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PMC:3589482 / 27167-29544 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T24494 2376-2377 . denotes .
T24493 2367-2376 NN denotes arrowhead
T24492 2364-2366 DT denotes an
T24491 2359-2363 IN denotes with
T24490 2349-2358 VBN denotes indicated
T24489 2346-2348 VBZ denotes is
T24488 2338-2345 NN denotes complex
T24487 2324-2337 JJ denotes LPS-inducible
T24486 2320-2323 DT denotes The
T24485 2318-2319 . denotes .
T24484 2310-2318 NN denotes antibody
T24483 2304-2309 NNP denotes C/EBP
T24482 2295-2303 JJ denotes specific
T24481 2285-2294 VBN denotes indicated
T24480 2281-2284 DT denotes the
T24479 2276-2280 IN denotes with
T24478 2262-2275 NN denotes preincubation
T24477 2256-2261 IN denotes after
T24476 2253-2255 IN denotes by
T24475 2247-2252 NN denotes probe
T24474 2243-2246 CD denotes 185
T24473 2242-2243 NN denotes −
T24472 2241-2242 CD denotes /
T24471 2238-2241 CD denotes 212
T24470 2237-2238 NN denotes −
T24469 2233-2236 DT denotes the
T24468 2228-2232 IN denotes with
T24467 2218-2227 VBN denotes performed
T24466 2213-2217 VBD denotes were
T24465 2206-2212 NNS denotes assays
T24464 2195-2205 NNP denotes Supershift
T24463 2193-2194 -RRB- denotes )
T24462 2192-2193 NNP denotes C
T24461 2191-2192 -LRB- denotes (
T24460 2189-2190 . denotes .
T24459 2180-2189 NNS denotes complexes
T24458 2168-2179 JJ denotes DNA-protein
T24452 2131-2132 -RRB- denotes )
T24451 2130-2131 NNP denotes A
T24450 2129-2130 -LRB- denotes (
T24449 2126-2128 IN denotes in
T24448 2116-2125 VBN denotes described
T24447 2099-2115 NNS denotes oligonucleotides
T24446 2090-2098 VBD denotes stranded
T24445 2083-2089 JJ denotes double
T24444 2079-2082 DT denotes the
T24443 2076-2078 IN denotes of
T24442 2071-2075 DT denotes each
T24441 2068-2070 IN denotes of
T24440 2061-2067 NN denotes excess
T24439 2055-2060 NN denotes molar
T24438 2046-2054 JJ denotes 100-fold
T24437 2044-2045 DT denotes a
T24436 2040-2043 CC denotes and
T24435 2034-2039 NN denotes probe
T24434 2030-2033 CD denotes 185
T24433 2029-2030 NN denotes −
T24432 2028-2029 CD denotes /
T24431 2025-2028 CD denotes 212
T24430 2024-2025 NN denotes −
T24429 2015-2023 NN denotes promoter
T24428 2006-2014 NNP denotes SerpinB2
T24427 1999-2005 NN denotes murine
T24426 1985-1998 VBN denotes radiolabelled
T24425 1981-1984 DT denotes the
T24424 1976-1980 IN denotes with
T24423 1966-1975 VBN denotes performed
T24422 1960-1965 NNS denotes EMSAs
T24421 1948-1959 NN denotes competition
T24420 1943-1947 NNP denotes Cold
T24419 1941-1942 -RRB- denotes )
T24418 1940-1941 NNP denotes B
T24417 1939-1940 -LRB- denotes (
T24416 1937-1938 . denotes .
T24415 1932-1937 NN denotes probe
T24414 1930-1931 -RRB- denotes )
T24413 1925-1930 NNP denotes C/EBP
T24412 1917-1924 NN denotes albumin
T24411 1913-1916 NN denotes rat
T24410 1912-1913 -LRB- denotes (
T24409 1906-1911 NNP denotes C/EBP
T24408 1899-1905 NN denotes region
T24407 1895-1898 NNP denotes DEI
T24406 1886-1894 NN denotes promoter
T24405 1878-1885 NN denotes albumin
T24404 1874-1877 NN denotes rat
T24403 1870-1873 DT denotes the
T24402 1865-1869 IN denotes with
T24401 1862-1864 CC denotes or
T24400 1857-1861 NN denotes site
T24399 1851-1856 NNP denotes C/EBP
T24398 1849-1850 -RRB- denotes )
T24397 1844-1849 NNP denotes C/EBP
T24396 1837-1843 JJ denotes mutant
T24395 1836-1837 -LRB- denotes (
T24394 1828-1835 VBN denotes mutated
T24393 1825-1827 CC denotes or
T24392 1823-1824 -RRB- denotes )
T24391 1818-1823 NNP denotes C/EBP
T24390 1809-1817 CD denotes SerpinB2
T24389 1808-1809 -LRB- denotes (
T24388 1801-1807 JJ denotes intact
T24387 1798-1800 DT denotes an
T24386 1787-1797 VBG denotes containing
T24385 1781-1786 NN denotes probe
T24384 1777-1780 CD denotes 185
T24383 1776-1777 NN denotes −
T24382 1775-1776 CD denotes /
T24381 1772-1775 CD denotes 212
T24380 1771-1772 NN denotes −
T24379 1762-1770 NN denotes promoter
T24378 1753-1761 NNP denotes SerpinB2
T24377 1746-1752 NN denotes murine
T24376 1742-1745 DT denotes the
T24375 1735-1741 CC denotes either
T24374 1730-1734 IN denotes with
T24373 1720-1729 VBN denotes incubated
T24372 1714-1719 NNS denotes cells
T24371 1708-1713 CD denotes 264.7
T24370 1704-1707 NNP denotes RAW
T24369 1702-1703 -RRB- denotes )
T24368 1699-1702 NNP denotes LPS
T24367 1698-1699 -LRB- denotes (
T24366 1690-1697 VBD denotes treated
T24365 1686-1689 NNP denotes LPS
T24364 1683-1685 NN denotes hr
T24363 1680-1682 CD denotes 10
T24362 1676-1679 CC denotes and
T24361 1674-1675 -RRB- denotes )
T24360 1672-1674 NNP denotes UN
T24359 1671-1672 -LRB- denotes (
T24358 1661-1670 JJ denotes untreated
T24357 1656-1660 IN denotes from
T24356 1647-1655 NNS denotes extracts
T24355 1639-1646 JJ denotes nuclear
T24354 1634-1638 IN denotes with
T24353 1629-1633 NNP denotes EMSA
T24352 1627-1628 -RRB- denotes )
T24351 1626-1627 NNP denotes A
T24350 1625-1626 -LRB- denotes (
T24349 1623-1624 . denotes .
T24348 1622-1623 NN denotes β
T24347 1621-1622 : denotes -
T24346 1616-1621 NNP denotes C/EBP
T24345 1607-1615 VBZ denotes contains
T24344 1602-1606 NN denotes site
T24343 1596-1601 NNP denotes C/EBP
T24342 1587-1595 NN denotes promoter
T24341 1578-1586 JJ denotes proximal
T24340 1569-1577 NNP denotes SerpinB2
T24339 1562-1568 NN denotes murine
T24338 1558-1561 DT denotes the
T24337 1550-1557 JJ denotes binding
T24336 1543-1549 NN denotes factor
T24335 1535-1542 JJ denotes nuclear
T24334 1521-1534 JJ denotes LPS-inducible
T24333 1517-1520 DT denotes The
T24457 2164-2167 DT denotes the
T24456 2161-2163 IN denotes of
T24455 2149-2160 NN denotes specificity
T24454 2145-2148 DT denotes the
T24453 2133-2144 VBP denotes demonstrate
T13080 1471-1472 . denotes .
T13079 1464-1471 NNS denotes factors
T13078 1450-1463 NN denotes transcription
T13077 1447-1449 IN denotes of
T13076 1440-1446 NN denotes family
T13075 1434-1439 NNP denotes C/EBP
T13074 1430-1433 DT denotes the
T13073 1427-1429 IN denotes of
T13072 1420-1426 NN denotes member
T13071 1418-1419 DT denotes a
T12855 341-347 NNS denotes probes
T12854 325-340 NN denotes oligonucleotide
T12853 316-324 VBN denotes stranded
T12852 309-315 JJ denotes double
T12851 299-308 JJ denotes different
T12850 293-298 CD denotes Three
T12849 291-292 . denotes .
T12848 280-291 NNS denotes macrophages
T12847 274-279 CD denotes 264.7
T12846 270-273 NNP denotes RAW
T12845 258-269 JJ denotes LPS-treated
T12844 254-257 CC denotes and
T12843 244-253 JJ denotes untreated
T12842 239-243 IN denotes from
T12841 230-238 NNS denotes extracts
T12840 222-229 JJ denotes nuclear
T12839 216-221 VBG denotes using
T12838 214-215 -RRB- denotes )
T12837 210-214 NNP denotes EMSA
T12836 209-210 -LRB- denotes (
T12835 203-208 NN denotes assay
T12834 197-202 NN denotes shift
T12833 188-196 NN denotes mobility
T12832 172-187 JJ denotes electrophoretic
T12831 169-171 IN denotes by
T12830 156-168 VBN denotes investigated
T12829 152-155 VBD denotes was
T12828 150-151 -RRB- denotes )
T12827 147-150 CD denotes 192
T12826 146-147 NN denotes −
T12825 145-146 CD denotes /
T12824 142-145 CD denotes 203
T12823 141-142 FW denotes −
T12822 140-141 -LRB- denotes (
T12821 132-139 NN denotes element
T12820 126-131 NNP denotes C/EBP
T12819 117-125 JJ denotes putative
T12818 113-116 DT denotes the
T12817 110-112 TO denotes to
T12816 102-109 JJ denotes binding
T12815 95-101 NN denotes factor
T12814 87-94 NNP denotes Nuclear
T12813 75-86 NNP denotes Macrophages
T12812 69-74 CD denotes 264.7
T12811 65-68 NNP denotes RAW
T12810 60-64 IN denotes from
T12809 53-59 NNP denotes Factor
T12808 45-52 NNP denotes Nuclear
T12807 33-44 JJ denotes LPS-induced
T12806 30-32 DT denotes an
T12805 27-29 IN denotes by
T12804 21-26 VBN denotes Bound
T12803 18-20 VBZ denotes is
T12802 10-17 NNP denotes Element
T12801 4-9 NNP denotes C/EBP
T12800 0-3 DT denotes The
T13070 1410-1417 VB denotes contain
T13069 1407-1409 TO denotes to
T13068 1400-1406 JJ denotes likely
T13067 1397-1399 VBZ denotes is
T13066 1392-1396 WDT denotes that
T13065 1384-1391 NN denotes complex
T13064 1370-1383 JJ denotes LPS-inducible
T13063 1368-1369 DT denotes a
T13062 1362-1367 VBZ denotes binds
T13061 1358-1361 CD denotes 192
T13060 1357-1358 NN denotes −
T13059 1356-1357 NN denotes /
T13058 1353-1356 CD denotes 203
T13057 1352-1353 CD denotes −
T13056 1349-1351 IN denotes at
T13055 1344-1348 NN denotes site
T13054 1338-1343 NNP denotes C/EBP
T13053 1329-1337 NNP denotes SerpinB2
T13052 1320-1328 JJ denotes putative
T13051 1316-1319 DT denotes the
T13050 1311-1315 IN denotes that
T13049 1302-1310 VBP denotes indicate
T13048 1297-1301 NNS denotes data
T13047 1291-1296 DT denotes these
T13046 1282-1290 RB denotes Together
T13045 1280-1281 . denotes .
