denotes | SerpinB2 |
| T24154 | 280-288 | Protein | denotes | SerpinB2 |
| T24153 | 143-150 | Protein | denotes | C/EBP-β |
| T24152 | 96-104 | Protein | denotes | SerpinB2 |
| R17382 | T24153 | T24160 | themeOf | C/EBP-β,binding |
| R17383 | T24160 | T24159 | themeOf | binding,inducible |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24175 | 533-541 | Protein | denotes | SerpinB2 |
| T24174 | 444-451 | Protein | denotes | albumin |
| T24173 | 405-412 | Protein | denotes | albumin |
| T24172 | 336-344 | Protein | denotes | SerpinB2 |
| T24171 | 280-288 | Protein | denotes | SerpinB2 |
| T24170 | 143-150 | Protein | denotes | C/EBP-β |
| T24169 | 96-104 | Protein | denotes | SerpinB2 |
| T24168 | 77-84 | Binding | denotes | binding |
| T24167 | 533-541 | Protein | denotes | SerpinB2 |
| T24166 | 444-451 | Protein | denotes | albumin |
| T24165 | 405-412 | Protein | denotes | albumin |
| T24164 | 336-344 | Protein | denotes | SerpinB2 |
| T24163 | 280-288 | Protein | denotes | SerpinB2 |
| T24162 | 143-150 | Protein | denotes | C/EBP-β |
| T24161 | 96-104 | Protein | denotes | SerpinB2 |
| R17384 | T24169 | T24168 | themeOf | SerpinB2,binding |
| R17385 | T24170 | T24168 | themeOf | C/EBP-β,binding |