T13044 1279-1280 -RRB- denotes )
T13043 1278-1279 CD denotes 7
T13042 1274-1277 CC denotes and
T13041 1272-1273 CD denotes 6
T13040 1266-1271 NNS denotes lanes
T13039 1264-1265 , denotes ,
T13038 1262-1264 NNP denotes 5B
T13037 1257-1261 NNP denotes Fig.
T13036 1256-1257 -LRB- denotes (
T13035 1240-1255 NN denotes oligonucleotide
T13034 1232-1239 VBN denotes mutated
T13033 1228-1231 DT denotes the
T13032 1225-1227 IN denotes by
T13031 1221-1224 RB denotes not
T13030 1217-1220 CC denotes but
T13029 1215-1216 , denotes ,
T13028 1214-1215 -RRB- denotes )
T13027 1213-1214 CD denotes 9
T13026 1209-1212 CC denotes and
T13025 1207-1208 CD denotes 8
T13024 1201-1206 NNS denotes lanes
T13023 1199-1200 , denotes ,
T13022 1197-1199 NNP denotes 5B
T13021 1192-1196 NNP denotes Fig.
T13020 1191-1192 -LRB- denotes (
T13019 1182-1190 NN denotes promoter
T13018 1174-1181 NN denotes albumin
T13017 1170-1173 NN denotes rat
T13016 1166-1169 DT denotes the
T13015 1161-1165 IN denotes from
T13014 1156-1160 NN denotes site
T13013 1148-1155 JJ denotes binding
T13012 1142-1147 NNP denotes C/EBP
T13011 1136-1141 VBN denotes known
T13010 1134-1135 DT denotes a
T13009 1131-1133 IN denotes of
T13008 1122-1130 NN denotes sequence
T13007 1118-1121 DT denotes the
T13006 1115-1117 CC denotes or
T13005 1113-1114 -RRB- denotes )
T13004 1112-1113 CD denotes 5
T13003 1108-1111 CC denotes and
T13002 1106-1107 CD denotes 4
T13001 1100-1105 NNS denotes lanes
T13000 1098-1099 , denotes ,
T12999 1096-1098 NNP denotes 5B
T12998 1091-1095 NNP denotes Fig.
T12997 1090-1091 -LRB- denotes (
T12996 1081-1089 NN denotes sequence
T12995 1076-1080 JJ denotes same
T12994 1072-1075 DT denotes the
T12993 1065-1071 CC denotes either
T12992 1056-1064 VBG denotes carrying
T12991 1054-1055 , denotes ,
T12990 1039-1054 NN denotes oligonucleotide
T12989 1023-1038 JJ denotes double-stranded
T12988 1013-1022 JJ denotes unlabeled
T12987 1010-1012 IN denotes of
T12986 1003-1009 NN denotes excess
T12985 1000-1002 DT denotes an
T12984 997-999 IN denotes by
T12983 987-996 VBN denotes abolished
T12982 984-986 VB denotes be
T12981 978-983 MD denotes could
T12980 974-977 CC denotes and
T12979 968-973 NN denotes probe
T12978 952-967 NN denotes oligonucleotide
T12977 946-951 NNP denotes C/EBP
T12976 939-945 JJ denotes mutant
T12975 935-938 DT denotes the
T12974 929-934 VBG denotes using
T12973 920-928 VBN denotes detected
T12972 916-919 RB denotes not
T12971 912-915 VBD denotes was
T12970 904-911 NN denotes complex
T12969 890-903 JJ denotes LPS-inducible
T12968 886-889 DT denotes The
T12967 884-885 . denotes .
T12966 881-884 NNP denotes LPS
T12965 878-880 IN denotes by
T12964 870-877 VBN denotes induced
T12963 866-869 VBD denotes was
T12962 858-865 NN denotes complex
T12961 856-857 -RRB- denotes )
T12960 847-856 NN denotes migrating
T12959 839-846 JJS denotes slowest
T12958 838-839 -LRB- denotes (
T12957 828-837 NN denotes uppermost
T12956 824-827 DT denotes the
T12955 818-823 IN denotes while
T12954 816-817 -RRB- denotes )
T12953 814-816 NNP denotes 5A
T12952 809-813 NNP denotes Fig.
T12951 808-809 -LRB- denotes (
T12950 804-807 NNP denotes DNA
T12949 795-803 VBD denotes stranded
T12948 788-794 JJ denotes single
T12947 783-787 IN denotes with
T12946 773-782 NNS denotes complexes
T12945 763-772 VBP denotes represent
T12944 761-762 -RRB- denotes )
T12943 758-761 NNP denotes III
T12942 756-757 , denotes ,
T12941 754-756 NNP denotes II
T12940 752-753 , denotes ,
T12939 751-752 PRP denotes I
T12938 750-751 -LRB- denotes (
T12937 744-749 NNS denotes bands
T12936 738-743 DT denotes these
T12935 735-737 IN denotes of
T12934 729-734 CD denotes Three
T12933 727-728 . denotes .
T12932 726-727 -RRB- denotes )
T12893 511-514 NNP denotes EBP
T12892 510-511 NN denotes /
T12891 499-510 NN denotes pGLmP-539mC
T12890 496-498 IN denotes in
T12889 493-495 IN denotes as
T12888 484-492 NN denotes mutation
T12887 479-483 JJ denotes same
T12886 475-478 DT denotes the
T12885 464-474 VBG denotes containing
T12884 456-463 NN denotes element
T12883 447-455 NNP denotes SerpinB2
T12882 440-446 JJ denotes mutant
T12881 438-439 DT denotes a
T12880 436-437 -RRB- denotes )
T12879 435-436 LS denotes 2
T12878 434-435 -LRB- denotes (
T12877 432-433 , denotes ,
T12876 431-432 -RRB- denotes )
T12875 428-431 CD denotes 192
T12874 427-428 NN denotes −
T12873 426-427 CD denotes /
T12872 423-426 CD denotes 203
T12871 422-423 FW denotes −
T12870 421-422 -LRB- denotes (
T12869 413-420 NN denotes element
T12868 407-412 NNP denotes C/EBP
T12867 398-406 NNP denotes SerpinB2
T12866 389-397 JJ denotes putative
T12865 385-388 DT denotes the
T12864 383-384 -RRB- denotes )
T12863 382-383 CD denotes 1
T12862 381-382 -LRB- denotes (
T12861 368-380 VBG denotes representing
T12860 366-367 , denotes ,
T12859 362-366 NNP denotes EMSA
T12858 358-361 IN denotes for
T12857 353-357 VBN denotes used
T12856 348-352 VBD denotes were
T12931 724-726 NNP denotes 5A
T12930 719-723 NNP denotes Fig.
T12929 718-719 -LRB- denotes (
T12928 709-717 VBN denotes detected
T12927 704-708 VBD denotes were
T12926 694-703 NNS denotes complexes
T12925 686-693 NN denotes protein
T12924 674-685 JJ denotes DNA-nuclear
T12923 661-673 VBG denotes representing
T12922 659-660 , denotes ,
T12921 649-659 NNS denotes mobilities
T12920 639-648 JJ denotes different
T12919 636-638 IN denotes of
T12918 630-635 NNS denotes bands
T12917 625-629 CD denotes Four
T12898 523-526 DT denotes the
T12897 521-522 -RRB- denotes )
T12896 520-521 LS denotes 3
T12895 519-520 -LRB- denotes (
T12894 515-518 CC denotes and
T12916 623-624 . denotes .
T12915 619-623 NN denotes site
T12914 611-618 JJ denotes binding
T12913 605-610 NNP denotes C/EBP
T12912 596-604 NN denotes affinity
T12911 591-595 JJ denotes high
T12910 589-590 DT denotes a
T12909 578-588 VBG denotes containing
T12908 571-577 NN denotes region
T12907 569-570 -RRB- denotes )
T12906 566-569 NNP denotes DEI
T12905 565-566 -LRB- denotes (
T12904 563-564 CD denotes 1
T12903 555-562 NN denotes element
T12902 548-554 JJ denotes distal
T12901 539-547 NN denotes promoter
T12900 531-538 NN denotes albumin
T12899 527-530 NN denotes rat
R9464 T12800 T12802 det The,Element
R9465 T12801 T12802 compound C/EBP,Element
R9466 T12802 T12804 nsubjpass Element,Bound
R9467 T12803 T12804 auxpass is,Bound
R9468 T12804 T12804 ROOT Bound,Bound
R9469 T12805 T12804 agent by,Bound
R9470 T12806 T12809 det an,Factor
R9471 T12807 T12809 compound LPS-induced,Factor
R9472 T12808 T12809 compound Nuclear,Factor
R9473 T12809 T12805 pobj Factor,by
R9474 T12810 T12809 prep from,Factor
R9475 T12811 T12815 nmod RAW,factor
R9476 T12812 T12811 nummod 264.7,RAW
R9477 T12813 T12815 compound Macrophages,factor
R9478 T12814 T12815 compound Nuclear,factor
R9479 T12815 T12810 pobj factor,from
R9480 T12816 T12804 oprd binding,Bound
R9481 T12817 T12816 prep to,binding
R9482 T12818 T12821 det the,element
R9483 T12819 T12821 amod putative,element
R9484 T12820 T12821 compound C/EBP,element
R9485 T12821 T12817 pobj element,to
R9486 T12822 T12830 punct (,investigated
R9487 T12823 T12830 dep −,investigated
R9488 T12824 T12830 nsubjpass 203,investigated
R9489 T12825 T12830 nsubjpass /,investigated
R9490 T12826 T12830 nsubjpass −,investigated
R9491 T12827 T12826 nummod 192,−
R9492 T12828 T12826 punct ),−
R9493 T12829 T12830 auxpass was,investigated
R9494 T12830 T12821 acl investigated,element
R9495 T12831 T12830 agent by,investigated
R9496 T12832 T12835 amod electrophoretic,assay
R9497 T12833 T12834 compound mobility,shift
R9498 T12834 T12835 compound shift,assay
R9499 T12835 T12831 pobj assay,by
R9500 T12836 T12835 punct (,assay
R9501 T12837 T12839 nmod EMSA,using
R9502 T12838 T12839 punct ),using
R9503 T12839 T12835 parataxis using,assay
R9504 T12840 T12841 amod nuclear,extracts
R9505 T12841 T12839 dobj extracts,using
R9506 T12842 T12839 prep from,using
R9507 T12843 T12846 amod untreated,RAW
R9508 T12844 T12843 cc and,untreated
R9509 T12845 T12843 conj LPS-treated,untreated
R9510 T12846 T12842 pobj RAW,from
R9511 T12847 T12848 nummod 264.7,macrophages
R9512 T12848 T12842 pobj macrophages,from
R9513 T12849 T12804 punct .,Bound
R9514 T12850 T12855 nummod Three,probes
R9515 T12851 T12855 amod different,probes
R9516 T12852 T12853 amod double,stranded
R9517 T12853 T12855 amod stranded,probes
R9518 T12854 T12855 compound oligonucleotide,probes
R9519 T12855 T12857 nsubjpass probes,used
R9520 T12856 T12857 auxpass were,used
R9521 T12857 T12857 ROOT used,used
R9522 T12858 T12857 prep for,used
R9523 T12859 T12858 pobj EMSA,for
R9524 T12860 T12857 punct ",",used
R9525 T12861 T12857 advcl representing,used
R9526 T12862 T12863 punct (,1
R9527 T12863 T12869 nummod 1,element
R9528 T12864 T12863 punct ),1
R9529 T12865 T12869 det the,element
R9530 T12866 T12869 amod putative,element
R9531 T12867 T12868 compound SerpinB2,C/EBP
R9532 T12868 T12869 compound C/EBP,element
R9533 T12869 T12861 dobj element,representing
R9534 T12870 T12884 punct (,element
R9535 T12871 T12884 nmod −,element
R9536 T12872 T12884 nummod 203,element
R9537 T12873 T12884 nummod /,element
R9538 T12874 T12884 nmod −,element
R9539 T12875 T12874 nummod 192,−
R9540 T12876 T12874 punct ),−
R9541 T12877 T12879 punct ",",2
R9542 T12878 T12879 punct (,2
R9543 T12879 T12884 meta 2,element
R9544 T12880 T12879 punct ),2
R9545 T12881 T12884 det a,element
R9546 T12882 T12884 amod mutant,element
R9547 T12883 T12884 compound SerpinB2,element
R9548 T12884 T12869 appos element,element
R9549 T12885 T12884 acl containing,element
R9550 T12886 T12888 det the,mutation
R9551 T12887 T12888 amod same,mutation
R9552 T12888 T12885 dobj mutation,containing
R9553 T12889 T12888 prep as,mutation
R9554 T12890 T12889 prep in,as
R9555 T12891 T12893 compound pGLmP-539mC,EBP
R9556 T12892 T12893 compound /,EBP
R9557 T12893 T12890 pobj EBP,in
R9558 T12894 T12893 cc and,EBP
R9559 T12895 T12896 punct (,3
R9560 T12896 T12903 meta 3,element
R9561 T12897 T12896 punct ),3
R9562 T12898 T12903 det the,element
R9563 T12899 T12903 nsubj rat,element
R9564 T12900 T12903 nmod albumin,element
R9565 T12901 T12903 nmod promoter,element
R9566 T12902 T12903 compound distal,element
R9567 T12903 T12908 amod element,region
R9568 T12904 T12903 nummod 1,element
R9569 T12905 T12903 punct (,element
R9570 T12906 T12903 appos DEI,element
R9571 T12907 T12903 punct ),element
R9572 T12908 T12888 conj region,mutation
R9573 T12909 T12908 acl containing,region
R9574 T12910 T12915 det a,site
R9575 T12911 T12912 amod high,affinity
R9576 T12912 T12915 nmod affinity,site
R9577 T12913 T12915 nmod C/EBP,site
R9578 T12914 T12915 amod binding,site
R9579 T12915 T12909 dobj site,containing
R9580 T12916 T12857 punct .,used
R9581 T12917 T12918 nummod Four,bands
R9582 T12918 T12928 nsubjpass bands,detected
R9583 T12919 T12918 prep of,bands
R9584 T12920 T12921 amod different,mobilities
R9585 T12921 T12919 pobj mobilities,of
R9586 T12922 T12918 punct ",",bands
R9587 T12923 T12918 acl representing,bands
R9588 T12924 T12926 amod DNA-nuclear,complexes
R9589 T12925 T12926 compound protein,complexes
R9590 T12926 T12923 dobj complexes,representing
R9591 T12927 T12928 auxpass were,detected
R9592 T12928 T12928 ROOT detected,detected
R9593 T12929 T12928 punct (,detected
R9594 T12930 T12931 compound Fig.,5A
R9595 T12931 T12928 npadvmod 5A,detected
R9596 T12932 T12928 punct ),detected
R9597 T12933 T12928 punct .,detected
R9598 T12934 T12934 ROOT Three,Three
R9599 T12935 T12934 prep of,Three
R9600 T12936 T12937 det these,bands
R9601 T12937 T12935 pobj bands,of
R9602 T12938 T12945 punct (,represent
R9603 T12939 T12945 nsubj I,represent
R9604 T12940 T12939 punct ",",I
R9605 T12941 T12939 appos II,I
R9606 T12942 T12943 punct ",",III
R9607 T12943 T12941 conj III,II
R9608 T12944 T12945 punct ),represent
R9609 T12945 T12934 parataxis represent,Three
R9610 T12946 T12945 dobj complexes,represent
R9611 T12947 T12946 prep with,complexes
R9612 T12948 T12950 amod single,DNA
R9613 T12949 T12950 amod stranded,DNA
R9614 T12950 T12947 pobj DNA,with
R9615 T12951 T12950 punct (,DNA
R9616 T12952 T12953 compound Fig.,5A
R9617 T12953 T12950 appos 5A,DNA
R9618 T12954 T12950 punct ),DNA
R9619 T12955 T12964 mark while,induced
R9620 T12956 T12957 det the,uppermost
R9621 T12957 T12962 nmod uppermost,complex
R9622 T12958 T12960 punct (,migrating
R9623 T12959 T12960 amod slowest,migrating
R9624 T12960 T12957 appos migrating,uppermost
R9625 T12961 T12957 punct ),uppermost
R9626 T12962 T12964 nsubjpass complex,induced
R9627 T12963 T12964 auxpass was,induced
R9628 T12964 T12945 advcl induced,represent
R9629 T12965 T12964 agent by,induced
R9630 T12966 T12965 pobj LPS,by
R9631 T12967 T12945 punct .,represent
R9632 T12968 T12970 det The,complex
R9633 T12969 T12970 amod LPS-inducible,complex
R9634 T12970 T12973 nsubjpass complex,detected
R9635 T12971 T12973 auxpass was,detected
R9636 T12972 T12973 neg not,detected
R9637 T12973 T12973 ROOT detected,detected
R9638 T12974 T12973 advcl using,detected
R9639 T12975 T12979 det the,probe
R9640 T12976 T12979 amod mutant,probe
R9641 T12977 T12979 compound C/EBP,probe
R9642 T12978 T12979 compound oligonucleotide,probe
R9643 T12979 T12974 dobj probe,using
R9644 T12980 T12973 cc and,detected
R9645 T12981 T12983 aux could,abolished
R9646 T12982 T12983 auxpass be,abolished
R9647 T12983 T12973 conj abolished,detected
R9648 T12984 T12983 agent by,abolished
R9649 T12985 T12986 det an,excess
R9650 T12986 T12984 pobj excess,by
R9651 T12987 T12986 prep of,excess
R9652 T12988 T12990 amod unlabeled,oligonucleotide
R9653 T12989 T12990 amod double-stranded,oligonucleotide
R9654 T12990 T12987 pobj oligonucleotide,of
R9655 T12991 T12983 punct ",",abolished
R9656 T12992 T12983 advcl carrying,abolished
R9657 T12993 T12996 preconj either,sequence
R9658 T12994 T12996 det the,sequence
R9659 T12995 T12996 amod same,sequence
R9660 T12996 T12992 dobj sequence,carrying
R9661 T12997 T12996 punct (,sequence
R9662 T12998 T12999 compound Fig.,5B
R9663 T12999 T12996 appos 5B,sequence
R9664 T13000 T12999 punct ",",5B
R9665 T13001 T12996 parataxis lanes,sequence
R9666 T13002 T13001 nummod 4,lanes
R9667 T13003 T13002 cc and,4
R9668 T13004 T13002 conj 5,4
R9669 T13005 T13004 punct ),5
R9670 T13006 T13002 cc or,4
R9671 T13007 T13008 det the,sequence
R9672 T13008 T13002 conj sequence,4
R9673 T13009 T13008 prep of,sequence
R9674 T13010 T13014 det a,site
R9675 T13011 T13014 amod known,site
R9676 T13012 T13014 nmod C/EBP,site
R9677 T13013 T13014 amod binding,site
R9678 T13014 T13009 pobj site,of
R9679 T13015 T12992 prep from,carrying
R9680 T13016 T13019 det the,promoter
R9681 T13017 T13019 compound rat,promoter
R9682 T13018 T13019 compound albumin,promoter
R9683 T13019 T13015 pobj promoter,from
R9684 T13020 T13019 punct (,promoter
R9685 T13021 T13022 compound Fig.,5B
R9686 T13022 T13019 appos 5B,promoter
R9687 T13023 T13019 punct ",",promoter
R9688 T13024 T13025 nmod lanes,8
R9689 T13025 T12992 npadvmod 8,carrying
R9690 T13026 T13025 cc and,8
R9691 T13027 T13025 conj 9,8
R9692 T13028 T12983 punct ),abolished
R9693 T13029 T12983 punct ",",abolished
R9694 T13030 T12983 cc but,abolished
R9695 T13031 T13032 neg not,by
R9696 T13032 T12983 conj by,abolished
R9697 T13033 T13035 det the,oligonucleotide
R9698 T13034 T13035 amod mutated,oligonucleotide
R9699 T13035 T13032 pobj oligonucleotide,by
R9700 T13036 T13038 punct (,5B
R9701 T13037 T13038 compound Fig.,5B
R9702 T13038 T13035 appos 5B,oligonucleotide
R9703 T13039 T13038 punct ",",5B
R9704 T13040 T13035 conj lanes,oligonucleotide
R9705 T13041 T13040 nummod 6,lanes
R9706 T13042 T13041 cc and,6
R9707 T13043 T13041 conj 7,6
R9708 T13044 T12983 punct ),abolished
R9709 T13045 T12973 punct .,detected
R9710 T13046 T13049 advmod Together,indicate
R9711 T13047 T13048 det these,data
R9712 T13048 T13049 nsubj data,indicate
R9713 T13049 T13049 ROOT indicate,indicate
R9714 T13050 T13062 mark that,binds
R9715 T13051 T13055 det the,site
R9716 T13052 T13055 amod putative,site
R9717 T13053 T13054 compound SerpinB2,C/EBP
R9718 T13054 T13055 compound C/EBP,site
R9719 T13055 T13062 nsubj site,binds
R9720 T13056 T13055 prep at,site
R9721 T13057 T13062 nummod −,binds
R9722 T13058 T13059 nummod 203,/
R9723 T13059 T13060 compound /,−
R9724 T13060 T13062 nsubj −,binds
R9725 T13061 T13060 nummod 192,−
R9726 T13062 T13049 ccomp binds,indicate
R9727 T13063 T13065 det a,complex
R9728 T13064 T13065 amod LPS-inducible,complex
R9729 T13065 T13062 dobj complex,binds
R9730 T13066 T13067 nsubj that,is
R9731 T13067 T13065 relcl is,complex
R9732 T13068 T13067 acomp likely,is
R9733 T13069 T13070 aux to,contain
R9734 T13070 T13068 xcomp contain,likely
R9735 T13071 T13072 det a,member
R9736 T13072 T13070 dobj member,contain
R9737 T13073 T13072 prep of,member
R9738 T13074 T13076 det the,family
R9739 T13075 T13076 compound C/EBP,family
R9740 T13076 T13073 pobj family,of
R9741 T13077 T13076 prep of,family
R9742 T13078 T13079 compound transcription,factors
R9743 T13079 T13077 pobj factors,of
R9744 T13080 T13049 punct .,indicate
R17429 T24333 T24336 det The,factor
R17430 T24334 T24336 amod LPS-inducible,factor
R17431 T24335 T24336 amod nuclear,factor
R17432 T24336 T24337 nsubj factor,binding
R17433 T24337 T24337 ROOT binding,binding
R17434 T24338 T24344 det the,site
R17435 T24339 T24344 amod murine,site
R17436 T24340 T24342 nmod SerpinB2,promoter
R17437 T24341 T24342 amod proximal,promoter
R17438 T24342 T24344 compound promoter,site
R17439 T24343 T24344 compound C/EBP,site
R17440 T24344 T24345 nsubj site,contains
R17441 T24345 T24337 ccomp contains,binding
R17442 T24346 T24348 compound C/EBP,β
R17443 T24347 T24348 punct -,β
R17444 T24348 T24345 dobj β,contains
R17445 T24349 T24337 punct .,binding
R17446 T24350 T24353 punct (,EMSA
R17447 T24351 T24353 nmod A,EMSA
R17448 T24352 T24353 punct ),EMSA
R17449 T24353 T24366 nsubj EMSA,treated
R17450 T24354 T24353 prep with,EMSA
R17451 T24355 T24356 amod nuclear,extracts
R17452 T24356 T24354 pobj extracts,with
R17453 T24357 T24356 prep from,extracts
R17454 T24358 T24360 amod untreated,UN
R17455 T24359 T24360 punct (,UN
R17456 T24360 T24357 pobj UN,from
R17457 T24361 T24360 punct ),UN
R17458 T24362 T24360 cc and,UN
R17459 T24363 T24365 nummod 10,LPS
R17460 T24364 T24365 compound hr,LPS
R17461 T24365 T24360 conj LPS,UN
R17462 T24366 T24366 ROOT treated,treated
R17463 T24367 T24370 punct (,RAW
R17464 T24368 T24370 nmod LPS,RAW
R17465 T24369 T24370 punct ),RAW
R17466 T24370 T24372 nmod RAW,cells
R17467 T24371 T24370 nummod 264.7,RAW
R17468 T24372 T24366 dobj cells,treated
R17469 T24373 T24372 acl incubated,cells
R17470 T24374 T24373 prep with,incubated
R17471 T24375 T24385 preconj either,probe
R17472 T24376 T24385 det the,probe
R17473 T24377 T24385 nmod murine,probe
R17474 T24378 T24379 compound SerpinB2,promoter
R17475 T24379 T24385 nmod promoter,probe
R17476 T24380 T24385 nmod −,probe
R17477 T24381 T24385 nummod 212,probe
R17478 T24382 T24385 nummod /,probe
R17479 T24383 T24385 nmod −,probe
R17480 T24384 T24385 nummod 185,probe
R17481 T24385 T24374 pobj probe,with
R17482 T24386 T24385 acl containing,probe
R17483 T24387 T24400 det an,site
R17484 T24388 T24400 amod intact,site
R17485 T24389 T24391 punct (,C/EBP
R17486 T24390 T24391 nummod SerpinB2,C/EBP
R17487 T24391 T24388 appos C/EBP,intact
R17488 T24392 T24391 punct ),C/EBP
R17489 T24393 T24388 cc or,intact
R17490 T24394 T24388 conj mutated,intact
R17491 T24395 T24397 punct (,C/EBP
R17492 T24396 T24397 amod mutant,C/EBP
R17493 T24397 T24400 meta C/EBP,site
R17494 T24398 T24397 punct ),C/EBP
R17495 T24399 T24400 compound C/EBP,site
R17496 T24400 T24386 dobj site,containing
R17497 T24401 T24374 cc or,with
R17498 T24402 T24374 conj with,with
R17499 T24403 T24404 det the,rat
R17500 T24404 T24415 nsubj rat,probe
R17501 T24405 T24409 compound albumin,C/EBP
R17502 T24406 T24409 compound promoter,C/EBP
R17503 T24407 T24408 compound DEI,region
R17504 T24408 T24409 compound region,C/EBP
R17505 T24409 T24415 punct C/EBP,probe
R17506 T24410 T24412 punct (,albumin
R17507 T24411 T24412 compound rat,albumin
R17508 T24412 T24409 parataxis albumin,C/EBP
R17509 T24413 T24415 compound C/EBP,probe
R17510 T24414 T24415 punct ),probe
R17511 T24415 T24402 pobj probe,with
R17512 T24416 T24366 punct .,treated
R17513 T24417 T24417 ROOT (,(
R17514 T24418 T24417 dep B,(
R17515 T24419 T24418 punct ),B
R17516 T24420 T24422 compound Cold,EMSAs
R17517 T24421 T24422 compound competition,EMSAs
R17518 T24422 T24448 nsubj EMSAs,described
R17519 T24423 T24422 acl performed,EMSAs
R17520 T24424 T24423 prep with,performed
R17521 T24425 T24447 det the,oligonucleotides
R17522 T24426 T24427 amod radiolabelled,murine
R17523 T24427 T24447 nmod murine,oligonucleotides
R17524 T24428 T24429 compound SerpinB2,promoter
R17525 T24429 T24447 nmod promoter,oligonucleotides
R17526 T24430 T24447 nmod −,oligonucleotides
R17527 T24431 T24447 nummod 212,oligonucleotides
R17528 T24432 T24447 nummod /,oligonucleotides
R17529 T24433 T24446 npadvmod −,stranded
R17530 T24434 T24435 nummod 185,probe
R17531 T24435 T24433 appos probe,−
R17532 T24436 T24435 cc and,probe
R17533 T24437 T24440 det a,excess
R17534 T24438 T24440 amod 100-fold,excess
R17535 T24439 T24440 compound molar,excess
R17536 T24440 T24435 conj excess,probe
R17537 T24441 T24440 prep of,excess
R17538 T24442 T24441 pobj each,of
R17539 T24443 T24442 prep of,each
R17540 T24444 T24445 det the,double
R17541 T24445 T24443 pobj double,of
R17542 T24446 T24447 amod stranded,oligonucleotides
R17543 T24447 T24448 nsubj oligonucleotides,described
R17544 T24448 T24448 ROOT described,described
R17545 T24449 T24448 prep in,described
R17546 T24450 T24451 punct (,A
R17547 T24451 T24449 pobj A,in
R17548 T24452 T24448 punct ),described
R17549 T24453 T24453 ROOT demonstrate,demonstrate
R17550 T24454 T24455 det the,specificity
R17551 T24455 T24453 dobj specificity,demonstrate
R17552 T24456 T24455 prep of,specificity
R17553 T24457 T24459 det the,complexes
R17554 T24458 T24459 amod DNA-protein,complexes
R17555 T24459 T24456 pobj complexes,of
R17556 T24460 T24453 punct .,demonstrate
R17557 T24461 T24467 punct (,performed
R17558 T24462 T24465 nmod C,assays
R17559 T24463 T24462 punct ),C
R17560 T24464 T24465 compound Supershift,assays
R17561 T24465 T24467 nsubjpass assays,performed
R17562 T24466 T24467 auxpass were,performed
R17563 T24467 T24467 ROOT performed,performed
R17564 T24468 T24467 prep with,performed
R17565 T24469 T24470 det the,−
R17566 T24470 T24468 pobj −,with
R17567 T24471 T24473 nummod 212,−
R17568 T24472 T24473 nummod /,−
R17569 T24473 T24470 appos −,−
R17570 T24474 T24475 nummod 185,probe
R17571 T24475 T24473 appos probe,−
R17572 T24476 T24475 prep by,probe
R17573 T24477 T24475 prep after,probe
R17574 T24478 T24477 pobj preincubation,after
R17575 T24479 T24478 prep with,preincubation
R17576 T24480 T24484 det the,antibody
R17577 T24481 T24484 amod indicated,antibody
R17578 T24482 T24484 amod specific,antibody
R17579 T24483 T24484 compound C/EBP,antibody
R17580 T24484 T24479 pobj antibody,with
R17581 T24485 T24473 punct .,−
R17582 T24486 T24488 det The,complex
R17583 T24487 T24488 amod LPS-inducible,complex
R17584 T24488 T24490 nsubjpass complex,indicated
R17585 T24489 T24490 auxpass is,indicated
R17586 T24490 T24490 ROOT indicated,indicated
R17587 T24491 T24490 prep with,indicated
R17588 T24492 T24493 det an,arrowhead
R17589 T24493 T24491 pobj arrowhead,with
R17590 T24494 T24490 punct .,indicated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T24222 1596-1601 NN denotes C/EBP
T24221 1587-1595 NN denotes promoter
T24220 1578-1586 JJ denotes proximal
T24219 1569-1577 NN denotes SerpinB2
T24218 1562-1568 JJ denotes murine
T24217 1558-1561 DT denotes the
T24216 1550-1557 VB denotes binding
T24215 1543-1549 NN denotes factor
T24214 1535-1542 JJ denotes nuclear
T24213 1521-1534 JJ denotes LPS-inducible
T24212 1517-1520 DT denotes The
T12665 1291-1296 DT denotes these
T12664 1282-1290 RB denotes Together
T12663 1279-1280 -RRB- denotes )
T12662 1278-1279 CD denotes 7
T12661 1274-1277 CC denotes and
T12660 1272-1273 CD denotes 6
T12659 1266-1271 NN denotes lanes
T12658 1264-1265 -COMMA- denotes ,
T12657 1262-1264 NN denotes 5B
T12656 1257-1261 NNP denotes Fig.
T12655 1256-1257 -LRB- denotes (
T12654 1240-1255 NN denotes oligonucleotide
T12653 1232-1239 VB denotes mutated
T12652 1228-1231 DT denotes the
T12651 1225-1227 IN denotes by
T12650 1221-1224 RB denotes not
T12649 1217-1220 CC denotes but
T12648 1215-1216 -COMMA- denotes ,
T12647 1214-1215 -RRB- denotes )
T12646 1213-1214 CD denotes 9
T12645 1209-1212 CC denotes and
T12644 1207-1208 CD denotes 8
T12643 1201-1206 NN denotes lanes
T12642 1199-1200 -COMMA- denotes ,
T12641 1197-1199 NN denotes 5B
T12640 1192-1196 NNP denotes Fig.
T12639 1191-1192 -LRB- denotes (
T12638 1182-1190 NN denotes promoter
T12637 1174-1181 NN denotes albumin
T12636 1170-1173 NN denotes rat
T12635 1166-1169 DT denotes the
T12634 1161-1165 IN denotes from
T12633 1156-1160 NN denotes site
T12632 1148-1155 NN denotes binding
T12631 1142-1147 NN denotes C/EBP
T12630 1136-1141 VB denotes known
T12629 1134-1135 DT denotes a
T12628 1131-1133 IN denotes of
T12627 1122-1130 NN denotes sequence
T12626 1118-1121 DT denotes the
T12625 1115-1117 CC denotes or
T12624 1113-1114 -RRB- denotes )
T12623 1112-1113 CD denotes 5
T12622 1108-1111 CC denotes and
T12621 1106-1107 CD denotes 4
T12620 1100-1105 NN denotes lanes
T12619 1098-1099 -COMMA- denotes ,
T12618 1096-1098 NN denotes 5B
T12617 1091-1095 NNP denotes Fig.
T12616 1090-1091 -LRB- denotes (
T12615 1081-1089 NN denotes sequence
T12614 1076-1080 JJ denotes same
T12613 1072-1075 DT denotes the
T12612 1065-1071 CC denotes either
T12611 1056-1064 VB denotes carrying
T12610 1054-1055 -COMMA- denotes ,
T12609 1039-1054 NN denotes oligonucleotide
T12608 1023-1038 JJ denotes double-stranded
T12607 1013-1022 JJ denotes unlabeled
T12606 1010-1012 IN denotes of
T12605 1003-1009 NN denotes excess
T12604 1000-1002 DT denotes an
T12603 997-999 IN denotes by
T12602 987-996 VB denotes abolished
T12601 984-986 VB denotes be
T12600 978-983 MD denotes could
T12599 974-977 CC denotes and
T12598 968-973 NN denotes probe
T12597 952-967 NN denotes oligonucleotide
T12596 946-951 NN denotes C/EBP
T12595 939-945 JJ denotes mutant
T12594 935-938 DT denotes the
T12593 929-934 VB denotes using
T12592 920-928 VB denotes detected
T12591 916-919 RB denotes not
T12590 912-915 VB denotes was
T12589 904-911 NN denotes complex
T12588 890-903 JJ denotes LPS-inducible
T12587 886-889 DT denotes The
T12586 881-884 NN denotes LPS
T12585 878-880 IN denotes by
T12584 870-877 VB denotes induced
T12583 866-869 VB denotes was
T12582 858-865 NN denotes complex
T12581 856-857 -RRB- denotes )
T12580 847-856 VB denotes migrating
T12579 839-846 JJ denotes slowest
T12578 838-839 -LRB- denotes (
T12577 828-837 JJ denotes uppermost
T12576 824-827 DT denotes the
T12575 818-823 IN denotes while
T12574 816-817 -RRB- denotes )
T12573 814-816 NN denotes 5A
T12572 809-813 NN denotes Fig.
T12571 808-809 -LRB- denotes (
T12570 804-807 NN denotes DNA
T12569 795-803 JJ denotes stranded
T12568 788-794 JJ denotes single
T12567 783-787 IN denotes with
T12566 773-782 NN denotes complexes
T12565 763-772 VB denotes represent
T12564 761-762 -RRB- denotes )
T12563 758-761 CD denotes III
T12562 756-757 -COMMA- denotes ,
T12561 754-756 CD denotes II
T12560 752-753 -COMMA- denotes ,
T12559 751-752 CD denotes I
T12558 750-751 -LRB- denotes (
T12557 744-749 NN denotes bands
T12556 738-743 DT denotes these
T12555 735-737 IN denotes of
T12554 729-734 CD denotes Three
T12553 726-727 -RRB- denotes )
T12552 724-726 NN denotes 5A
T12551 719-723 NNP denotes Fig.
T12550 718-719 -LRB- denotes (
T12549 709-717 VB denotes detected
T12548 704-708 VB denotes were
T12547 694-703 NN denotes complexes
T12546 686-693 NN denotes protein
T12545 674-685 JJ denotes DNA-nuclear
T12544 661-673 VB denotes representing
T12543 659-660 -COMMA- denotes ,
T12542 649-659 NN denotes mobilities
T12541 639-648 JJ denotes different
T12540 636-638 IN denotes of
T12539 630-635 NN denotes bands
T12538 625-629 CD denotes Four
T12537 619-623 NN denotes site
T12536 611-618 NN denotes binding
T12535 605-610 NN denotes C/EBP
T12534 596-604 NN denotes affinity
T12533 591-595 JJ denotes high
T12532 589-590 DT denotes a
T12531 578-588 VB denotes containing
T12530 571-577 NN denotes region
T12529 569-570 -RRB- denotes )
T12528 566-569 NN denotes DEI
T12527 565-566 -LRB- denotes (
T12526 563-564 CD denotes 1
T12525 555-562 NN denotes element
T12524 548-554 JJ denotes distal
T12523 539-547 NN denotes promoter
T12522 531-538 NN denotes albumin
T12521 527-530 NN denotes rat
T12520 523-526 DT denotes the
T12519 521-522 -RRB- denotes )
T12518 520-521 LS denotes 3
T12517 519-520 -LRB- denotes (
T12516 515-518 CC denotes and
T12515 499-514 NN denotes pGLmP-539mC/EBP
T12514 496-498 IN denotes in
T12513 493-495 IN denotes as
T12512 484-492 NN denotes mutation
T12511 479-483 JJ denotes same
T12510 475-478 DT denotes the
T12509 464-474 VB denotes containing
T12508 456-463 NN denotes element
T12507 447-455 NN denotes SerpinB2
T12506 440-446 JJ denotes mutant
T12505 438-439 DT denotes a
T12504 436-437 -RRB- denotes )
T12503 435-436 LS denotes 2
T12502 434-435 -LRB- denotes (
T12501 432-433 -COMMA- denotes ,
T12500 431-432 -RRB- denotes )
T12499 422-431 CD denotes −203/−192
T12498 421-422 -LRB- denotes (
T12497 413-420 NN denotes element
T12496 407-412 NN denotes C/EBP
T12495 398-406 NN denotes SerpinB2
T12494 389-397 JJ denotes putative
T12493 385-388 DT denotes the
T12492 383-384 -RRB- denotes )
T12491 382-383 LS denotes 1
T12490 381-382 -LRB- denotes (
T12489 368-380 VB denotes representing
T12488 366-367 -COMMA- denotes ,
T12487 362-366 NN denotes EMSA
T12486 358-361 IN denotes for
T12485 353-357 VB denotes used
T12484 348-352 VB denotes were
T12483 341-347 NN denotes probes
T12482 325-340 NN denotes oligonucleotide
T12481 316-324 JJ denotes stranded
T12480 309-315 JJ denotes double
T12479 299-308 JJ denotes different
T12478 293-298 CD denotes Three
T12477 280-291 NN denotes macrophages
T12476 274-279 CD denotes 264.7
T12475 270-273 NN denotes RAW
T12474 258-269 JJ denotes LPS-treated
T12473 254-257 CC denotes and
T12472 244-253 JJ denotes untreated
T12471 239-243 IN denotes from
T12470 230-238 NN denotes extracts
T12469 222-229 JJ denotes nuclear
T12468 216-221 VB denotes using
T12467 214-215 -RRB- denotes )
T12466 210-214 NN denotes EMSA
T12465 209-210 -LRB- denotes (
T12464 203-208 NN denotes assay
T12463 197-202 NN denotes shift
T12462 188-196 NN denotes mobility
T12461 172-187 JJ denotes electrophoretic
T12460 169-171 IN denotes by
T12459 156-168 VB denotes investigated
T12458 152-155 VB denotes was
T12457 150-151 -RRB- denotes )
T12456 141-150 NN denotes −203/−192
T12455 140-141 -LRB- denotes (
T12454 132-139 NN denotes element
T12453 126-131 NN denotes C/EBP
T12452 117-125 JJ denotes putative
T12451 113-116 DT denotes the
T12450 110-112 TO denotes to
T12693 1464-1471 NN denotes factors
T12692 1450-1463 NN denotes transcription
T12691 1447-1449 IN denotes of
T12690 1440-1446 NN denotes family
T12689 1434-1439 NN denotes C/EBP
T12688 1430-1433 DT denotes the
T12687 1427-1429 IN denotes of
T12686 1420-1426 NN denotes member
T12685 1418-1419 DT denotes a
T12684 1410-1417 VB denotes contain
T12683 1407-1409 TO denotes to
T12682 1400-1406 JJ denotes likely
T12681 1397-1399 VB denotes is
T12680 1392-1396 WDT denotes that
T12679 1384-1391 NN denotes complex
T12678 1370-1383 JJ denotes LPS-inducible
T12677 1368-1369 DT denotes a
T12676 1362-1367 VB denotes binds
T12675 1352-1361 NN denotes −203/−192
T12674 1349-1351 IN denotes at
T12673 1344-1348 NN denotes site
T12672 1338-1343 NN denotes C/EBP
T12671 1329-1337 NN denotes SerpinB2
T12670 1320-1328 JJ denotes putative
T12669 1316-1319 DT denotes the
T12668 1311-1315 IN denotes that
T12667 1302-1310 VB denotes indicate
T12666 1297-1301 NN denotes data
T12449 102-109 VB denotes binding
T12448 95-101 NN denotes factor
T12447 87-94 JJ denotes Nuclear
T12446 75-86 NN denotes Macrophages
T12445 69-74 CD denotes 264.7
T12444 65-68 NN denotes RAW
T12443 60-64 IN denotes from
T12442 53-59 NN denotes Factor
T12441 45-52 JJ denotes Nuclear
T12440 33-44 JJ denotes LPS-induced
T12439 30-32 DT denotes an
T12438 27-29 IN denotes by
T12437 21-26 VB denotes Bound
T12436 18-20 VB denotes is
T12435 10-17 NN denotes Element
T12434 4-9 NN denotes C/EBP
T12433 0-3 DT denotes The
T24233 2367-2376 NN denotes arrowhead
T24232 2364-2366 DT denotes an
T24231 2359-2363 IN denotes with
T24230 2349-2358 VB denotes indicated
T24229 2346-2348 VB denotes is
T24228 2338-2345 NN denotes complex
T24227 2324-2337 JJ denotes LPS-inducible
T24226 2320-2323 DT denotes The
T24225 1616-1623 NN denotes C/EBP-β
T24224 1607-1615 VB denotes contains
T24223 1602-1606 NN denotes site
R9166 T12435 T12433 arg1Of Element,The
R9167 T12435 T12434 arg1Of Element,C/EBP
R9168 T12435 T12436 arg1Of Element,is
R9169 T12435 T12437 arg2Of Element,Bound
R9170 T12437 T12436 arg2Of Bound,is
R9171 T12442 T12437 arg1Of Factor,Bound
R9172 T12442 T12438 arg2Of Factor,by
R9173 T12442 T12439 arg1Of Factor,an
R9174 T12442 T12440 arg1Of Factor,LPS-induced
R9175 T12442 T12441 arg1Of Factor,Nuclear
R9176 T12442 T12443 arg1Of Factor,from
R9177 T12446 T12443 arg2Of Macrophages,from
R9178 T12446 T12444 arg1Of Macrophages,RAW
R9179 T12446 T12445 arg1Of Macrophages,264.7
R9180 T12448 T12447 arg1Of factor,Nuclear
R9181 T12448 T12449 arg1Of factor,binding
R9182 T12448 T12458 arg1Of factor,was
R9183 T12448 T12459 arg2Of factor,investigated
R9184 T12448 T12468 arg1Of factor,using
R9185 T12449 T12450 arg1Of binding,to
R9186 T12454 T12450 arg2Of element,to
R9187 T12454 T12451 arg1Of element,the
R9188 T12454 T12452 arg1Of element,putative
R9189 T12454 T12453 arg1Of element,C/EBP
R9190 T12454 T12455 arg1Of element,(
R9191 T12456 T12455 arg2Of −203/−192,(
R9192 T12457 T12455 arg3Of ),(
R9193 T12459 T12458 arg2Of investigated,was
R9194 T12459 T12468 modOf investigated,using
R9195 T12464 T12459 arg1Of assay,investigated
R9196 T12464 T12460 arg2Of assay,by
R9197 T12464 T12461 arg1Of assay,electrophoretic
R9198 T12464 T12462 arg1Of assay,mobility
R9199 T12464 T12463 arg1Of assay,shift
R9200 T12464 T12465 arg1Of assay,(
R9201 T12466 T12465 arg2Of EMSA,(
R9202 T12467 T12465 arg3Of ),(
R9203 T12470 T12468 arg2Of extracts,using
R9204 T12470 T12469 arg1Of extracts,nuclear
R9205 T12470 T12471 arg1Of extracts,from
R9206 T12472 T12473 arg1Of untreated,and
R9207 T12474 T12473 arg2Of LPS-treated,and
R9208 T12477 T12471 arg2Of macrophages,from
R9209 T12477 T12472 arg1Of macrophages,untreated
R9210 T12477 T12474 arg1Of macrophages,LPS-treated
R9211 T12477 T12475 arg1Of macrophages,RAW
R9212 T12477 T12476 arg1Of macrophages,264.7
R9213 T12481 T12479 arg1Of stranded,different
R9214 T12481 T12480 arg1Of stranded,double
R9215 T12483 T12478 arg1Of probes,Three
R9216 T12483 T12481 arg1Of probes,stranded
R9217 T12483 T12482 arg1Of probes,oligonucleotide
R9218 T12483 T12484 arg1Of probes,were
R9219 T12483 T12485 arg2Of probes,used
R9220 T12483 T12489 arg1Of probes,representing
R9221 T12485 T12484 arg2Of used,were
R9222 T12485 T12486 arg1Of used,for
R9223 T12485 T12488 arg1Of used,","
R9224 T12485 T12489 modOf used,representing
R9225 T12487 T12486 arg2Of EMSA,for
R9226 T12491 T12492 arg1Of 1,)
R9227 T12497 T12490 arg1Of element,(
R9228 T12497 T12491 arg1Of element,1
R9229 T12497 T12493 arg1Of element,the
R9230 T12497 T12494 arg1Of element,putative
R9231 T12497 T12495 arg1Of element,SerpinB2
R9232 T12497 T12496 arg1Of element,C/EBP
R9233 T12497 T12498 arg1Of element,(
R9234 T12497 T12501 arg1Of element,","
R9235 T12499 T12498 arg2Of −203/−192,(
R9236 T12500 T12498 arg3Of ),(
R9237 T12503 T12504 arg1Of 2,)
R9238 T12508 T12501 arg2Of element,","
R9239 T12508 T12502 arg1Of element,(
R9240 T12508 T12503 arg1Of element,2
R9241 T12508 T12505 arg1Of element,a
R9242 T12508 T12506 arg1Of element,mutant
R9243 T12508 T12507 arg1Of element,SerpinB2
R9244 T12508 T12509 arg1Of element,containing
R9245 T12508 T12516 arg1Of element,and
R9246 T12512 T12509 arg2Of mutation,containing
R9247 T12512 T12510 arg1Of mutation,the
R9248 T12512 T12511 arg1Of mutation,same
R9249 T12512 T12514 arg1Of mutation,in
R9250 T12514 T12513 arg1Of in,as
R9251 T12515 T12514 arg2Of pGLmP-539mC/EBP,in
R9252 T12518 T12497 arg1Of 3,element
R9253 T12518 T12517 arg1Of 3,(
R9254 T12518 T12519 arg1Of 3,)
R9255 T12525 T12489 arg2Of element,representing
R9256 T12525 T12518 arg1Of element,3
R9257 T12525 T12520 arg1Of element,the
R9258 T12525 T12521 arg1Of element,rat
R9259 T12525 T12522 arg1Of element,albumin
R9260 T12525 T12523 arg1Of element,promoter
R9261 T12525 T12524 arg1Of element,distal
R9262 T12525 T12526 arg1Of element,1
R9263 T12528 T12527 arg2Of DEI,(
R9264 T12529 T12527 arg3Of ),(
R9265 T12530 T12485 arg3Of region,used
R9266 T12530 T12527 arg1Of region,(
R9267 T12530 T12531 arg1Of region,containing
R9268 T12537 T12531 arg2Of site,containing
R9269 T12537 T12532 arg1Of site,a
R9270 T12537 T12533 arg1Of site,high
R9271 T12537 T12534 arg1Of site,affinity
R9272 T12537 T12535 arg1Of site,C/EBP
R9273 T12537 T12536 arg1Of site,binding
R9274 T12539 T12538 arg1Of bands,Four
R9275 T12539 T12540 arg1Of bands,of
R9276 T12539 T12548 arg1Of bands,were
R9277 T12539 T12549 arg2Of bands,detected
R9278 T12542 T12540 arg2Of mobilities,of
R9279 T12542 T12541 arg1Of mobilities,different
R9280 T12542 T12543 arg1Of mobilities,","
R9281 T12542 T12544 arg1Of mobilities,representing
R9282 T12547 T12544 arg2Of complexes,representing
R9283 T12547 T12545 arg1Of complexes,DNA-nuclear
R9284 T12547 T12546 arg1Of complexes,protein
R9285 T12549 T12548 arg2Of detected,were
R9286 T12549 T12550 arg1Of detected,(
R9287 T12552 T12550 arg2Of 5A,(
R9288 T12552 T12551 arg1Of 5A,Fig.
R9289 T12553 T12550 arg3Of ),(
R9290 T12554 T12555 arg1Of Three,of
R9291 T12554 T12558 arg1Of Three,(
R9292 T12554 T12565 arg1Of Three,represent
R9293 T12557 T12555 arg2Of bands,of
R9294 T12557 T12556 arg1Of bands,these
R9295 T12559 T12560 arg1Of I,","
R9296 T12560 T12558 arg2Of ",",(
R9297 T12560 T12562 arg1Of ",",","
R9298 T12561 T12560 arg2Of II,","
R9299 T12563 T12562 arg2Of III,","
R9300 T12564 T12558 arg3Of ),(
R9301 T12565 T12567 arg1Of represent,with
R9302 T12565 T12575 arg1Of represent,while
R9303 T12566 T12565 arg2Of complexes,represent
R9304 T12570 T12567 arg2Of DNA,with
R9305 T12570 T12568 arg1Of DNA,single
R9306 T12570 T12569 arg1Of DNA,stranded
R9307 T12570 T12571 arg1Of DNA,(
R9308 T12573 T12571 arg2Of 5A,(
R9309 T12573 T12572 arg1Of 5A,Fig.
R9310 T12574 T12571 arg3Of ),(
R9311 T12577 T12578 arg1Of uppermost,(
R9312 T12580 T12578 arg2Of migrating,(
R9313 T12580 T12579 arg1Of migrating,slowest
R9314 T12581 T12578 arg3Of ),(
R9315 T12582 T12576 arg1Of complex,the
R9316 T12582 T12577 arg1Of complex,uppermost
R9317 T12582 T12583 arg1Of complex,was
R9318 T12582 T12584 arg2Of complex,induced
R9319 T12584 T12575 arg2Of induced,while
R9320 T12584 T12583 arg2Of induced,was
R9321 T12586 T12584 arg1Of LPS,induced
R9322 T12586 T12585 arg2Of LPS,by
R9323 T12589 T12587 arg1Of complex,The
R9324 T12589 T12588 arg1Of complex,LPS-inducible
R9325 T12589 T12590 arg1Of complex,was
R9326 T12589 T12592 arg2Of complex,detected
R9327 T12589 T12600 arg1Of complex,could
R9328 T12589 T12601 arg1Of complex,be
R9329 T12589 T12602 arg2Of complex,abolished
R9330 T12589 T12611 arg1Of complex,carrying
R9331 T12592 T12590 arg2Of detected,was
R9332 T12592 T12591 arg1Of detected,not
R9333 T12592 T12593 modOf detected,using
R9334 T12592 T12599 arg1Of detected,and
R9335 T12598 T12593 arg2Of probe,using
R9336 T12598 T12594 arg1Of probe,the
R9337 T12598 T12595 arg1Of probe,mutant
R9338 T12598 T12596 arg1Of probe,C/EBP
R9339 T12598 T12597 arg1Of probe,oligonucleotide
R9340 T12599 T12610 arg1Of and,","
R9341 T12599 T12611 modOf and,carrying
R9342 T12602 T12599 arg2Of abolished,and
R9343 T12602 T12600 arg2Of abolished,could
R9344 T12602 T12601 arg2Of abolished,be
R9345 T12602 T12603 arg1Of abolished,by
R9346 T12605 T12603 arg2Of excess,by
R9347 T12605 T12604 arg1Of excess,an
R9348 T12605 T12606 arg1Of excess,of
R9349 T12609 T12606 arg2Of oligonucleotide,of
R9350 T12609 T12607 arg1Of oligonucleotide,unlabeled
R9351 T12609 T12608 arg1Of oligonucleotide,double-stranded
R9352 T12615 T12612 arg1Of sequence,either
R9353 T12615 T12613 arg1Of sequence,the
R9354 T12615 T12614 arg1Of sequence,same
R9355 T12615 T12616 arg1Of sequence,(
R9356 T12615 T12625 arg1Of sequence,or
R9357 T12618 T12617 arg1Of 5B,Fig.
R9358 T12618 T12619 arg1Of 5B,","
R9359 T12619 T12616 arg2Of ",",(
R9360 T12621 T12622 arg1Of 4,and
R9361 T12622 T12619 arg2Of and,","
R9362 T12622 T12620 arg1Of and,lanes
R9363 T12623 T12622 arg2Of 5,and
R9364 T12624 T12616 arg3Of ),(
R9365 T12625 T12611 arg2Of or,carrying
R9366 T12627 T12625 arg2Of sequence,or
R9367 T12627 T12626 arg1Of sequence,the
R9368 T12627 T12628 arg1Of sequence,of
R9369 T12627 T12651 arg1Of sequence,by
R9370 T12628 T12649 arg1Of of,but
R9371 T12633 T12628 arg2Of site,of
R9372 T12633 T12629 arg1Of site,a
R9373 T12633 T12630 arg2Of site,known
R9374 T12633 T12631 arg1Of site,C/EBP
R9375 T12633 T12632 arg1Of site,binding
R9376 T12633 T12634 arg1Of site,from
R9377 T12633 T12639 arg1Of site,(
R9378 T12638 T12634 arg2Of promoter,from
R9379 T12638 T12635 arg1Of promoter,the
R9380 T12638 T12636 arg1Of promoter,rat
R9381 T12638 T12637 arg1Of promoter,albumin
R9382 T12641 T12640 arg1Of 5B,Fig.
R9383 T12641 T12642 arg1Of 5B,","
R9384 T12642 T12639 arg2Of ",",(
R9385 T12644 T12645 arg1Of 8,and
R9386 T12645 T12642 arg2Of and,","
R9387 T12645 T12643 arg1Of and,lanes
R9388 T12646 T12645 arg2Of 9,and
R9389 T12647 T12639 arg3Of ),(
R9390 T12649 T12648 arg1Of but,","
R9391 T12651 T12649 arg2Of by,but
R9392 T12651 T12650 arg1Of by,not
R9393 T12654 T12651 arg2Of oligonucleotide,by
R9394 T12654 T12652 arg1Of oligonucleotide,the
R9395 T12654 T12653 arg2Of oligonucleotide,mutated
R9396 T12654 T12655 arg1Of oligonucleotide,(
R9397 T12657 T12656 arg1Of 5B,Fig.
R9398 T12657 T12658 arg1Of 5B,","
R9399 T12658 T12655 arg2Of ",",(
R9400 T12660 T12661 arg1Of 6,and
R9401 T12661 T12658 arg2Of and,","
R9402 T12661 T12659 arg1Of and,lanes
R9403 T12662 T12661 arg2Of 7,and
R9404 T12663 T12655 arg3Of ),(
R9405 T12666 T12665 arg1Of data,these
R9406 T12666 T12667 arg1Of data,indicate
R9407 T12667 T12664 arg1Of indicate,Together
R9408 T12673 T12669 arg1Of site,the
R9409 T12673 T12670 arg1Of site,putative
R9410 T12673 T12671 arg1Of site,SerpinB2
R9411 T12673 T12672 arg1Of site,C/EBP
R9412 T12673 T12674 arg1Of site,at
R9413 T12673 T12676 arg1Of site,binds
R9414 T12675 T12674 arg2Of −203/−192,at
R9415 T12676 T12667 arg2Of binds,indicate
R9416 T12676 T12668 arg1Of binds,that
R9417 T12679 T12676 arg2Of complex,binds
R9418 T12679 T12677 arg1Of complex,a
R9419 T12679 T12678 arg1Of complex,LPS-inducible
R9420 T12679 T12680 arg1Of complex,that
R9421 T12679 T12681 arg1Of complex,is
R9422 T12679 T12682 arg1Of complex,likely
R9423 T12679 T12684 arg1Of complex,contain
R9424 T12682 T12681 arg2Of likely,is
R9425 T12684 T12682 arg2Of contain,likely
R9426 T12684 T12683 arg1Of contain,to
R9427 T12686 T12684 arg2Of member,contain
R9428 T12686 T12685 arg1Of member,a
R9429 T12686 T12687 arg1Of member,of
R9430 T12690 T12687 arg2Of family,of
R9431 T12690 T12688 arg1Of family,the
R9432 T12690 T12689 arg1Of family,C/EBP
R9433 T12690 T12691 arg1Of family,of
R9434 T12693 T12691 arg2Of factors,of
R9435 T12693 T12692 arg1Of factors,transcription
R17389 T24215 T24212 arg1Of factor,The
R17390 T24215 T24213 arg1Of factor,LPS-inducible
R17391 T24215 T24214 arg1Of factor,nuclear
R17392 T24215 T24216 arg1Of factor,binding
R17393 T24215 T24224 arg1Of factor,contains
R17394 T24223 T24216 arg2Of site,binding
R17395 T24223 T24217 arg1Of site,the
R17396 T24223 T24218 arg1Of site,murine
R17397 T24223 T24219 arg1Of site,SerpinB2
R17398 T24223 T24220 arg1Of site,proximal
R17399 T24223 T24221 arg1Of site,promoter
R17400 T24223 T24222 arg1Of site,C/EBP
R17401 T24225 T24224 arg2Of C/EBP-β,contains
R17402 T24228 T24226 arg1Of complex,The
R17403 T24228 T24227 arg1Of complex,LPS-inducible
R17404 T24228 T24229 arg1Of complex,is
R17405 T24228 T24230 arg2Of complex,indicated
R17406 T24230 T24229 arg2Of indicated,is
R17407 T24230 T24231 arg1Of indicated,with
R17408 T24233 T24231 arg2Of arrowhead,with
R17409 T24233 T24232 arg1Of arrowhead,an

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T12417 1329-1337 Protein denotes SerpinB2
T12416 1174-1181 Protein denotes albumin
T12415 531-538 Protein denotes albumin
T12414 447-455 Protein denotes SerpinB2
T12413 398-406 Protein denotes SerpinB2
T24195 2006-2014 Protein denotes SerpinB2
T24194 1917-1924 Protein denotes albumin
T24193 1878-1885 Protein denotes albumin
T24192 1809-1817 Protein denotes SerpinB2
T24191 1753-1761 Protein denotes SerpinB2
T24190 1616-1623 Protein denotes C/EBP-β
T24189 1569-1577 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12702 1329-1337 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T12701 447-455 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T12700 398-406 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T24253 1616-1623 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T24252 2006-2014 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T24251 1809-1817 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T24250 1753-1761 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T24249 1569-1577 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T12418 1450-1463 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T24197 2310-2318 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T24196 1550-1557 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T12421 1148-1155 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T12420 611-618 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T12419 102-109 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T24204 2310-2318 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T24203 2310-2318 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T24202 2172-2189 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes
T24201 2168-2189 http://purl.obolibrary.org/obo/GO_0097522 denotes DNA-protein complexes
T24200 2168-2189 http://purl.obolibrary.org/obo/GO_0032993 denotes DNA-protein complexes
T24199 2168-2189 http://purl.obolibrary.org/obo/GO_0001114 denotes DNA-protein complexes
T24198 1714-1719 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T12422 686-703 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes

sentences

Id Subject Object Predicate Lexical cue
T24178 2320-2377 Sentence denotes The LPS-inducible complex is indicated with an arrowhead.
T24177 1625-2319 Sentence denotes (A) EMSA with nuclear extracts from untreated (UN) and 10 hr LPS treated (LPS) RAW 264.7 cells incubated with either the murine SerpinB2 promoter −212/−185 probe containing an intact (SerpinB2 C/EBP) or mutated (mutant C/EBP) C/EBP site or with the rat albumin promoter DEI region C/EBP (rat albumin C/EBP) probe. (B) Cold competition EMSAs performed with the radiolabelled murine SerpinB2 promoter −212/−185 probe and a 100-fold molar excess of each of the double stranded oligonucleotides described in (A) demonstrate the specificity of the DNA-protein complexes. (C) Supershift assays were performed with the −212/−185 probe by after preincubation with the indicated specific C/EBP antibody.
T24176 1517-1624 Sentence denotes The LPS-inducible nuclear factor binding the murine SerpinB2 proximal promoter C/EBP site contains C/EBP-β.
T12405 1282-1472 Sentence denotes Together these data indicate that the putative SerpinB2 C/EBP site at −203/−192 binds a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors.
T12404 886-1281 Sentence denotes The LPS-inducible complex was not detected using the mutant C/EBP oligonucleotide probe and could be abolished by an excess of unlabeled double-stranded oligonucleotide, carrying either the same sequence (Fig. 5B, lanes 4 and 5) or the sequence of a known C/EBP binding site from the rat albumin promoter (Fig. 5B, lanes 8 and 9), but not by the mutated oligonucleotide (Fig. 5B, lanes 6 and 7).
T12403 729-885 Sentence denotes Three of these bands (I, II, III) represent complexes with single stranded DNA (Fig. 5A) while the uppermost (slowest migrating) complex was induced by LPS.
T12402 625-728 Sentence denotes Four bands of different mobilities, representing DNA-nuclear protein complexes were detected (Fig. 5A).
T12401 293-624 Sentence denotes Three different double stranded oligonucleotide probes were used for EMSA, representing (1) the putative SerpinB2 C/EBP element (−203/−192), (2) a mutant SerpinB2 element containing the same mutation as in pGLmP-539mC/EBP and (3) the rat albumin promoter distal element 1 (DEI) region containing a high affinity C/EBP binding site.
T12400 87-292 Sentence denotes Nuclear factor binding to the putative C/EBP element (−203/−192) was investigated by electrophoretic mobility shift assay (EMSA) using nuclear extracts from untreated and LPS-treated RAW 264.7 macrophages.
T12399 0-86 Sentence denotes The C/EBP Element is Bound by an LPS-induced Nuclear Factor from RAW 264.7 Macrophages
T171 0-86 Sentence denotes The C/EBP Element is Bound by an LPS-induced Nuclear Factor from RAW 264.7 Macrophages
T172 87-292 Sentence denotes Nuclear factor binding to the putative C/EBP element (−203/−192) was investigated by electrophoretic mobility shift assay (EMSA) using nuclear extracts from untreated and LPS-treated RAW 264.7 macrophages.
T173 293-624 Sentence denotes Three different double stranded oligonucleotide probes were used for EMSA, representing (1) the putative SerpinB2 C/EBP element (−203/−192), (2) a mutant SerpinB2 element containing the same mutation as in pGLmP-539mC/EBP and (3) the rat albumin promoter distal element 1 (DEI) region containing a high affinity C/EBP binding site.
T174 625-728 Sentence denotes Four bands of different mobilities, representing DNA-nuclear protein complexes were detected (Fig. 5A).
T175 729-885 Sentence denotes Three of these bands (I, II, III) represent complexes with single stranded DNA (Fig. 5A) while the uppermost (slowest migrating) complex was induced by LPS.
T176 886-1281 Sentence denotes The LPS-inducible complex was not detected using the mutant C/EBP oligonucleotide probe and could be abolished by an excess of unlabeled double-stranded oligonucleotide, carrying either the same sequence (Fig. 5B, lanes 4 and 5) or the sequence of a known C/EBP binding site from the rat albumin promoter (Fig. 5B, lanes 8 and 9), but not by the mutated oligonucleotide (Fig. 5B, lanes 6 and 7).
T177 1282-1472 Sentence denotes Together these data indicate that the putative SerpinB2 C/EBP site at −203/−192 binds a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors.
T178 1473-1624 Sentence denotes 10.1371/journal.pone.0057855.g005 Figure 5 The LPS-inducible nuclear factor binding the murine SerpinB2 proximal promoter C/EBP site contains C/EBP-β.
T179 1625-2319 Sentence denotes (A) EMSA with nuclear extracts from untreated (UN) and 10 hr LPS treated (LPS) RAW 264.7 cells incubated with either the murine SerpinB2 promoter −212/−185 probe containing an intact (SerpinB2 C/EBP) or mutated (mutant C/EBP) C/EBP site or with the rat albumin promoter DEI region C/EBP (rat albumin C/EBP) probe. (B) Cold competition EMSAs performed with the radiolabelled murine SerpinB2 promoter −212/−185 probe and a 100-fold molar excess of each of the double stranded oligonucleotides described in (A) demonstrate the specificity of the DNA-protein complexes. (C) Supershift assays were performed with the −212/−185 probe by after preincubation with the indicated specific C/EBP antibody.
T180 2320-2377 Sentence denotes The LPS-inducible complex is indicated with an arrowhead.

simple1

Id Subject Object Predicate Lexical cue
T24211 2006-2014 Protein denotes SerpinB2
T24210 1917-1924 Protein denotes albumin
T24209 1878-1885 Protein denotes albumin
T24208 1809-1817 Protein denotes SerpinB2
T24207 1753-1761 Protein denotes SerpinB2
T24206 1616-1623 Protein denotes C/EBP-β
T24205 1569-1577 Protein denotes SerpinB2
T12432 1329-1337 Protein denotes SerpinB2
T12431 1174-1181 Protein denotes albumin
T12430 531-538 Protein denotes albumin
T12429 447-455 Protein denotes SerpinB2
T12428 398-406 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T24248 1550-1557 Binding denotes binding
T24247 2006-2014 Protein denotes SerpinB2
T24246 1917-1924 Protein denotes albumin
T24245 1878-1885 Protein denotes albumin
T24244 1809-1817 Protein denotes SerpinB2
T24243 1753-1761 Protein denotes SerpinB2
T24242 1616-1623 Protein denotes C/EBP-β
T24241 1569-1577 Protein denotes SerpinB2
T12699 1362-1367 Binding denotes binds
T12698 1329-1337 Protein denotes SerpinB2
T12697 1174-1181 Protein denotes albumin
T12696 531-538 Protein denotes albumin
T12695 447-455 Protein denotes SerpinB2
T12694 398-406 Protein denotes SerpinB2
R9436 T12698 T12699 themeOf SerpinB2,binds
R17410 T24241 T24248 themeOf SerpinB2,binding

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T12718 1329-1337 Protein denotes SerpinB2
T12717 1174-1181 Protein denotes albumin
T12716 531-538 Protein denotes albumin
T12715 447-455 Protein denotes SerpinB2
T12714 398-406 Protein denotes SerpinB2
T24276 1550-1557 Binding denotes binding
T24275 2006-2014 Protein denotes SerpinB2
T24274 1917-1924 Protein denotes albumin
T24273 1878-1885 Protein denotes albumin
T24272 1809-1817 Protein denotes SerpinB2
T24271 1753-1761 Protein denotes SerpinB2
T24270 1616-1623 Protein denotes C/EBP-β
T24269 1569-1577 Protein denotes SerpinB2
R17413 T24269 T24276 themeOf SerpinB2,binding

DLUT931

Id Subject Object Predicate Lexical cue
T24261 1550-1557 Binding denotes binding
T24260 2006-2014 Protein denotes SerpinB2
T24259 1917-1924 Protein denotes albumin
T24258 1878-1885 Protein denotes albumin
T24257 1809-1817 Protein denotes SerpinB2
T24256 1753-1761 Protein denotes SerpinB2
T12708 1362-1367 Binding denotes binds
T12707 1329-1337 Protein denotes SerpinB2
T12706 1174-1181 Protein denotes albumin
T12705 531-538 Protein denotes albumin
T12704 447-455 Protein denotes SerpinB2
T12703 398-406 Protein denotes SerpinB2
T24255 1616-1623 Protein denotes C/EBP-β
T24254 1569-1577 Protein denotes SerpinB2
R9437 T12707 T12708 themeOf SerpinB2,binds
R17411 T24254 T24261 themeOf SerpinB2,binding
R17412 T24255 T24261 themeOf C/EBP-β,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T24332 1809-1817 Protein denotes SerpinB2
T24331 1569-1577 Protein denotes SerpinB2
T24330 2161-2189 Entity denotes of the DNA-protein complexes
T24329 2320-2345 Entity denotes The LPS-inducible complex
T24328 1851-1861 Entity denotes C/EBP site
T24327 1878-1885 Protein denotes albumin
T24326 2006-2014 Protein denotes SerpinB2
T24325 1680-1697 Entity denotes 10 hr LPS treated
T24324 2090-2125 Entity denotes stranded oligonucleotides described
T24323 1809-1823 Protein denotes SerpinB2 C/EBP
T24322 1616-1623 Protein denotes C/EBP-β
T24321 2304-2309 Protein denotes C/EBP
T24320 1917-1924 Protein denotes albumin
T24319 1913-1930 Protein denotes rat albumin C/EBP
T24318 1851-1856 Protein denotes C/EBP
T24317 2295-2318 Protein denotes specific C/EBP antibody
T24316 1598-1601 Protein denotes EBP
T24315 1870-1931 Entity denotes the rat albumin promoter DEI region C/EBP (rat albumin C/EBP)
T24314 1981-2039 Entity denotes the radiolabelled murine SerpinB2 promoter −212/−185 probe
T24313 1558-1601 Entity denotes the murine SerpinB2 proximal promoter C/EBP
T24312 1870-1931 Protein denotes the rat albumin promoter DEI region C/EBP (rat albumin C/EBP)
T24311 1837-1849 Protein denotes mutant C/EBP
T24310 1699-1702 Entity denotes LPS
T24309 1639-1655 Entity denotes nuclear extracts
T24308 1602-1606 Entity denotes site
T24307 1895-1898 Protein denotes DEI
T12799 589-623 Binding denotes a high affinity C/EBP binding site
T12798 1131-1190 Binding denotes of a known C/EBP binding site from the rat albumin promoter
T12797 1282-1471 Binding denotes Together these data indicate that the putative SerpinB2 C/EBP site at −203/−192 binds a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors
T12796 293-340 Entity denotes Three different double stranded oligonucleotide
T12795 475-514 Protein denotes the same mutation as in pGLmP-539mC/EBP
T12794 33-36 Entity denotes LPS
T12793 566-569 Protein denotes DEI
T12792 946-951 Protein denotes C/EBP
T12791 0-17 Entity denotes The C/EBP Element
T12790 244-291 Entity denotes untreated and LPS-treated RAW 264.7 macrophages
T12789 4-9 Protein denotes C/EBP
T12788 385-420 Protein denotes the putative SerpinB2 C/EBP element
T12787 523-547 Entity denotes the rat albumin promoter
T12786 222-238 Entity denotes nuclear extracts
T12785 605-610 Protein denotes C/EBP
T12784 126-131 Protein denotes C/EBP
T12783 878-884 Entity denotes by LPS
T12782 1039-1055 Entity denotes oligonucleotide,
T12781 531-538 Protein denotes albumin
T12780 1131-1190 Entity denotes of a known C/EBP binding site from the rat albumin promoter
T12779 1316-1348 Entity denotes the putative SerpinB2 C/EBP site
T12778 1174-1181 Protein denotes albumin
T12777 500-504 Protein denotes GLmP
T12776 1329-1337 Protein denotes SerpinB2
T12775 1228-1255 Entity denotes the mutated oligonucleotide
T12774 398-406 Protein denotes SerpinB2
T12773 674-703 Entity denotes DNA-nuclear protein complexes
T12772 65-86 Entity denotes RAW 264.7 Macrophages
T12771 754-756 Entity denotes II
T12770 589-623 Entity denotes a high affinity C/EBP binding site
T12769 773-782 Entity denotes complexes
T12768 1316-1348 Protein denotes the putative SerpinB2 C/EBP site
T12767 886-911 Entity denotes The LPS-inducible complex
T12766 258-269 Entity denotes LPS-treated
T12765 27-86 Entity denotes by an LPS-induced Nuclear Factor from RAW 264.7 Macrophages
T12764 1166-1190 Entity denotes the rat albumin promoter
T12763 447-455 Protein denotes SerpinB2
T12762 858-865 Entity denotes complex
T12761 1434-1439 Protein denotes C/EBP
T12760 1368-1471 Entity denotes a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors
T12759 1142-1147 Protein denotes C/EBP
R9458 T12760 T12797 themeOf a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors,Together these data indicate that the putative SerpinB2 C/EBP site at −203/−192 binds a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors
R9459 T12764 T12778 partOf the rat albumin promoter,albumin
R9460 T12770 T12799 themeOf a high affinity C/EBP binding site,a high affinity C/EBP binding site
R9461 T12779 T12797 themeOf the putative SerpinB2 C/EBP site,Together these data indicate that the putative SerpinB2 C/EBP site at −203/−192 binds a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors
R9462 T12780 T12798 themeOf of a known C/EBP binding site from the rat albumin promoter,of a known C/EBP binding site from the rat albumin promoter
R9463 T12787 T12781 partOf the rat albumin promoter,albumin
R17428 T24313 T24331 partOf the murine SerpinB2 proximal promoter C/EBP,SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T24291 2304-2318 Protein denotes C/EBP antibody
T24290 1720-1729 Positive_regulation denotes incubated
T24289 1787-1797 Positive_regulation denotes containing
T24288 1801-1807 Positive_regulation denotes intact
T24287 1720-1729 Positive_regulation denotes incubated
T24286 1720-1729 Positive_regulation denotes incubated
T24285 1720-1729 Positive_regulation denotes incubated
T24284 1913-1930 Protein denotes rat albumin C/EBP
T24283 1899-1911 Protein denotes region C/EBP
T24282 1874-1894 Protein denotes rat albumin promoter
T24281 1851-1861 Protein denotes C/EBP site
T24280 1809-1823 Protein denotes SerpinB2 C/EBP
T24279 1550-1557 Binding denotes binding
T24278 1616-1623 Protein denotes C/EBP-β
T24277 1562-1606 Protein denotes murine SerpinB2 proximal promoter C/EBP site
T12738 1362-1367 Binding denotes binds
T12737 1434-1446 Protein denotes C/EBP family
T12736 1329-1348 Protein denotes SerpinB2 C/EBP site
T12735 1192-1195 Protein denotes Fig
T12734 1170-1190 Protein denotes rat albumin promoter
T12733 1142-1160 Protein denotes C/EBP binding site
T12732 939-967 Protein denotes mutant C/EBP oligonucleotide
T12731 368-380 Positive_regulation denotes representing
T12730 591-595 Positive_regulation denotes high
T12729 571-577 Entity denotes region
T12728 389-397 Positive_regulation denotes putative
T12727 605-623 Protein denotes C/EBP binding site
T12726 566-569 Protein denotes DEI
T12725 527-564 Protein denotes rat albumin promoter distal element 1
T12724 499-514 Protein denotes pGLmP-539mC/EBP
T12723 398-420 Protein denotes SerpinB2 C/EBP element
T12722 102-109 Binding denotes binding
T12721 126-139 Protein denotes C/EBP element
T12720 21-26 Binding denotes Bound
T12719 4-17 Protein denotes C/EBP Element
R9438 T12719 T12720 themeOf C/EBP Element,Bound
R9439 T12721 T12722 themeOf C/EBP element,binding
R9440 T12723 T12728 themeOf SerpinB2 C/EBP element,putative
R9441 T12724 T12729 partOf pGLmP-539mC/EBP,region
R9442 T12725 T12729 partOf rat albumin promoter distal element 1,region
R9443 T12726 T12729 partOf DEI,region
R9444 T12727 T12730 themeOf C/EBP binding site,high
R9445 T12727 T12729 partOf C/EBP binding site,region
R9446 T12728 T12731 themeOf putative,representing
R9447 T12736 T12738 themeOf SerpinB2 C/EBP site,binds
R17414 T24277 T24279 themeOf murine SerpinB2 proximal promoter C/EBP site,binding
R17415 T24280 T24288 themeOf SerpinB2 C/EBP,intact
R17416 T24282 T24285 themeOf rat albumin promoter,incubated
R17417 T24283 T24286 themeOf region C/EBP,incubated
R17418 T24284 T24287 themeOf rat albumin C/EBP,incubated
R17419 T24288 T24289 themeOf intact,containing
R17420 T24289 T24290 themeOf containing,incubated

testone

Id Subject Object Predicate Lexical cue
T24160 1550-1557 Binding denotes binding
T24159 1525-1534 Positive_regulation denotes inducible
T24158 2006-2014 Protein denotes SerpinB2
T24157 1917-1924 Protein denotes albumin
T24156 1878-1885 Protein denotes albumin
T24155 1809-1817 Protein denotes SerpinB2
T24154 1753-1761 Protein denotes SerpinB2
T24153 1616-1623 Protein denotes C/EBP-β
T24152 1569-1577 Protein denotes SerpinB2
T12387 1148-1155 Entity denotes binding
T12386 870-877 Positive_regulation denotes induced
T12385 102-109 Binding denotes binding
T12384 21-26 Binding denotes Bound
T12383 1329-1337 Protein denotes SerpinB2
T12382 1174-1181 Protein denotes albumin
T12381 531-538 Protein denotes albumin
T12380 447-455 Protein denotes SerpinB2
T12379 398-406 Protein denotes SerpinB2
R17382 T24153 T24160 themeOf C/EBP-β,binding
R17383 T24160 T24159 themeOf binding,inducible

test3

Id Subject Object Predicate Lexical cue
T24175 2006-2014 Protein denotes SerpinB2
T24174 1917-1924 Protein denotes albumin
T24173 1878-1885 Protein denotes albumin
T24172 1809-1817 Protein denotes SerpinB2
T24171 1753-1761 Protein denotes SerpinB2
T24170 1616-1623 Protein denotes C/EBP-β
T24169 1569-1577 Protein denotes SerpinB2
T24168 1550-1557 Binding denotes binding
T24167 2006-2014 Protein denotes SerpinB2
T24166 1917-1924 Protein denotes albumin
T24165 1878-1885 Protein denotes albumin
T24164 1809-1817 Protein denotes SerpinB2
T24163 1753-1761 Protein denotes SerpinB2
T24162 1616-1623 Protein denotes C/EBP-β
T24161 1569-1577 Protein denotes SerpinB2
T12398 1329-1337 Protein denotes SerpinB2
T12397 1174-1181 Protein denotes albumin
T12396 531-538 Protein denotes albumin
T12395 447-455 Protein denotes SerpinB2
T12394 398-406 Protein denotes SerpinB2
T12393 21-26 Binding denotes Bound
T12392 1329-1337 Protein denotes SerpinB2
T12391 1174-1181 Protein denotes albumin
T12390 531-538 Protein denotes albumin
T12389 447-455 Protein denotes SerpinB2
T12388 398-406 Protein denotes SerpinB2
R17384 T24169 T24168 themeOf SerpinB2,binding
R17385 T24170 T24168 themeOf C/EBP-β,binding